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The map label for this gene is ybfI [H]

Identifier: 49185992

GI number: 49185992

Start: 2958551

End: 2958886

Strand: Reverse

Name: ybfI [H]

Synonym: BAS2987

Alternate gene names: 49185992

Gene position: 2958886-2958551 (Counterclockwise)

Preceding gene: 49185993

Following gene: 49185991

Centisome position: 56.59

GC content: 32.44

Gene sequence:

>336_bases
TTGAAAGATACTATGCGATTGATAAAAAATAATTATGTTCAAAACATGTCTTTAAATGAAATTGCATCAAGGGTAGGAGT
TAGTCGTTTTCATTTAAATCGGATTTTCAAAGAAAGAACAGGGTATACTCCTCGAATATATTTAGAAAGGATCAGAGTTA
AGAAAGCAAAGGAACTTCTCTTGACAACGGTCTTTAATAGTACAGAGATTGGTTATCAAACAGGCTATCAAAGTGTATCT
AGCTTTTATAATGCATTTAAAAGAAATACAGGATTTTCACCGAGTCAATTCCGTGCTTTTCATAGTGGAAATACCGTAAA
CCAAGAACTTGACTGA

Upstream 100 bases:

>100_bases
TTTTTCAAATGCGCAAGAAGCTCAAAGGGCAGGCTATCGCCCATGCAAAAGATGCCGATCAGATCTAAATATAAAAATAT
ACGATCCGTTCGAATGCGTT

Downstream 100 bases:

>100_bases
ATTCACGTTCTTTAACAAAAGATAGCATGAATTAACAAGAGTGCTTTGCACTCATCGTATTTTTCGATAAATCATTACTG
ATTGATTAAAAGTAAACAAT

Product: transcriptional regulator fragment

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 111

Protein sequence:

>111_residues
MKDTMRLIKNNYVQNMSLNEIASRVGVSRFHLNRIFKERTGYTPRIYLERIRVKKAKELLLTTVFNSTEIGYQTGYQSVS
SFYNAFKRNTGFSPSQFRAFHSGNTVNQELD

Sequences:

>Translated_111_residues
MKDTMRLIKNNYVQNMSLNEIASRVGVSRFHLNRIFKERTGYTPRIYLERIRVKKAKELLLTTVFNSTEIGYQTGYQSVS
SFYNAFKRNTGFSPSQFRAFHSGNTVNQELD
>Mature_111_residues
MKDTMRLIKNNYVQNMSLNEIASRVGVSRFHLNRIFKERTGYTPRIYLERIRVKKAKELLLTTVFNSTEIGYQTGYQSVS
SFYNAFKRNTGFSPSQFRAFHSGNTVNQELD

Specific function: Regulatory Protein For The Xylbafghr Operon. [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789993, Length=98, Percent_Identity=30.6122448979592, Blast_Score=64, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 12968; Mature: 12968

Theoretical pI: Translated: 10.69; Mature: 10.69

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDTMRLIKNNYVQNMSLNEIASRVGVSRFHLNRIFKERTGYTPRIYLERIRVKKAKELL
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LTTVFNSTEIGYQTGYQSVSSFYNAFKRNTGFSPSQFRAFHSGNTVNQELD
HHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKDTMRLIKNNYVQNMSLNEIASRVGVSRFHLNRIFKERTGYTPRIYLERIRVKKAKELL
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LTTVFNSTEIGYQTGYQSVSSFYNAFKRNTGFSPSQFRAFHSGNTVNQELD
HHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]