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The map label for this gene is rocC [H]

Identifier: 49185792

GI number: 49185792

Start: 2765843

End: 2767279

Strand: Direct

Name: rocC [H]

Synonym: BAS2786

Alternate gene names: 49185792

Gene position: 2765843-2767279 (Clockwise)

Preceding gene: 49185789

Following gene: 49185796

Centisome position: 52.9

GC content: 36.05

Gene sequence:

>1437_bases
GTGAGGAAAACAATGTCGCAAGTAAACAATACAAACAATGAATTAAAACGTACGATGAAAAGTAGACACTTATTCATGAT
TGCACTCGGTGGTGTGATTGGAACGGAGTTATTTAACGGATCTGGCTTTATTATAAGTCAAGCTGGACCTGGTGGATCCG
TACTTGCCTTTATGGCTGGTGGATTATTAATGTATTTCGTTATGCTTTGTCTTGGTGAACTCGCTGTAGCTATGCCTGTT
TCAGGTTCTTTTCAGGAATATGCAACTAAGTTCATCAATCCTGCAACTGGATTTACAATCGGCTGGTTATATTGGTTAAG
CTGGGCAAATACGACCGGTCTTGAATTTACAACTGCTGGCATTACAATGCAGCGCTGGTTCCCTGATATTCCTGTTTGGG
TTTGGTGTTTAATATTTGGTGTTACAATCTTCATGATTAATGCATTATCTGCTCGTAGTTATGCAGAAACAGAATTTTGG
TTTTCAAGTATAAAAGTATCTGCCATTATAGCTTTTATTATTCTTGGCGGCGCCGCTATGTTCGGTTTAATTGATTTAAA
AGGCGACGAACCAGCCCCATTATTATCAAATTTCGTAAATCATGGCGGTTTATTCCCAAATGGACTTGCAGCTATTCTAT
TAACGATGGTTACAGTTAATTATTCCTTCCAAGGTACAGAACTTGTCGGAATCGCAGCAGGTGAAAGTGAAGATCCAGCA
AAAACTTTACCTCGTTCTATTAGAAATATTATATGGCGTACGATGTTTTTCTTCGTCTTAGCAATCTTTGTTCTTGTTGC
TTTAATTCCTTGGGAAGAAGCAGGATTAACAAAAAGCCCGTTCGTTGCTGTTTTTGATAATATCAGTATTCCATATGCAG
CTGATATTATGAACTTTGTTATTCTTACAGCTGTTCTTTCTGTCGCAAACTCAGGACTTTACGCGGCAACTCGTATGCTT
TGGTCATTATCAAAAAATGAAATGGCTCCAGCCTTTTTAAAGAAATTATCATCACGAGGAATACCTTTAAACGCTTTAAT
TTTGACAATTTCTATTTCTGCTTTTTCTCTTTTAACAAGCGTCGTAGCTGCTGAAACAGTTTACTTATGGTTAATTTCCA
TTTCTGGCGTCATTACAATTATTGTTTGGATGTCAATTTGTGTTTCTCAATTCTTTTTCCGTAAACATTATGTAGCAGAC
GGTGGAAGATTAGAAGACTTAAAATTTAAAACGCCACTTTATCCACTTGTACCAATTCTTGGTTTTGGATTGTATGGCAT
TATATTAGTAAGTCTTATCTTTATCCCAGATCAAAGACTAGGCATTTATTGTACTGTACCATTTATCATCTTTTGCTACA
CTTACTATCACTTTAAAGTGAAGAAAAGAATTTCTACTAACACTTCTAGTGAAAATAAAATTAGCGAGACTATATAA

Upstream 100 bases:

>100_bases
TTTTCTTTTTAATTATCTGAAAATTATAACAAGATTTCACATCACGGAATACATTCCATAATACGGAAAAACATCAAAAT
TTATTCTATCAACTACGAAA

Downstream 100 bases:

>100_bases
TACTCTGCTTATATAAAAGACCGCACATGGCTTTTACTTCATGTGCGGTCTTTTATCCTTCTAATTCGCTTTAAAATTAT
ACAACGGCTTAATAATGTGT

Product: amino acid permease family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MRKTMSQVNNTNNELKRTMKSRHLFMIALGGVIGTELFNGSGFIISQAGPGGSVLAFMAGGLLMYFVMLCLGELAVAMPV
SGSFQEYATKFINPATGFTIGWLYWLSWANTTGLEFTTAGITMQRWFPDIPVWVWCLIFGVTIFMINALSARSYAETEFW
FSSIKVSAIIAFIILGGAAMFGLIDLKGDEPAPLLSNFVNHGGLFPNGLAAILLTMVTVNYSFQGTELVGIAAGESEDPA
KTLPRSIRNIIWRTMFFFVLAIFVLVALIPWEEAGLTKSPFVAVFDNISIPYAADIMNFVILTAVLSVANSGLYAATRML
WSLSKNEMAPAFLKKLSSRGIPLNALILTISISAFSLLTSVVAAETVYLWLISISGVITIIVWMSICVSQFFFRKHYVAD
GGRLEDLKFKTPLYPLVPILGFGLYGIILVSLIFIPDQRLGIYCTVPFIIFCYTYYHFKVKKRISTNTSSENKISETI

Sequences:

>Translated_478_residues
MRKTMSQVNNTNNELKRTMKSRHLFMIALGGVIGTELFNGSGFIISQAGPGGSVLAFMAGGLLMYFVMLCLGELAVAMPV
SGSFQEYATKFINPATGFTIGWLYWLSWANTTGLEFTTAGITMQRWFPDIPVWVWCLIFGVTIFMINALSARSYAETEFW
FSSIKVSAIIAFIILGGAAMFGLIDLKGDEPAPLLSNFVNHGGLFPNGLAAILLTMVTVNYSFQGTELVGIAAGESEDPA
KTLPRSIRNIIWRTMFFFVLAIFVLVALIPWEEAGLTKSPFVAVFDNISIPYAADIMNFVILTAVLSVANSGLYAATRML
WSLSKNEMAPAFLKKLSSRGIPLNALILTISISAFSLLTSVVAAETVYLWLISISGVITIIVWMSICVSQFFFRKHYVAD
GGRLEDLKFKTPLYPLVPILGFGLYGIILVSLIFIPDQRLGIYCTVPFIIFCYTYYHFKVKKRISTNTSSENKISETI
>Mature_478_residues
MRKTMSQVNNTNNELKRTMKSRHLFMIALGGVIGTELFNGSGFIISQAGPGGSVLAFMAGGLLMYFVMLCLGELAVAMPV
SGSFQEYATKFINPATGFTIGWLYWLSWANTTGLEFTTAGITMQRWFPDIPVWVWCLIFGVTIFMINALSARSYAETEFW
FSSIKVSAIIAFIILGGAAMFGLIDLKGDEPAPLLSNFVNHGGLFPNGLAAILLTMVTVNYSFQGTELVGIAAGESEDPA
KTLPRSIRNIIWRTMFFFVLAIFVLVALIPWEEAGLTKSPFVAVFDNISIPYAADIMNFVILTAVLSVANSGLYAATRML
WSLSKNEMAPAFLKKLSSRGIPLNALILTISISAFSLLTSVVAAETVYLWLISISGVITIIVWMSICVSQFFFRKHYVAD
GGRLEDLKFKTPLYPLVPILGFGLYGIILVSLIFIPDQRLGIYCTVPFIIFCYTYYHFKVKKRISTNTSSENKISETI

Specific function: Putative transport protein involved in arginine degradative pathway. Probably transports arginine or ornithine [H]

COG id: COG0833

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Escherichia coli, GI87081708, Length=467, Percent_Identity=51.6059957173448, Blast_Score=492, Evalue=1e-140,
Organism=Escherichia coli, GI1788480, Length=416, Percent_Identity=46.1538461538462, Blast_Score=375, Evalue=1e-105,
Organism=Escherichia coli, GI1786789, Length=463, Percent_Identity=37.3650107991361, Blast_Score=306, Evalue=1e-84,
Organism=Escherichia coli, GI1789017, Length=455, Percent_Identity=38.4615384615385, Blast_Score=294, Evalue=7e-81,
Organism=Escherichia coli, GI1786302, Length=457, Percent_Identity=33.9168490153173, Blast_Score=280, Evalue=2e-76,
Organism=Escherichia coli, GI48994972, Length=443, Percent_Identity=35.4401805869075, Blast_Score=276, Evalue=1e-75,
Organism=Escherichia coli, GI1786602, Length=465, Percent_Identity=33.9784946236559, Blast_Score=253, Evalue=2e-68,
Organism=Escherichia coli, GI87081915, Length=473, Percent_Identity=32.76955602537, Blast_Score=248, Evalue=9e-67,
Organism=Escherichia coli, GI1790653, Length=461, Percent_Identity=32.7548806941432, Blast_Score=241, Evalue=5e-65,
Organism=Escherichia coli, GI87081869, Length=238, Percent_Identity=26.890756302521, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6320772, Length=441, Percent_Identity=34.4671201814059, Blast_Score=261, Evalue=2e-70,
Organism=Saccharomyces cerevisiae, GI6324061, Length=432, Percent_Identity=31.712962962963, Blast_Score=241, Evalue=2e-64,
Organism=Saccharomyces cerevisiae, GI6324553, Length=406, Percent_Identity=34.9753694581281, Blast_Score=224, Evalue=2e-59,
Organism=Saccharomyces cerevisiae, GI6324059, Length=432, Percent_Identity=32.4074074074074, Blast_Score=224, Evalue=3e-59,
Organism=Saccharomyces cerevisiae, GI6322892, Length=412, Percent_Identity=34.7087378640777, Blast_Score=214, Evalue=2e-56,
Organism=Saccharomyces cerevisiae, GI6320717, Length=429, Percent_Identity=29.8368298368298, Blast_Score=207, Evalue=4e-54,
Organism=Saccharomyces cerevisiae, GI6321629, Length=422, Percent_Identity=31.9905213270142, Blast_Score=204, Evalue=2e-53,
Organism=Saccharomyces cerevisiae, GI6319824, Length=422, Percent_Identity=30.0947867298578, Blast_Score=204, Evalue=3e-53,
Organism=Saccharomyces cerevisiae, GI6320251, Length=421, Percent_Identity=30.8788598574822, Blast_Score=196, Evalue=5e-51,
Organism=Saccharomyces cerevisiae, GI6319542, Length=441, Percent_Identity=30.3854875283447, Blast_Score=189, Evalue=6e-49,
Organism=Saccharomyces cerevisiae, GI6324990, Length=415, Percent_Identity=29.8795180722892, Blast_Score=189, Evalue=9e-49,
Organism=Saccharomyces cerevisiae, GI6324924, Length=488, Percent_Identity=28.0737704918033, Blast_Score=189, Evalue=1e-48,
Organism=Saccharomyces cerevisiae, GI6319543, Length=418, Percent_Identity=27.9904306220096, Blast_Score=188, Evalue=1e-48,
Organism=Saccharomyces cerevisiae, GI6321053, Length=419, Percent_Identity=27.9236276849642, Blast_Score=187, Evalue=2e-48,
Organism=Saccharomyces cerevisiae, GI6322967, Length=457, Percent_Identity=30.6345733041575, Blast_Score=184, Evalue=2e-47,
Organism=Saccharomyces cerevisiae, GI6324981, Length=505, Percent_Identity=30.2970297029703, Blast_Score=168, Evalue=2e-42,
Organism=Saccharomyces cerevisiae, GI6319608, Length=433, Percent_Identity=24.7113163972286, Blast_Score=156, Evalue=6e-39,
Organism=Saccharomyces cerevisiae, GI6320364, Length=94, Percent_Identity=38.2978723404255, Blast_Score=72, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293
- InterPro:   IPR004840 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 52728; Mature: 52728

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: PS00218 AMINO_ACID_PERMEASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKTMSQVNNTNNELKRTMKSRHLFMIALGGVIGTELFNGSGFIISQAGPGGSVLAFMAG
CCCHHHHHHCCHHHHHHHHHHCCEEEEEHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHH
GLLMYFVMLCLGELAVAMPVSGSFQEYATKFINPATGFTIGWLYWLSWANTTGLEFTTAG
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEECC
ITMQRWFPDIPVWVWCLIFGVTIFMINALSARSYAETEFWFSSIKVSAIIAFIILGGAAM
EEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGLIDLKGDEPAPLLSNFVNHGGLFPNGLAAILLTMVTVNYSFQGTELVGIAAGESEDPA
HEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHH
KTLPRSIRNIIWRTMFFFVLAIFVLVALIPWEEAGLTKSPFVAVFDNISIPYAADIMNFV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHH
ILTAVLSVANSGLYAATRMLWSLSKNEMAPAFLKKLSSRGIPLNALILTISISAFSLLTS
HHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHH
VVAAETVYLWLISISGVITIIVWMSICVSQFFFRKHYVADGGRLEDLKFKTPLYPLVPIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
GFGLYGIILVSLIFIPDQRLGIYCTVPFIIFCYTYYHFKVKKRISTNTSSENKISETI
HHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCC
>Mature Secondary Structure
MRKTMSQVNNTNNELKRTMKSRHLFMIALGGVIGTELFNGSGFIISQAGPGGSVLAFMAG
CCCHHHHHHCCHHHHHHHHHHCCEEEEEHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHH
GLLMYFVMLCLGELAVAMPVSGSFQEYATKFINPATGFTIGWLYWLSWANTTGLEFTTAG
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEECC
ITMQRWFPDIPVWVWCLIFGVTIFMINALSARSYAETEFWFSSIKVSAIIAFIILGGAAM
EEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGLIDLKGDEPAPLLSNFVNHGGLFPNGLAAILLTMVTVNYSFQGTELVGIAAGESEDPA
HEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHH
KTLPRSIRNIIWRTMFFFVLAIFVLVALIPWEEAGLTKSPFVAVFDNISIPYAADIMNFV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHH
ILTAVLSVANSGLYAATRMLWSLSKNEMAPAFLKKLSSRGIPLNALILTISISAFSLLTS
HHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHH
VVAAETVYLWLISISGVITIIVWMSICVSQFFFRKHYVADGGRLEDLKFKTPLYPLVPIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
GFGLYGIILVSLIFIPDQRLGIYCTVPFIIFCYTYYHFKVKKRISTNTSSENKISETI
HHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]