Click here to switch to the map view.

The map label for this gene is ynbA [H]

Identifier: 49186555

GI number: 49186555

Start: 3511110

End: 3512174

Strand: Reverse

Name: ynbA [H]

Synonym: BAS3553

Alternate gene names: 49186555

Gene position: 3512174-3511110 (Counterclockwise)

Preceding gene: 49186557

Following gene: 49186554

Centisome position: 67.17

GC content: 37.18

Gene sequence:

>1065_bases
TTGATGGAAGAAAAAGAAAAAGTCATATTAGTGGGCTGTCAATTGCCGCAAGATGATGATGAAAAGTTTATGCATTCCAT
GAAAGAGCTTGCATCGCTAGCGAAGACTGCACGAGCAGAATTGTTAGTGTCTACAACGCAAAAACGACCGAAGTTTCATC
CGGCGACTTATATCGGTAAAGGTAAATTAGAAGAGCTTACCATGTTAACTGAAGAATTAGAACCGGATGTTATCGTATTT
AATAACGAATTAACACCGAGTCAAATTCGGAATTTATCCTCAGTATTAGATGCGAGGGTAATTGATCGAACGCAACTCAT
ATTAGATATTTTTGCGCAACGTGCGAAATCGAGAGAAGGGAAGCTTCAAGTAGAATTAGCTCAGTTGCAATATACAATGC
CGCGTCTTATGGGACAAGGATTGTCTTTATCACGTCTTGGTGGTGGTATTGGAACGAGAGGGCCGGGTGAAACGAAGCTT
GAGACGGACCGTCGTCATATTCGATCACGCATTGATGAAATAAAGAAACAACTTGCGGTTGTTGTGGAACATCGAAAAAG
ATATCGTGAGAGAAGAAAAGATAATAAAGTATTTCAAGTTTCGTTAATAGGATATACGAATGCGGGAAAATCTACACTGT
TTAATAGATTAACGGAAGCCGATACATTTGAAGAAAACTTGTTGTTTGCAACACTAGACCCGACAACAAGGAAGATGCCG
CTACCTTCTGGTTATACAGTATTACTAACTGATACAGTTGGTTTTATACAAGATTTACCTACGTCATTAATTGCTGCATT
CCGTTCGACGTTAGAAGAAGCTGGTGAAGCGGATGTTATTTTACATGTTGTGGATTCTGCAGATCCTAATTATGTAGGGC
ATGAGAAAACAGTAAAACAATTATTGTCAGAACTCGAAATTAATCATATTCCTATTATTACGTTATATAATAAAAAAGAT
GAATTACATCAAAACTTTATTCCGTTTCCGAAAAATGACTTCTTAATGACTAGTGCTTTTGAAGAAAAGGATCTATTACA
TATAAAAGAAGCGAAACGAAAATGA

Upstream 100 bases:

>100_bases
TCCCATGCCATGAATTTTCTCCCCCGCTAACTAGATGAAATGTGCTTCCTCTGCTATTATATTAGAAGGTTTAAATTTCG
AAAAGGATGAGTGAACATAT

Downstream 100 bases:

>100_bases
AGGAAGAAATGAATCGTTATCAAGTGGAGATTCCTCCGAGTGAAGGTAAGTTGTTAACGTTACTAAAGACGGAGACGCTA
TTAACGAAGATGGAGTTTTT

Product: GTP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
MMEEKEKVILVGCQLPQDDDEKFMHSMKELASLAKTARAELLVSTTQKRPKFHPATYIGKGKLEELTMLTEELEPDVIVF
NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQGLSLSRLGGGIGTRGPGETKL
ETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQVSLIGYTNAGKSTLFNRLTEADTFEENLLFATLDPTTRKMP
LPSGYTVLLTDTVGFIQDLPTSLIAAFRSTLEEAGEADVILHVVDSADPNYVGHEKTVKQLLSELEINHIPIITLYNKKD
ELHQNFIPFPKNDFLMTSAFEEKDLLHIKEAKRK

Sequences:

>Translated_354_residues
MMEEKEKVILVGCQLPQDDDEKFMHSMKELASLAKTARAELLVSTTQKRPKFHPATYIGKGKLEELTMLTEELEPDVIVF
NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQGLSLSRLGGGIGTRGPGETKL
ETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQVSLIGYTNAGKSTLFNRLTEADTFEENLLFATLDPTTRKMP
LPSGYTVLLTDTVGFIQDLPTSLIAAFRSTLEEAGEADVILHVVDSADPNYVGHEKTVKQLLSELEINHIPIITLYNKKD
ELHQNFIPFPKNDFLMTSAFEEKDLLHIKEAKRK
>Mature_354_residues
MMEEKEKVILVGCQLPQDDDEKFMHSMKELASLAKTARAELLVSTTQKRPKFHPATYIGKGKLEELTMLTEELEPDVIVF
NNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQGLSLSRLGGGIGTRGPGETKL
ETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQVSLIGYTNAGKSTLFNRLTEADTFEENLLFATLDPTTRKMP
LPSGYTVLLTDTVGFIQDLPTSLIAAFRSTLEEAGEADVILHVVDSADPNYVGHEKTVKQLLSELEINHIPIITLYNKKD
ELHQNFIPFPKNDFLMTSAFEEKDLLHIKEAKRK

Specific function: Unknown

COG id: COG2262

COG function: function code R; GTPases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI310133116, Length=145, Percent_Identity=39.3103448275862, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI310133118, Length=162, Percent_Identity=37.6543209876543, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI310124269, Length=137, Percent_Identity=40.1459854014599, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI310124267, Length=137, Percent_Identity=40.1459854014599, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI310124171, Length=137, Percent_Identity=40.1459854014599, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI310124169, Length=137, Percent_Identity=40.1459854014599, Blast_Score=97, Evalue=3e-20,
Organism=Escherichia coli, GI1790615, Length=323, Percent_Identity=45.8204334365325, Blast_Score=270, Evalue=2e-73,
Organism=Caenorhabditis elegans, GI17561038, Length=285, Percent_Identity=32.6315789473684, Blast_Score=124, Evalue=6e-29,
Organism=Drosophila melanogaster, GI24650079, Length=285, Percent_Identity=35.0877192982456, Blast_Score=125, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016496
- InterPro:   IPR006073
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 40299; Mature: 40299

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMEEKEKVILVGCQLPQDDDEKFMHSMKELASLAKTARAELLVSTTQKRPKFHPATYIGK
CCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECC
GKLEELTMLTEELEPDVIVFNNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREG
CCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KLQVELAQLQYTMPRLMGQGLSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAV
CEEEEHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
VVEHRKRYRERRKDNKVFQVSLIGYTNAGKSTLFNRLTEADTFEENLLFATLDPTTRKMP
HHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHCCHHHCEEEEEECCCCCCCC
LPSGYTVLLTDTVGFIQDLPTSLIAAFRSTLEEAGEADVILHVVDSADPNYVGHEKTVKQ
CCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHH
LLSELEINHIPIITLYNKKDELHQNFIPFPKNDFLMTSAFEEKDLLHIKEAKRK
HHHHCCCCCCCEEEEECCHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MMEEKEKVILVGCQLPQDDDEKFMHSMKELASLAKTARAELLVSTTQKRPKFHPATYIGK
CCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECC
GKLEELTMLTEELEPDVIVFNNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREG
CCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KLQVELAQLQYTMPRLMGQGLSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAV
CEEEEHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
VVEHRKRYRERRKDNKVFQVSLIGYTNAGKSTLFNRLTEADTFEENLLFATLDPTTRKMP
HHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHCCHHHCEEEEEECCCCCCCC
LPSGYTVLLTDTVGFIQDLPTSLIAAFRSTLEEAGEADVILHVVDSADPNYVGHEKTVKQ
CCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHH
LLSELEINHIPIITLYNKKDELHQNFIPFPKNDFLMTSAFEEKDLLHIKEAKRK
HHHHCCCCCCCEEEEECCHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]