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The map label for this gene is intR [C]

Identifier: 49186550

GI number: 49186550

Start: 3506945

End: 3507574

Strand: Direct

Name: intR [C]

Synonym: BAS3548

Alternate gene names: 49186550

Gene position: 3506945-3507574 (Clockwise)

Preceding gene: 49186549

Following gene: 49186556

Centisome position: 67.07

GC content: 32.06

Gene sequence:

>630_bases
ATGCGAAGTGAAGACATTCCCCTTTTCTTAAAGACTTCTTATCAATACAACTATATTTATTACATCTTTTTCAAAGCACT
ACTGAATACAGGTATGCGCAAAGGTGAAGCTGCTGCTTTACAATGGAAAGACATAAATTTAAAAGAACATACTATTATTA
TTTCTAAAACATTGGATTTTACAGCTAAAACAAAAGAAGAATTATTTGGAGATACAAAAACATTTACTTCTAAACGTACT
ATCATGATTCCTAAATCATTAGTCGATGAACTGCTGGCACATAAAAAGTGGCAAAATGCCAATAAGCTTGTTTTACAAGA
TGCGTATGAGCATGAATTAGATTTAGTCTTTTCAAGAGTCGATGGAAAGTTCTTACCGAAGTCAACATTGTTCAATGCAT
TCTCACGCATACTTAAGAAAGCAAATTTACCTAGATTAGAAATACATTCATTACGACACACCCACGCGGTTCTTTTATTA
GAGTCTGGTGCAAGTATGAAATACATTCAAGATCGACTAGGACATAAGAGTATAGAAATAACTTCTAACGTTTACTCTCA
TATTAGCGACAAAATTAATAAAGATTCTATTTCAGGGTTTGAAGCTTATATGAATAATGTATTGGGGTAA

Upstream 100 bases:

>100_bases
CTATGAAAAAGGCTGTTAGCTTAAAAAAATCGAAAACAATCCTTGTGAAGAAGTAGTTATTTCAAATAAGAACAATAAAG
AAAGAGAAGGGCTAAAATAC

Downstream 100 bases:

>100_bases
CTTTGATTTTTTTGTGGGTGTTTTGTGGGTGGATTACTCTTCTTTCAAATAAAAGTGTTTTACCCACAAAATAAAAAAAC
CCTCAACACGTTGTGTGTCA

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MRSEDIPLFLKTSYQYNYIYYIFFKALLNTGMRKGEAAALQWKDINLKEHTIIISKTLDFTAKTKEELFGDTKTFTSKRT
IMIPKSLVDELLAHKKWQNANKLVLQDAYEHELDLVFSRVDGKFLPKSTLFNAFSRILKKANLPRLEIHSLRHTHAVLLL
ESGASMKYIQDRLGHKSIEITSNVYSHISDKINKDSISGFEAYMNNVLG

Sequences:

>Translated_209_residues
MRSEDIPLFLKTSYQYNYIYYIFFKALLNTGMRKGEAAALQWKDINLKEHTIIISKTLDFTAKTKEELFGDTKTFTSKRT
IMIPKSLVDELLAHKKWQNANKLVLQDAYEHELDLVFSRVDGKFLPKSTLFNAFSRILKKANLPRLEIHSLRHTHAVLLL
ESGASMKYIQDRLGHKSIEITSNVYSHISDKINKDSISGFEAYMNNVLG
>Mature_209_residues
MRSEDIPLFLKTSYQYNYIYYIFFKALLNTGMRKGEAAALQWKDINLKEHTIIISKTLDFTAKTKEELFGDTKTFTSKRT
IMIPKSLVDELLAHKKWQNANKLVLQDAYEHELDLVFSRVDGKFLPKSTLFNAFSRILKKANLPRLEIHSLRHTHAVLLL
ESGASMKYIQDRLGHKSIEITSNVYSHISDKINKDSISGFEAYMNNVLG

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787607, Length=196, Percent_Identity=26.530612244898, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 24135; Mature: 24135

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSEDIPLFLKTSYQYNYIYYIFFKALLNTGMRKGEAAALQWKDINLKEHTIIISKTLDF
CCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEEEEECCCC
TAKTKEELFGDTKTFTSKRTIMIPKSLVDELLAHKKWQNANKLVLQDAYEHELDLVFSRV
CHHHHHHHCCCCHHHCCCEEEECCHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHC
DGKFLPKSTLFNAFSRILKKANLPRLEIHSLRHTHAVLLLESGASMKYIQDRLGHKSIEI
CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHEEEEEEECCCCHHHHHHHHCCCEEEE
TSNVYSHISDKINKDSISGFEAYMNNVLG
HHHHHHHHHHHCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MRSEDIPLFLKTSYQYNYIYYIFFKALLNTGMRKGEAAALQWKDINLKEHTIIISKTLDF
CCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEEEEECCCC
TAKTKEELFGDTKTFTSKRTIMIPKSLVDELLAHKKWQNANKLVLQDAYEHELDLVFSRV
CHHHHHHHCCCCHHHCCCEEEECCHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHC
DGKFLPKSTLFNAFSRILKKANLPRLEIHSLRHTHAVLLLESGASMKYIQDRLGHKSIEI
CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHEEEEEEECCCCHHHHHHHHCCCEEEE
TSNVYSHISDKINKDSISGFEAYMNNVLG
HHHHHHHHHHHCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]