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The map label for this gene is ytcD [H]

Identifier: 49186228

GI number: 49186228

Start: 3196053

End: 3196376

Strand: Direct

Name: ytcD [H]

Synonym: BAS3223

Alternate gene names: 49186228

Gene position: 3196053-3196376 (Clockwise)

Preceding gene: 49186220

Following gene: 49186231

Centisome position: 61.13

GC content: 35.49

Gene sequence:

>324_bases
ATGAATCAAAATGATAGCTGTCCAATTGCAACGACGCTCGATGTAATCGGCGGAAAATGGAAAGTTTATATTTTATGTGT
TTTGATGGATGGAAAAATGCGAACAAATGAAATTAAACGAGAAATTCCAAACCTTACACAAAAAGTACTTACACAACAAC
TTCGGCAACTTGAAGCTGATGGGATTATCCATCGTACCGTATATCAAGAAGTACCACCAAAGGTTGAGTACACACTAAGT
GAGCACGGAAAATCTTTAATGAAAATTATGGATGAACTATTTGAATGGGGAAAAGGTCATCAGATCAAAAGATTACATGA
CTAA

Upstream 100 bases:

>100_bases
ATTCAATCCTTTACGTATTAGTATGAATGCATTACATATAATTGAAAAGTACGTACTTTGAGGTGCTATAGGAACCTTGA
GGTACCTTTGGAGGTGTTAT

Downstream 100 bases:

>100_bases
AAAGACACTATATACTTTGTTTAATCCTCTATATTTATATTTTGTGTTTTTATAAATTTTATTTTTATCGTTTTTGGGCT
AACTTGTTTTCTTAGATTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 107

Protein sequence:

>107_residues
MNQNDSCPIATTLDVIGGKWKVYILCVLMDGKMRTNEIKREIPNLTQKVLTQQLRQLEADGIIHRTVYQEVPPKVEYTLS
EHGKSLMKIMDELFEWGKGHQIKRLHD

Sequences:

>Translated_107_residues
MNQNDSCPIATTLDVIGGKWKVYILCVLMDGKMRTNEIKREIPNLTQKVLTQQLRQLEADGIIHRTVYQEVPPKVEYTLS
EHGKSLMKIMDELFEWGKGHQIKRLHD
>Mature_107_residues
MNQNDSCPIATTLDVIGGKWKVYILCVLMDGKMRTNEIKREIPNLTQKVLTQQLRQLEADGIIHRTVYQEVPPKVEYTLS
EHGKSLMKIMDELFEWGKGHQIKRLHD

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=92, Percent_Identity=34.7826086956522, Blast_Score=71, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 12434; Mature: 12434

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQNDSCPIATTLDVIGGKWKVYILCVLMDGKMRTNEIKREIPNLTQKVLTQQLRQLEAD
CCCCCCCCHHHHHHHHCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
GIIHRTVYQEVPPKVEYTLSEHGKSLMKIMDELFEWGKGHQIKRLHD
CHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MNQNDSCPIATTLDVIGGKWKVYILCVLMDGKMRTNEIKREIPNLTQKVLTQQLRQLEAD
CCCCCCCCHHHHHHHHCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
GIIHRTVYQEVPPKVEYTLSEHGKSLMKIMDELFEWGKGHQIKRLHD
CHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]