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The map label for this gene is secY [H]

Identifier: 49185555

GI number: 49185555

Start: 2549510

End: 2550814

Strand: Direct

Name: secY [H]

Synonym: BAS2547

Alternate gene names: 49185555

Gene position: 2549510-2550814 (Clockwise)

Preceding gene: 49185546

Following gene: 49185558

Centisome position: 48.76

GC content: 35.56

Gene sequence:

>1305_bases
ATGTTTCGTACGATTTCAAATTTCATGAGAGTAGCTGAGATAAGAAGGAAAATCCTTTTTACATTAGCGATGTTAATCGT
TTTTCGAATTGGCACGTTTATTCCAGTTCCTCATACTAACGCAGAGGTATTAAAAATACAAGATCAAGCTAACGTTTTAG
GTATGCTAAACGTATTTGGCGGAGGAGCATTGCAACACTTCTCAATCTTTGCTGTAGGTATTACACCATATATTACAGCT
TCCATCATAGTACAATTACTACAAATGGACGTTATACCAAAATTTTCGGAATGGGCAAAGCAAGGAGAAATGGGTCGTAA
GAAATCAGCTCAATTTACTCGATACTTTACAATCATTCTCGCATTCATACAAGCCATTGGGATGTCTTATGGCTTTAATA
ATATAGCAGGTGGACAATTAATAACAGATCAAAGCTGGACTACATACTTATTTATTGCAACAGTTTTAACTGCAGGTACT
GCATTTTTACTTTGGTTAGGTGAACAAATTACCGCTAATGGAGTAGGTAATGGTATTTCGATGCTTATCTTCGCAGGACT
TGTAGCAGCGATTCCAAATGTTGCGAATCAAATTTATTTACAACAATTTCAAAATGCAGGCGATCAATTATTCATGCACA
TCATAAAAATGCTCTTAATTGGTCTCGTAATTTTAGCGATCGTTGTTGGGGTTATTTACATTCAACAAGCTGTGCGTAAA
ATACCGATTCAATATGCAAAAGCTGTTTCAGGAAACAATCAATATCAAGGAGCAAAAAACACTCATTTACCTCTAAAAGT
AAATAGTGCTGGTGTAATTCCAGTCATCTTTGCTTCCGCATTTTTAATGACGCCGCGTACAATTGCGCAGCTCTTCCCTG
ATTCAAGCGTATCAAAATGGTTAGTTGCAAACCTTGATTTCGCACATCCAATTGGAATGACACTATATGTAGGTCTTATC
GTTGCTTTTACATACTTCTATGCATTTATTCAAGTGAATCCTGAACAAATGGCAGAGAATTTGAAAAAGCAAAATGGTTA
TGTACCTTGTATTCGTCCTGGTAAATCAACAGAACAATATGTAACGAAAATTTTATACCGTTTAACATTTATCGGTGCAA
TTTTCTTAGGTGCAATTTCAATTTTACCGCTTGTATTCACAAAGATTGCTACATTACCACCTTCTGCACAAATTGGTGGT
ACAAGCTTACTGATCATTGTCGGTGTGGCACTTGAAACAATGAAAACGTTAGAAAGTCAGCTTGTAAAACGTCATTATAA
AGGGTTTATAAAAAAAGCGAATTAA

Upstream 100 bases:

>100_bases
TCCATTTGTCAAATGAATTTAATGCGGAAGGAGGTTTGTGGTTACTTCATCGGGATATAATAATCAGTTTTAAACTGATA
AAAATATAGGAGGCGACATA

Downstream 100 bases:

>100_bases
GTAAAAAAACACAGTTGGTTATTTTTCCAACTGTGTTTTTAATTCTACTGCATCTAATTTTTCTACTAATGTACCAATGA
CCTTTTCCAAGTTCATTATT

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 434

Protein sequence:

>434_residues
MFRTISNFMRVAEIRRKILFTLAMLIVFRIGTFIPVPHTNAEVLKIQDQANVLGMLNVFGGGALQHFSIFAVGITPYITA
SIIVQLLQMDVIPKFSEWAKQGEMGRKKSAQFTRYFTIILAFIQAIGMSYGFNNIAGGQLITDQSWTTYLFIATVLTAGT
AFLLWLGEQITANGVGNGISMLIFAGLVAAIPNVANQIYLQQFQNAGDQLFMHIIKMLLIGLVILAIVVGVIYIQQAVRK
IPIQYAKAVSGNNQYQGAKNTHLPLKVNSAGVIPVIFASAFLMTPRTIAQLFPDSSVSKWLVANLDFAHPIGMTLYVGLI
VAFTYFYAFIQVNPEQMAENLKKQNGYVPCIRPGKSTEQYVTKILYRLTFIGAIFLGAISILPLVFTKIATLPPSAQIGG
TSLLIIVGVALETMKTLESQLVKRHYKGFIKKAN

Sequences:

>Translated_434_residues
MFRTISNFMRVAEIRRKILFTLAMLIVFRIGTFIPVPHTNAEVLKIQDQANVLGMLNVFGGGALQHFSIFAVGITPYITA
SIIVQLLQMDVIPKFSEWAKQGEMGRKKSAQFTRYFTIILAFIQAIGMSYGFNNIAGGQLITDQSWTTYLFIATVLTAGT
AFLLWLGEQITANGVGNGISMLIFAGLVAAIPNVANQIYLQQFQNAGDQLFMHIIKMLLIGLVILAIVVGVIYIQQAVRK
IPIQYAKAVSGNNQYQGAKNTHLPLKVNSAGVIPVIFASAFLMTPRTIAQLFPDSSVSKWLVANLDFAHPIGMTLYVGLI
VAFTYFYAFIQVNPEQMAENLKKQNGYVPCIRPGKSTEQYVTKILYRLTFIGAIFLGAISILPLVFTKIATLPPSAQIGG
TSLLIIVGVALETMKTLESQLVKRHYKGFIKKAN
>Mature_434_residues
MFRTISNFMRVAEIRRKILFTLAMLIVFRIGTFIPVPHTNAEVLKIQDQANVLGMLNVFGGGALQHFSIFAVGITPYITA
SIIVQLLQMDVIPKFSEWAKQGEMGRKKSAQFTRYFTIILAFIQAIGMSYGFNNIAGGQLITDQSWTTYLFIATVLTAGT
AFLLWLGEQITANGVGNGISMLIFAGLVAAIPNVANQIYLQQFQNAGDQLFMHIIKMLLIGLVILAIVVGVIYIQQAVRK
IPIQYAKAVSGNNQYQGAKNTHLPLKVNSAGVIPVIFASAFLMTPRTIAQLFPDSSVSKWLVANLDFAHPIGMTLYVGLI
VAFTYFYAFIQVNPEQMAENLKKQNGYVPCIRPGKSTEQYVTKILYRLTFIGAIFLGAISILPLVFTKIATLPPSAQIGG
TSLLIIVGVALETMKTLESQLVKRHYKGFIKKAN

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=431, Percent_Identity=41.7633410672854, Blast_Score=288, Evalue=6e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 47800; Mature: 47800

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: PS00755 SECY_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRTISNFMRVAEIRRKILFTLAMLIVFRIGTFIPVPHTNAEVLKIQDQANVLGMLNVFG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHC
GGALQHFSIFAVGITPYITASIIVQLLQMDVIPKFSEWAKQGEMGRKKSAQFTRYFTIIL
CCHHHHHHHEEECHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
AFIQAIGMSYGFNNIAGGQLITDQSWTTYLFIATVLTAGTAFLLWLGEQITANGVGNGIS
HHHHHHHHHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHH
MLIFAGLVAAIPNVANQIYLQQFQNAGDQLFMHIIKMLLIGLVILAIVVGVIYIQQAVRK
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IPIQYAKAVSGNNQYQGAKNTHLPLKVNSAGVIPVIFASAFLMTPRTIAQLFPDSSVSKW
CCHHHHHHHCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCHH
LVANLDFAHPIGMTLYVGLIVAFTYFYAFIQVNPEQMAENLKKQNGYVPCIRPGKSTEQY
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHCCCCCEECCCCCHHHH
VTKILYRLTFIGAIFLGAISILPLVFTKIATLPPSAQIGGTSLLIIVGVALETMKTLESQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LVKRHYKGFIKKAN
HHHHHHHHHHCCCC
>Mature Secondary Structure
MFRTISNFMRVAEIRRKILFTLAMLIVFRIGTFIPVPHTNAEVLKIQDQANVLGMLNVFG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHC
GGALQHFSIFAVGITPYITASIIVQLLQMDVIPKFSEWAKQGEMGRKKSAQFTRYFTIIL
CCHHHHHHHEEECHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
AFIQAIGMSYGFNNIAGGQLITDQSWTTYLFIATVLTAGTAFLLWLGEQITANGVGNGIS
HHHHHHHHHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHH
MLIFAGLVAAIPNVANQIYLQQFQNAGDQLFMHIIKMLLIGLVILAIVVGVIYIQQAVRK
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IPIQYAKAVSGNNQYQGAKNTHLPLKVNSAGVIPVIFASAFLMTPRTIAQLFPDSSVSKW
CCHHHHHHHCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCHH
LVANLDFAHPIGMTLYVGLIVAFTYFYAFIQVNPEQMAENLKKQNGYVPCIRPGKSTEQY
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHCCCCCEECCCCCHHHH
VTKILYRLTFIGAIFLGAISILPLVFTKIATLPPSAQIGGTSLLIIVGVALETMKTLESQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LVKRHYKGFIKKAN
HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1435726 [H]