Click here to switch to the map view.

The map label for this gene is yhdP [H]

Identifier: 49185143

GI number: 49185143

Start: 2134810

End: 2136165

Strand: Direct

Name: yhdP [H]

Synonym: BAS2134

Alternate gene names: 49185143

Gene position: 2134810-2136165 (Clockwise)

Preceding gene: 49185141

Following gene: 49185144

Centisome position: 40.83

GC content: 32.3

Gene sequence:

>1356_bases
TTGGACATATATAGTATAAGTATAGTGATTGTTTTAATTGCCTTAACGGCATTTTTCGTTGCAGCAGAGTTTGCAATTGT
TAAAGTACGAAGTTCACGAATTGACTATTTAATTGCAGAAGGAAATAATCGTGCAACATCTGTCAAAACAGTCATTACAA
ACTTAGACGAATATTTATCTGCTTGTCAGCTAGGAATAACAGTTACAGCACTGGGAATTGGGTGGTTTGGTAAACCAGCA
TTAAAGCAAATGTTTGACACGCTTTTTGTGAATTTGAACATTTCTACTCAACTGGCAGACATTTTTGCTGTAATTTTAGT
GTTTTTGTTTATTACATTTTTACATGTTGTAATAGGGGAATTGGCCCCAAAAACATTTGCGATTCAAAAAGCTGAGCAGG
TAAGTTTATTTGTTGCTAAACCGTTAACTTTCTTTTATCGTATGGCATTTCCATTTATTTGGCTATTAAATGGATCAGCC
CGAATTATTACGAAGTTGTTAGGGCTGAAACCACCGAAAGGGCACGATGAAGTTCATTCAGAAGAAGAATTACGGTTGTT
AGTTTCAGAAAGTTACAAAAATGGAGAGATTAATCAGTCTGAATATAAATATGTAAATAAAATCTTTGAATTTGATGATC
GTATAGCAAAAGAAATAATGGTACCCCGAACTGAGATGCATATTATAAGGAAAGAAATGCCTGCTGAAGAAGCTTTGCAA
AAGATGTCTCGGGAAAAATATACAAGATATCCAGTTGTTGATGGAGACAAAGATCACGTAATAGGCTTTGTGAACTTTAA
AGATATTTTTACAGATTTTGTGCAGCATAAAGCGGTTCGTAATAAGAAAGTAGAGCAATATATTAGGCCGATTATTTTAG
TTATTGACTCTATCCCAATACACGACTTATTTTTAAAAATGCAAAAACAAAGAACACATATTGCTATATTGATAGATGAA
TATGGTGGTACGTCTGGACTTGTTACTGTTGAAGACATTTTAGAAGAAATAGTTGGAGATATTCAAGATGAATTTGATAC
AGATGAACAGCCAGAAATTCAACAAGTTAGTGAAACGAAAACGATACTAGAGGGAAAAGTACTTGTTAGTGAAGTAAATA
CGTTATTAGGTTTAACAATAGATGATAATGGTGTTGATACAATTGGCGGATGGATTTTAACGAAAAATATAGAAATTGCT
GAAGAGGATTTCATTGAAATCGAAAATTATAAGTTTTGCGTGAAAGAATTAGATGGACACTATATAAAGAGATTAGAAGT
TACAAAAACTGTAGAATCAATTGTTATTTTAGAAGATGAAAAACAAATTTCATTACAAGAACAAATTAGTTCGTAG

Upstream 100 bases:

>100_bases
TAATGTAGAATTTTGTTAGAGTATTAGAATGCTTACTTCACTTGAATAAAATTAAGTAGGAGGTGGCTTCCTTGCTTACA
ATGTAAGTAAGGAAAAGTAT

Downstream 100 bases:

>100_bases
ACTCTGCTAGATGGCAGAGTTTTTTTGAGCATAATGTTTTTGGCAAAATAAGGGCTATGTTACAATGGAATAAGTCAGAC
CTTTCACTAGGTGAAGTATT

Product: CBS domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 451; Mature: 451

Protein sequence:

>451_residues
MDIYSISIVIVLIALTAFFVAAEFAIVKVRSSRIDYLIAEGNNRATSVKTVITNLDEYLSACQLGITVTALGIGWFGKPA
LKQMFDTLFVNLNISTQLADIFAVILVFLFITFLHVVIGELAPKTFAIQKAEQVSLFVAKPLTFFYRMAFPFIWLLNGSA
RIITKLLGLKPPKGHDEVHSEEELRLLVSESYKNGEINQSEYKYVNKIFEFDDRIAKEIMVPRTEMHIIRKEMPAEEALQ
KMSREKYTRYPVVDGDKDHVIGFVNFKDIFTDFVQHKAVRNKKVEQYIRPIILVIDSIPIHDLFLKMQKQRTHIAILIDE
YGGTSGLVTVEDILEEIVGDIQDEFDTDEQPEIQQVSETKTILEGKVLVSEVNTLLGLTIDDNGVDTIGGWILTKNIEIA
EEDFIEIENYKFCVKELDGHYIKRLEVTKTVESIVILEDEKQISLQEQISS

Sequences:

>Translated_451_residues
MDIYSISIVIVLIALTAFFVAAEFAIVKVRSSRIDYLIAEGNNRATSVKTVITNLDEYLSACQLGITVTALGIGWFGKPA
LKQMFDTLFVNLNISTQLADIFAVILVFLFITFLHVVIGELAPKTFAIQKAEQVSLFVAKPLTFFYRMAFPFIWLLNGSA
RIITKLLGLKPPKGHDEVHSEEELRLLVSESYKNGEINQSEYKYVNKIFEFDDRIAKEIMVPRTEMHIIRKEMPAEEALQ
KMSREKYTRYPVVDGDKDHVIGFVNFKDIFTDFVQHKAVRNKKVEQYIRPIILVIDSIPIHDLFLKMQKQRTHIAILIDE
YGGTSGLVTVEDILEEIVGDIQDEFDTDEQPEIQQVSETKTILEGKVLVSEVNTLLGLTIDDNGVDTIGGWILTKNIEIA
EEDFIEIENYKFCVKELDGHYIKRLEVTKTVESIVILEDEKQISLQEQISS
>Mature_451_residues
MDIYSISIVIVLIALTAFFVAAEFAIVKVRSSRIDYLIAEGNNRATSVKTVITNLDEYLSACQLGITVTALGIGWFGKPA
LKQMFDTLFVNLNISTQLADIFAVILVFLFITFLHVVIGELAPKTFAIQKAEQVSLFVAKPLTFFYRMAFPFIWLLNGSA
RIITKLLGLKPPKGHDEVHSEEELRLLVSESYKNGEINQSEYKYVNKIFEFDDRIAKEIMVPRTEMHIIRKEMPAEEALQ
KMSREKYTRYPVVDGDKDHVIGFVNFKDIFTDFVQHKAVRNKKVEQYIRPIILVIDSIPIHDLFLKMQKQRTHIAILIDE
YGGTSGLVTVEDILEEIVGDIQDEFDTDEQPEIQQVSETKTILEGKVLVSEVNTLLGLTIDDNGVDTIGGWILTKNIEIA
EEDFIEIENYKFCVKELDGHYIKRLEVTKTVESIVILEDEKQISLQEQISS

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=405, Percent_Identity=45.1851851851852, Blast_Score=377, Evalue=1e-104,
Organism=Escherichia coli, GI1790664, Length=429, Percent_Identity=24.7086247086247, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI145693175, Length=418, Percent_Identity=23.6842105263158, Blast_Score=121, Evalue=9e-29,
Organism=Escherichia coli, GI1786879, Length=254, Percent_Identity=30.7086614173228, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI87082033, Length=235, Percent_Identity=22.9787234042553, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1788119, Length=237, Percent_Identity=22.7848101265823, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 51380; Mature: 51380

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIYSISIVIVLIALTAFFVAAEFAIVKVRSSRIDYLIAEGNNRATSVKTVITNLDEYLS
CCEEHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHH
ACQLGITVTALGIGWFGKPALKQMFDTLFVNLNISTQLADIFAVILVFLFITFLHVVIGE
HHHHCCEEEEEECCCCCCHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
LAPKTFAIQKAEQVSLFVAKPLTFFYRMAFPFIWLLNGSARIITKLLGLKPPKGHDEVHS
HCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHCCCCCCCCCCCCC
EEELRLLVSESYKNGEINQSEYKYVNKIFEFDDRIAKEIMVPRTEMHIIRKEMPAEEALQ
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHH
KMSREKYTRYPVVDGDKDHVIGFVNFKDIFTDFVQHKAVRNKKVEQYIRPIILVIDSIPI
HHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
HDLFLKMQKQRTHIAILIDEYGGTSGLVTVEDILEEIVGDIQDEFDTDEQPEIQQVSETK
HHHHHHHHHCCCEEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
TILEGKVLVSEVNTLLGLTIDDNGVDTIGGWILTKNIEIAEEDFIEIENYKFCVKELDGH
HHHHHHHHHHHHHHHEEEEECCCCCCCCCCEEEECCCEECHHHHEECCCHHHHHHHHCCH
YIKRLEVTKTVESIVILEDEKQISLQEQISS
HHHHHHHHHHHHEEEEEECCCHHHHHHHHCC
>Mature Secondary Structure
MDIYSISIVIVLIALTAFFVAAEFAIVKVRSSRIDYLIAEGNNRATSVKTVITNLDEYLS
CCEEHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHH
ACQLGITVTALGIGWFGKPALKQMFDTLFVNLNISTQLADIFAVILVFLFITFLHVVIGE
HHHHCCEEEEEECCCCCCHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
LAPKTFAIQKAEQVSLFVAKPLTFFYRMAFPFIWLLNGSARIITKLLGLKPPKGHDEVHS
HCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHCCCCCCCCCCCCC
EEELRLLVSESYKNGEINQSEYKYVNKIFEFDDRIAKEIMVPRTEMHIIRKEMPAEEALQ
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHH
KMSREKYTRYPVVDGDKDHVIGFVNFKDIFTDFVQHKAVRNKKVEQYIRPIILVIDSIPI
HHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
HDLFLKMQKQRTHIAILIDEYGGTSGLVTVEDILEEIVGDIQDEFDTDEQPEIQQVSETK
HHHHHHHHHCCCEEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
TILEGKVLVSEVNTLLGLTIDDNGVDTIGGWILTKNIEIAEEDFIEIENYKFCVKELDGH
HHHHHHHHHHHHHHHEEEEECCCCCCCCCCEEEECCCEECHHHHEECCCHHHHHHHHCCH
YIKRLEVTKTVESIVILEDEKQISLQEQISS
HHHHHHHHHHHHEEEEEECCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]