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The map label for this gene is lsrR [H]

Identifier: 49185773

GI number: 49185773

Start: 2747883

End: 2748971

Strand: Direct

Name: lsrR [H]

Synonym: BAS2767

Alternate gene names: 49185773

Gene position: 2747883-2748971 (Clockwise)

Preceding gene: 49185768

Following gene: 49185774

Centisome position: 52.55

GC content: 37.37

Gene sequence:

>1089_bases
ATGATTATTTGTTCTACTTGTTTTGTAGCATTGTATATTCCTTTTTTATATCTAGAACACTTTTTTCTACGTACTATTAA
TCGCTTCAACTGGAATAAACAAAATATATGGTACATATGTTTAAGCTGTGGTCAATTGTTGAAAGGGATGAAAAGTATGA
CTCAGCTGAACTTTGAAGAGAATTTATTAACGAAAGTAGCTTGGTACTATTATAAGGACCAATTAACACAACAGGAGATC
GCTTCACTTCTTCATATTTCAAGAAATAAAGTCGTCCGGTTATTAGATAAGGCGCGGAGTGAAGGTATCGTTACATTTCA
CGTAAAAGGGACTGGTTTGCACTGTTTAAGTATTGAGCGTGACCTAATGAAAAAATTCCACTTAAAAGATGCTTTTATTA
TCCCGACCCCATTAAACAATTATCACGATTCTCTCGGAAAAGCTGCTGCACAATATTTAGAAACTCAGCTCCAGCAAGGC
GATTTACTCGGTATTGGCTGGGGAGAAACAATTAGCAAAATGCTAGAAAACATTCATTTCGAAAGTTCTATTAATCTCTC
AATCGTAACGTTAACAGGCGGAGTAAATCACTATCTCCCGAGAAAACAAAACTATTTACATTACATGCAAGGTGATCTTC
ACATTATCCCTACGCCGTTTCTAGCGTCTACAACCGAAATGGCACAAAGTATTCTATCAGAACCGAGCGTAAAAGATATG
CTTCATGTCGCTTCACTTGCTCATACGGCTGTTGTCGGTATTGGAGGACTATCTCAAGATGCTACGATTGTAAAAGAAGA
AAAATTAACTTTACGTGAGATGACATATATTCGTAGTCAAAACGGTGCTGGCGATATTTTAGGACAGTTTTATGATACAA
ATGGCGGTTTATTAGAGCTCTCGCATCACAATCGTCTAATTGGCACGCCCCTCCCTGTTTTGCGCAATATGAAGCATGTC
GTCGGTGTTGCTGGAGGTACTGAAAAGATAGATGCAATTTATGGTGCCTTAAAAGGAAAGTTTATTCATACATTAATTAC
CGATGAGGAAACTGCCCTTTCCTTATTACGAAAGGATGGTGATTGTTAA

Upstream 100 bases:

>100_bases
CAAGTTGATTTAAAAACGCCTTACTCATTTTTTTACTTGTAATAAAGGTGCGTTCTCCACATGATGTCACCTGCCTTTAT
ACAGAACATTATTTGAGAAA

Downstream 100 bases:

>100_bases
TGTCCAATTTATTAGCTTTCGATGCTGGTACAGGAAGTATTCGAGCAGTTCTTTTTGATTTACATGGTAATCAAATTGCA
GTAAGTCAAAAAGAATGGAT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MIICSTCFVALYIPFLYLEHFFLRTINRFNWNKQNIWYICLSCGQLLKGMKSMTQLNFEENLLTKVAWYYYKDQLTQQEI
ASLLHISRNKVVRLLDKARSEGIVTFHVKGTGLHCLSIERDLMKKFHLKDAFIIPTPLNNYHDSLGKAAAQYLETQLQQG
DLLGIGWGETISKMLENIHFESSINLSIVTLTGGVNHYLPRKQNYLHYMQGDLHIIPTPFLASTTEMAQSILSEPSVKDM
LHVASLAHTAVVGIGGLSQDATIVKEEKLTLREMTYIRSQNGAGDILGQFYDTNGGLLELSHHNRLIGTPLPVLRNMKHV
VGVAGGTEKIDAIYGALKGKFIHTLITDEETALSLLRKDGDC

Sequences:

>Translated_362_residues
MIICSTCFVALYIPFLYLEHFFLRTINRFNWNKQNIWYICLSCGQLLKGMKSMTQLNFEENLLTKVAWYYYKDQLTQQEI
ASLLHISRNKVVRLLDKARSEGIVTFHVKGTGLHCLSIERDLMKKFHLKDAFIIPTPLNNYHDSLGKAAAQYLETQLQQG
DLLGIGWGETISKMLENIHFESSINLSIVTLTGGVNHYLPRKQNYLHYMQGDLHIIPTPFLASTTEMAQSILSEPSVKDM
LHVASLAHTAVVGIGGLSQDATIVKEEKLTLREMTYIRSQNGAGDILGQFYDTNGGLLELSHHNRLIGTPLPVLRNMKHV
VGVAGGTEKIDAIYGALKGKFIHTLITDEETALSLLRKDGDC
>Mature_362_residues
MIICSTCFVALYIPFLYLEHFFLRTINRFNWNKQNIWYICLSCGQLLKGMKSMTQLNFEENLLTKVAWYYYKDQLTQQEI
ASLLHISRNKVVRLLDKARSEGIVTFHVKGTGLHCLSIERDLMKKFHLKDAFIIPTPLNNYHDSLGKAAAQYLETQLQQG
DLLGIGWGETISKMLENIHFESSINLSIVTLTGGVNHYLPRKQNYLHYMQGDLHIIPTPFLASTTEMAQSILSEPSVKDM
LHVASLAHTAVVGIGGLSQDATIVKEEKLTLREMTYIRSQNGAGDILGQFYDTNGGLLELSHHNRLIGTPLPVLRNMKHV
VGVAGGTEKIDAIYGALKGKFIHTLITDEETALSLLRKDGDC

Specific function: Regulates transcription of many different genes. In the absence of autoinducer 2 (AI-2), represses transcription of the lsrACDBFG operon and its own transcription. In the presence of AI- 2, lsrR is inactivated by binding phospho-AI-2, leading to the trans

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=304, Percent_Identity=38.1578947368421, Blast_Score=196, Evalue=3e-51,
Organism=Escherichia coli, GI87082414, Length=312, Percent_Identity=25.6410256410256, Blast_Score=125, Evalue=5e-30,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 40753; Mature: 40753

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIICSTCFVALYIPFLYLEHFFLRTINRFNWNKQNIWYICLSCGQLLKGMKSMTQLNFEE
CEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHCCHHH
NLLTKVAWYYYKDQLTQQEIASLLHISRNKVVRLLDKARSEGIVTFHVKGTGLHCLSIER
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEHHHH
DLMKKFHLKDAFIIPTPLNNYHDSLGKAAAQYLETQLQQGDLLGIGWGETISKMLENIHF
HHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHCCC
ESSINLSIVTLTGGVNHYLPRKQNYLHYMQGDLHIIPTPFLASTTEMAQSILSEPSVKDM
CCCCCEEEEEEECCCHHCCCCCCCCHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCHHHH
LHVASLAHTAVVGIGGLSQDATIVKEEKLTLREMTYIRSQNGAGDILGQFYDTNGGLLEL
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHEECCCCCEEEE
SHHNRLIGTPLPVLRNMKHVVGVAGGTEKIDAIYGALKGKFIHTLITDEETALSLLRKDG
CCCCCCCCCCHHHHHCCHHHHCCCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCC
DC
CC
>Mature Secondary Structure
MIICSTCFVALYIPFLYLEHFFLRTINRFNWNKQNIWYICLSCGQLLKGMKSMTQLNFEE
CEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHCCHHH
NLLTKVAWYYYKDQLTQQEIASLLHISRNKVVRLLDKARSEGIVTFHVKGTGLHCLSIER
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEHHHH
DLMKKFHLKDAFIIPTPLNNYHDSLGKAAAQYLETQLQQGDLLGIGWGETISKMLENIHF
HHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHCCC
ESSINLSIVTLTGGVNHYLPRKQNYLHYMQGDLHIIPTPFLASTTEMAQSILSEPSVKDM
CCCCCEEEEEEECCCHHCCCCCCCCHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCHHHH
LHVASLAHTAVVGIGGLSQDATIVKEEKLTLREMTYIRSQNGAGDILGQFYDTNGGLLEL
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHEECCCCCEEEE
SHHNRLIGTPLPVLRNMKHVVGVAGGTEKIDAIYGALKGKFIHTLITDEETALSLLRKDG
CCCCCCCCCCHHHHHCCHHHHCCCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCC
DC
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 14528314 [H]