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The map label for this gene is secB

Identifier: 49474922

GI number: 49474922

Start: 141929

End: 142405

Strand: Reverse

Name: secB

Synonym: BH01020

Alternate gene names: 49474922

Gene position: 142405-141929 (Counterclockwise)

Preceding gene: 49474923

Following gene: 49474920

Centisome position: 7.37

GC content: 36.69

Gene sequence:

>477_bases
ATGGCTGAAAGTGAAATTAACAACAATGATGGAGAACCCGTTTTTGCTGTATTAACTCAATATTTAAAAGATCTTTCATT
TGAGAACCCAAGTGCCCCTCGCTCACTACGTCCACGTGAAAAAGCACCACAAATTGATATCAATATTAATGTCAATGCTA
ATCCAATTGGCGATGACAATTATGATGTTGTTTTATCACTCTCAGTTAAAGCTAGTGATGATAGTGAAACATTATTTCAT
GTAGAATTGATTTACGGTGGCGTTTTCCATATCAAAAACATTCCTCAAGAGCATGTTATGCCACTTGTTTTTATTGAATG
CCCCCGTCTTTTGTTTCCATTTGCTCGGCAAATTATCTCTGACGCTACTCAAAATGGTGGTTTTCCACCTTTGTGGATTG
ATCCAATTGATTTTGCAGCTCTCTTTCAAAAGCGTGTTGCTGAAGAACAAAAAAACAGCCAAACACTCTCATCTTAA

Upstream 100 bases:

>100_bases
AAAAAGTAGAGCATTTCTTGCAACCTTCTGCAAGGCGTGATAACCAGCCTTGTCTTTAGATCTAAAATAGAAATACATAT
ATTATGATGAGGTTAGTAAT

Downstream 100 bases:

>100_bases
AAATTTATTTTTTATCAAAAAGGCCTTGAAATATCAGAGGCCTTTATTTTTTATAACTTTTCTGCATGGTAAGCGGCTAG
GGTTGCGATATTGACAACAT

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MAESEINNNDGEPVFAVLTQYLKDLSFENPSAPRSLRPREKAPQIDININVNANPIGDDNYDVVLSLSVKASDDSETLFH
VELIYGGVFHIKNIPQEHVMPLVFIECPRLLFPFARQIISDATQNGGFPPLWIDPIDFAALFQKRVAEEQKNSQTLSS

Sequences:

>Translated_158_residues
MAESEINNNDGEPVFAVLTQYLKDLSFENPSAPRSLRPREKAPQIDININVNANPIGDDNYDVVLSLSVKASDDSETLFH
VELIYGGVFHIKNIPQEHVMPLVFIECPRLLFPFARQIISDATQNGGFPPLWIDPIDFAALFQKRVAEEQKNSQTLSS
>Mature_157_residues
AESEINNNDGEPVFAVLTQYLKDLSFENPSAPRSLRPREKAPQIDININVNANPIGDDNYDVVLSLSVKASDDSETLFHV
ELIYGGVFHIKNIPQEHVMPLVFIECPRLLFPFARQIISDATQNGGFPPLWIDPIDFAALFQKRVAEEQKNSQTLSS

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=141, Percent_Identity=34.0425531914894, Blast_Score=98, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_BARHE (Q6G540)

Other databases:

- EMBL:   BX897699
- RefSeq:   YP_032963.1
- ProteinModelPortal:   Q6G540
- SMR:   Q6G540
- GeneID:   2865178
- GenomeReviews:   BX897699_GR
- KEGG:   bhe:BH01020
- NMPDR:   fig|283166.1.peg.91
- HOGENOM:   HBG294212
- OMA:   GFPPLMI
- PhylomeDB:   Q6G540
- ProtClustDB:   PRK05751
- BioCyc:   BHEN283166:BH01020-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 17711; Mature: 17580

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAESEINNNDGEPVFAVLTQYLKDLSFENPSAPRSLRPREKAPQIDININVNANPIGDDN
CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCC
YDVVLSLSVKASDDSETLFHVELIYGGVFHIKNIPQEHVMPLVFIECPRLLFPFARQIIS
CEEEEEEEEECCCCCCEEEEEEEHHCCCCEECCCCHHHCCEEHEECCCHHHHHHHHHHHH
DATQNGGFPPLWIDPIDFAALFQKRVAEEQKNSQTLSS
HHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AESEINNNDGEPVFAVLTQYLKDLSFENPSAPRSLRPREKAPQIDININVNANPIGDDN
CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCC
YDVVLSLSVKASDDSETLFHVELIYGGVFHIKNIPQEHVMPLVFIECPRLLFPFARQIIS
CEEEEEEEEECCCCCCEEEEEEEHHCCCCEECCCCHHHCCEEHEECCCHHHHHHHHHHHH
DATQNGGFPPLWIDPIDFAALFQKRVAEEQKNSQTLSS
HHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA