Click here to switch to the map view.

The map label for this gene is ydhM [C]

Identifier: 49186239

GI number: 49186239

Start: 3208070

End: 3208660

Strand: Direct

Name: ydhM [C]

Synonym: BAS3234

Alternate gene names: 49186239

Gene position: 3208070-3208660 (Clockwise)

Preceding gene: 49186231

Following gene: 49186242

Centisome position: 61.36

GC content: 33.5

Gene sequence:

>591_bases
ATGACTAAAGTTGATACAGTAAAAGAAAAGATTATTGAAACATCTTTATATTTATTTAATACTAATGGGATAACTCGCAC
ATCCATTCAGGATATAATGACAGCTACTGAACTACCGAAAGGATCTATTTATCGTAGATTCAAAAATAAAGAAGAAATTG
TCCTTGCCGCCTACGACAAAAGTGGTGAGATTATGTGGAGTCATTTTCATAAAGCAATGGAAAATAAAAAGACAGCAATC
GATAAAATCCTTGCAATTTTCCTTGTATATCAAGATGCAGCTAATAACCCCCCTATTGCTGGAGGCTGTCCATTGCTTAA
TAGCGCAATTGAAAGTACTGGAGTATTTCCAGAATTACAAAAAGCAGCAGCAAAAGGCTATGATGATACAGTAATGTTAA
TGGCTTCTCTCATAAAAGAAGGAATAGAGAAACAAGAACTTAAAGAAGAGATAAACATTATATCGCTCGCTTCTTTCCTT
GCCTCTTCAATGGAGGGCGCTATTATGGCAAGTCGAGTATCTAACGATAATATACACCATCATTATTTTATTGAACAAAT
AAAACATCATCTTTTCTCTTATTCTAAATAA

Upstream 100 bases:

>100_bases
TTTGCTCCAAACTTATTTCTACTTACAAAAAAATTAAGAAAATAGAGGGTAAACATTACCTGGAATATTAAGCTCGTTTT
TATTAGGAGGACTACAAAGC

Downstream 100 bases:

>100_bases
GCGAGAACTTGCATTGCCTTTTTATAGACTTAAATTGAATACCCTTCCCATAAAAAGTATTTACTGTTTATGAGAAGGGT
ATTAATTTTTAGCAACTGTA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MTKVDTVKEKIIETSLYLFNTNGITRTSIQDIMTATELPKGSIYRRFKNKEEIVLAAYDKSGEIMWSHFHKAMENKKTAI
DKILAIFLVYQDAANNPPIAGGCPLLNSAIESTGVFPELQKAAAKGYDDTVMLMASLIKEGIEKQELKEEINIISLASFL
ASSMEGAIMASRVSNDNIHHHYFIEQIKHHLFSYSK

Sequences:

>Translated_196_residues
MTKVDTVKEKIIETSLYLFNTNGITRTSIQDIMTATELPKGSIYRRFKNKEEIVLAAYDKSGEIMWSHFHKAMENKKTAI
DKILAIFLVYQDAANNPPIAGGCPLLNSAIESTGVFPELQKAAAKGYDDTVMLMASLIKEGIEKQELKEEINIISLASFL
ASSMEGAIMASRVSNDNIHHHYFIEQIKHHLFSYSK
>Mature_195_residues
TKVDTVKEKIIETSLYLFNTNGITRTSIQDIMTATELPKGSIYRRFKNKEEIVLAAYDKSGEIMWSHFHKAMENKKTAID
KILAIFLVYQDAANNPPIAGGCPLLNSAIESTGVFPELQKAAAKGYDDTVMLMASLIKEGIEKQELKEEINIISLASFLA
SSMEGAIMASRVSNDNIHHHYFIEQIKHHLFSYSK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22002; Mature: 21870

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKVDTVKEKIIETSLYLFNTNGITRTSIQDIMTATELPKGSIYRRFKNKEEIVLAAYDK
CCCHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEECC
SGEIMWSHFHKAMENKKTAIDKILAIFLVYQDAANNPPIAGGCPLLNSAIESTGVFPELQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHH
KAAAKGYDDTVMLMASLIKEGIEKQELKEEINIISLASFLASSMEGAIMASRVSNDNIHH
HHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHH
HYFIEQIKHHLFSYSK
HHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TKVDTVKEKIIETSLYLFNTNGITRTSIQDIMTATELPKGSIYRRFKNKEEIVLAAYDK
CCHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEECC
SGEIMWSHFHKAMENKKTAIDKILAIFLVYQDAANNPPIAGGCPLLNSAIESTGVFPELQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHH
KAAAKGYDDTVMLMASLIKEGIEKQELKEEINIISLASFLASSMEGAIMASRVSNDNIHH
HHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHH
HYFIEQIKHHLFSYSK
HHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10475962; 12004073 [H]