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The map label for this gene is 49184640

Identifier: 49184640

GI number: 49184640

Start: 1643309

End: 1643875

Strand: Direct

Name: 49184640

Synonym: BAS1626

Alternate gene names: NA

Gene position: 1643309-1643875 (Clockwise)

Preceding gene: 49184638

Following gene: 49184641

Centisome position: 31.43

GC content: 33.33

Gene sequence:

>567_bases
ATGAAATCAAATGAGAAAGATTATATAAAAAGATTAAAGCGGCAAAAAGAAGATGCGCTAGAATTTGTTGTCGATACATA
TTTACCACTCATAAAGGGAATCACGCACAAAGTTCTTTTTCCAGTTCAAAATGATGGATTGATAGAGGAATGTGTAAATG
ATATTTTCCTATCTATTTGGAATAATGCAAATAAGTTTCATGGAGAGCCAAGTGATTTTAAAAAATGGGTTGCGGCAATT
GCGAAGTTTAAAGCAATTGATTATTACCGGAAAGCGACTAAAAAAGTAGAAATTATTTCAGATGAGTTTCATATCAGTAC
GGAAAAGTCAGCGGAAGATGAATTAATTGTTATGGAAGATAGAGAAGAATTATTGAAGCTTATTAATCAATTAGAACCGT
TAGATCAAAAGGTGTTCATTATGAAATATCTTCTCGGTATGAAGACAGAAGAAATAGGAGACAAGTTAGGATTAACCCGG
GCAGCAATCGATAATCGTGTGTACCGTGGGAAAAAGAAACTACAACAAAATGCTACGAATATTAGTTTTGGAGGTAGTGC
CATATGA

Upstream 100 bases:

>100_bases
CCATTACATACAAAAAATAATAAAAAGATGAGAGAAAATATTTTTTTAGACGTTATATAGGGTGTAAAAGCTTTTACAAA
AAAATAAGGGGAATCGCTAC

Downstream 100 bases:

>100_bases
AAGACATTTATGAACTATTAAATGATATTGATATAGATGAGAAAGAACTTGAGGAAATTGAGGCTTCTGAAATTGAAAAA
GAAAAAGTGAAGCGTAATGT

Product: RNA polymerase factor sigma-70

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor Family; RNA Polymerase Sigma-70 Factor; RNA Polymerase; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-70factor; RNA Polymerase Sigma-24 Subunit

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MKSNEKDYIKRLKRQKEDALEFVVDTYLPLIKGITHKVLFPVQNDGLIEECVNDIFLSIWNNANKFHGEPSDFKKWVAAI
AKFKAIDYYRKATKKVEIISDEFHISTEKSAEDELIVMEDREELLKLINQLEPLDQKVFIMKYLLGMKTEEIGDKLGLTR
AAIDNRVYRGKKKLQQNATNISFGGSAI

Sequences:

>Translated_188_residues
MKSNEKDYIKRLKRQKEDALEFVVDTYLPLIKGITHKVLFPVQNDGLIEECVNDIFLSIWNNANKFHGEPSDFKKWVAAI
AKFKAIDYYRKATKKVEIISDEFHISTEKSAEDELIVMEDREELLKLINQLEPLDQKVFIMKYLLGMKTEEIGDKLGLTR
AAIDNRVYRGKKKLQQNATNISFGGSAI
>Mature_188_residues
MKSNEKDYIKRLKRQKEDALEFVVDTYLPLIKGITHKVLFPVQNDGLIEECVNDIFLSIWNNANKFHGEPSDFKKWVAAI
AKFKAIDYYRKATKKVEIISDEFHISTEKSAEDELIVMEDREELLKLINQLEPLDQKVFIMKYLLGMKTEEIGDKLGLTR
AAIDNRVYRGKKKLQQNATNISFGGSAI

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21728; Mature: 21728

Theoretical pI: Translated: 8.40; Mature: 8.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSNEKDYIKRLKRQKEDALEFVVDTYLPLIKGITHKVLFPVQNDGLIEECVNDIFLSIW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHH
NNANKFHGEPSDFKKWVAAIAKFKAIDYYRKATKKVEIISDEFHISTEKSAEDELIVMED
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCEEEECC
REELLKLINQLEPLDQKVFIMKYLLGMKTEEIGDKLGLTRAAIDNRVYRGKKKLQQNATN
HHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ISFGGSAI
CCCCCCCC
>Mature Secondary Structure
MKSNEKDYIKRLKRQKEDALEFVVDTYLPLIKGITHKVLFPVQNDGLIEECVNDIFLSIW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHH
NNANKFHGEPSDFKKWVAAIAKFKAIDYYRKATKKVEIISDEFHISTEKSAEDELIVMED
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCEEEECC
REELLKLINQLEPLDQKVFIMKYLLGMKTEEIGDKLGLTRAAIDNRVYRGKKKLQQNATN
HHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ISFGGSAI
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA