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The map label for this gene is xpf [H]

Identifier: 49186524

GI number: 49186524

Start: 3488874

End: 3489377

Strand: Reverse

Name: xpf [H]

Synonym: BAS3522

Alternate gene names: 49186524

Gene position: 3489377-3488874 (Counterclockwise)

Preceding gene: 49186525

Following gene: 49186523

Centisome position: 66.74

GC content: 40.08

Gene sequence:

>504_bases
ATGCAGGATTTGATTAAGCAATATAACACGACTTTAAGGCAATTGAGAGAAGCGCAGAAGGATGCTAAAGAGGAAGATGT
AAAGGTTCTCACTGATATGATTAGTGACATTACTTATTCCTTAGAATGGATGAAAAAGGCGAGAAGACCGGGAAATCGTA
GAGGGGTTGAAAGGTTAGCTGCGTATCAGAGAGAAAGAGCGTGCGATCCGTTGTTAATGCAAAGGTATTTTCGTAGCATG
GATGATAACTTATATGAGTGGGATAATCATCAGCAAGAGCATTCAATTGGTGAATGGGATAAGGTAAGGCTAGAGGATGC
GTTGTCATTGCTAACAGAGCGGGAGAAAGAAGTATACCTCATGTCTCGAGGATATTGTTTAACATACAGAGAGATTGCTA
GATACCTAGACATTACATGTAGTACGGTACAATCTATGATAGAACGTGCTGAAAAGAAAATAGCAAGACAGGTAAATGAG
AGCCTCTTCTGCAATTGTGGATGA

Upstream 100 bases:

>100_bases
AGCGTAGAAATTAAATATGAAAGTAATAAAAGAACACTGTTATGTAGAGAAGTACAGTCTATATACGGTGTTCTTTTTTG
TTTATAAGGAGGGGATAGGT

Downstream 100 bases:

>100_bases
GGCTTTTTTTGTTTTAGTAGATTTTTAATTATTAAATTACGAAATTACGCTTGACGGTAATTGCGTTATTTCGTAATATA
GTAACAGAAGCAAGACTTAC

Product: positive control sigma-like factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MQDLIKQYNTTLRQLREAQKDAKEEDVKVLTDMISDITYSLEWMKKARRPGNRRGVERLAAYQRERACDPLLMQRYFRSM
DDNLYEWDNHQQEHSIGEWDKVRLEDALSLLTEREKEVYLMSRGYCLTYREIARYLDITCSTVQSMIERAEKKIARQVNE
SLFCNCG

Sequences:

>Translated_167_residues
MQDLIKQYNTTLRQLREAQKDAKEEDVKVLTDMISDITYSLEWMKKARRPGNRRGVERLAAYQRERACDPLLMQRYFRSM
DDNLYEWDNHQQEHSIGEWDKVRLEDALSLLTEREKEVYLMSRGYCLTYREIARYLDITCSTVQSMIERAEKKIARQVNE
SLFCNCG
>Mature_167_residues
MQDLIKQYNTTLRQLREAQKDAKEEDVKVLTDMISDITYSLEWMKKARRPGNRRGVERLAAYQRERACDPLLMQRYFRSM
DDNLYEWDNHQQEHSIGEWDKVRLEDALSLLTEREKEVYLMSRGYCLTYREIARYLDITCSTVQSMIERAEKKIARQVNE
SLFCNCG

Specific function: Positive regulatory protein that acts at the late promoter PL [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013249
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19989; Mature: 19989

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00622 HTH_LUXR_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDLIKQYNTTLRQLREAQKDAKEEDVKVLTDMISDITYSLEWMKKARRPGNRRGVERLA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
AYQRERACDPLLMQRYFRSMDDNLYEWDNHQQEHSIGEWDKVRLEDALSLLTEREKEVYL
HHHHHHCCCHHHHHHHHHHHCCCHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
MSRGYCLTYREIARYLDITCSTVQSMIERAEKKIARQVNESLFCNCG
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQDLIKQYNTTLRQLREAQKDAKEEDVKVLTDMISDITYSLEWMKKARRPGNRRGVERLA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
AYQRERACDPLLMQRYFRSMDDNLYEWDNHQQEHSIGEWDKVRLEDALSLLTEREKEVYL
HHHHHHCCCHHHHHHHHHHHCCCHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
MSRGYCLTYREIARYLDITCSTVQSMIERAEKKIARQVNESLFCNCG
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8083174; 9384377 [H]