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The map label for this gene is rbfA

Identifier: 49475026

GI number: 49475026

Start: 289122

End: 289529

Strand: Reverse

Name: rbfA

Synonym: BH02140

Alternate gene names: 49475026

Gene position: 289529-289122 (Counterclockwise)

Preceding gene: 49475027

Following gene: 49475025

Centisome position: 14.99

GC content: 39.71

Gene sequence:

>408_bases
ATGAAAAATGCAGAGCCATCACAACGGCAACTAAGAGTAGGAGAACAAGTACGCCATGCGGTAGCTCATATACTGCAGCA
AGGTATTTTACTTGACAATCTCTTGAAAAATATGGTGATTTCTGTCGTTGAAGTGCGCATGTCGCCAGATTTAAAAATTG
CCATTTGCTTTGTTTCTCCACTCAGTACTGTTCATAACGCTTCTCGTGCTGATGTTGTGAATGCTCTCAATAAACATAGC
CGTTTTATCCGTGGAGAAATAAGTCATTCATTGCGACAAATGAAATACATGCCTGAACTGCGTTTTCGACTTGATAACAG
TTTTGATAATTTTTCAAAAATAGATGCTCTCCTGCGCTCACCTGAAGTAGCACGCGATCTTCACCATAACGATAAAGTTG
GAGATTAA

Upstream 100 bases:

>100_bases
AATGGGAAAAGTTATCCGATTTACGCTCAATGCCTCTATTCTTTTTTTTTATGCTTTAATTGGATCGAGAAAAGAGGAAT
TTTAACGAGGTAAAACTTCG

Downstream 100 bases:

>100_bases
AGATATGGCACGGCAAAGCAAAAAAAAAGGCCGTCCTGTTTCTGGTTGGATTATACTTGATAAACCAAAAGGTATGAGAT
CAACAGAAGCTGTCTCACAA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MKNAEPSQRQLRVGEQVRHAVAHILQQGILLDNLLKNMVISVVEVRMSPDLKIAICFVSPLSTVHNASRADVVNALNKHS
RFIRGEISHSLRQMKYMPELRFRLDNSFDNFSKIDALLRSPEVARDLHHNDKVGD

Sequences:

>Translated_135_residues
MKNAEPSQRQLRVGEQVRHAVAHILQQGILLDNLLKNMVISVVEVRMSPDLKIAICFVSPLSTVHNASRADVVNALNKHS
RFIRGEISHSLRQMKYMPELRFRLDNSFDNFSKIDALLRSPEVARDLHHNDKVGD
>Mature_135_residues
MKNAEPSQRQLRVGEQVRHAVAHILQQGILLDNLLKNMVISVVEVRMSPDLKIAICFVSPLSTVHNASRADVVNALNKHS
RFIRGEISHSLRQMKYMPELRFRLDNSFDNFSKIDALLRSPEVARDLHHNDKVGD

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_BARHE (Q6G4W8)

Other databases:

- EMBL:   BX897699
- RefSeq:   YP_033067.1
- ProteinModelPortal:   Q6G4W8
- GeneID:   2864789
- GenomeReviews:   BX897699_GR
- KEGG:   bhe:BH02140
- NMPDR:   fig|283166.1.peg.195
- HOGENOM:   HBG751055
- OMA:   LRQMKYM
- ProtClustDB:   PRK00521
- BioCyc:   BHEN283166:BH02140-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 15405; Mature: 15405

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNAEPSQRQLRVGEQVRHAVAHILQQGILLDNLLKNMVISVVEVRMSPDLKIAICFVSP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHH
LSTVHNASRADVVNALNKHSRFIRGEISHSLRQMKYMPELRFRLDNSFDNFSKIDALLRS
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
PEVARDLHHNDKVGD
HHHHHHHHCCCCCCC
>Mature Secondary Structure
MKNAEPSQRQLRVGEQVRHAVAHILQQGILLDNLLKNMVISVVEVRMSPDLKIAICFVSP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHH
LSTVHNASRADVVNALNKHSRFIRGEISHSLRQMKYMPELRFRLDNSFDNFSKIDALLRS
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
PEVARDLHHNDKVGD
HHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA