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The map label for this gene is rpiR [C]

Identifier: 49185121

GI number: 49185121

Start: 2111513

End: 2111902

Strand: Direct

Name: rpiR [C]

Synonym: BAS2110

Alternate gene names: 49185121

Gene position: 2111513-2111902 (Clockwise)

Preceding gene: 49185120

Following gene: 49185122

Centisome position: 40.38

GC content: 38.21

Gene sequence:

>390_bases
ATGAGAACGGGTATTTCATGTATCGCTCATACCGATTTGCATTTCCGAATTATGGGAGCAGGTTTACTCTCGAAAAATTC
AGTTGTTATCGGCATTTCTCATTCTGATAGCAATAAAGGGTTAGTTGAAGCGTTAGAAGTAGTGAAAGCAAGAGGAGCTA
AACTTATTGCGATTACGAGCTATCAGAAATCGGCATTAAGTCAACTTACTGATATAACGCTCTATACTTCAACACGTGAG
ACAGAATTCCGCACAGAAGCAAGTTCATCACGATTAGCACAGTTAAGTTTAATTGATACTTTGTATGTAGGAGTGTCGTT
GCAACGACAGGAGGAAACGTTAAAACATTTACAAAGTATACGTGAAACGATTTCGATGAGGCGAAAATAA

Upstream 100 bases:

>100_bases
GCTAGAGCAAGCTGTAAAAGCTTTACAAGAAGCGAATCGAATTGAGTTTTATGGAAATGGTGGCTCTGGTATTATTGCGA
CGGATGCGTAGCATAAGTTT

Downstream 100 bases:

>100_bases
GAAAAGCTCTTCAAATGAAGTGCTTTTTTATTTTCTTGTAGAAATATGTGGCTTACTTATAGCCAGTGATAGACTCTCAT
TTTTTAAAATATAAAATAAA

Product: RpiR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MRTGISCIAHTDLHFRIMGAGLLSKNSVVIGISHSDSNKGLVEALEVVKARGAKLIAITSYQKSALSQLTDITLYTSTRE
TEFRTEASSSRLAQLSLIDTLYVGVSLQRQEETLKHLQSIRETISMRRK

Sequences:

>Translated_129_residues
MRTGISCIAHTDLHFRIMGAGLLSKNSVVIGISHSDSNKGLVEALEVVKARGAKLIAITSYQKSALSQLTDITLYTSTRE
TEFRTEASSSRLAQLSLIDTLYVGVSLQRQEETLKHLQSIRETISMRRK
>Mature_129_residues
MRTGISCIAHTDLHFRIMGAGLLSKNSVVIGISHSDSNKGLVEALEVVKARGAKLIAITSYQKSALSQLTDITLYTSTRE
TEFRTEASSSRLAQLSLIDTLYVGVSLQRQEETLKHLQSIRETISMRRK

Specific function: Regulatory Protein Involved In Rpib Gene Repression. Also Involved In Als Operon Repression. [C]

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI87082369, Length=118, Percent_Identity=32.2033898305085, Blast_Score=74, Evalue=4e-15,
Organism=Escherichia coli, GI1788767, Length=118, Percent_Identity=38.135593220339, Blast_Score=70, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 14279; Mature: 14279

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTGISCIAHTDLHFRIMGAGLLSKNSVVIGISHSDSNKGLVEALEVVKARGAKLIAITS
CCCCCCEEEECCEEEEEEECCEECCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEC
YQKSALSQLTDITLYTSTRETEFRTEASSSRLAQLSLIDTLYVGVSLQRQEETLKHLQSI
HHHHHHHHHHHEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHH
RETISMRRK
HHHHHHCCC
>Mature Secondary Structure
MRTGISCIAHTDLHFRIMGAGLLSKNSVVIGISHSDSNKGLVEALEVVKARGAKLIAITS
CCCCCCEEEECCEEEEEEECCEECCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEC
YQKSALSQLTDITLYTSTRETEFRTEASSSRLAQLSLIDTLYVGVSLQRQEETLKHLQSI
HHHHHHHHHHHEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHH
RETISMRRK
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]