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The map label for this gene is ycgE [H]

Identifier: 49184416

GI number: 49184416

Start: 1428666

End: 1429544

Strand: Direct

Name: ycgE [H]

Synonym: BAS1399

Alternate gene names: 49184416

Gene position: 1428666-1429544 (Clockwise)

Preceding gene: 49184415

Following gene: 49184417

Centisome position: 27.32

GC content: 33.79

Gene sequence:

>879_bases
ATGATGCCAACTCTAAACGGAAAATATAACATAAAAGCTGTTTCAAAAATAATTGGAGTTCAACCAAGTACGCTTCGTGC
ATGGGAAAGAAGATATCAAATGATTGCCCCAAAGCGGAATCATGCGGGGCATCGATTATATACAGAAGAGCATATTCAAA
TTTTGAAATGGTTAATGGACAAGGTTTCTTCCGGCATGATGATTGGACAAGCAGTTCAATTATTAGAAGGGAATCGTTTG
CAGAATAGTGTTCAAAATGAAATACATTACGATAGAGAAGTTGTTTTAGTGGACGATTTACTACAAGCTTTGTTAAAATT
TGATGAAATTACAACTTCTGCATTGTTAAACGAGGCTTTTAGTATTTATGCAACAGAAAAAGTTATCGCAAGTATTGTTC
TTCAAGTGTCCAATAAATTGTTAACGTTAAAAAATAATAATGAAGTTACAATGGTGCAATTCCAATATGTCTTATCATTT
TTACAAACGCGTCTAGGGATGATATATCATAATGCATCATCGTTTTCTTCTATACACAAAGTTGTTGTGTTAGAAAGTAA
TATGTTGAAAGGGTTTGTTTTCTCAACGTATTTACGATTAAAAGGATATGAGGTGATATATATTAGGGCAAGCTTAGCGG
AAGATAGTATTACGTTAGCTGTTGAGCAAATAAGACCTAAATATGTAGTAATCTCTTTTGATGACGGACGAGAACTGAAG
AACGCAATGAGCTACTTGAATTTGTTGCAAGAAAAAAGTGAAAACCTTTCTGTTGGGGTTATAGGAGAAATAGGTGCTGG
AGATCAGTTGAACATTCAAACAAGCCTAATTGGTGATACGAAAGAAGAATGGGATGATTGGTTAAAAATGTTAGAATAG

Upstream 100 bases:

>100_bases
ATATAACTCTTTTTGTTAGTAATGGGTATGGAACAACGTTGATTCCACTTCGCTTCCGAGCACCTGCTCAAACACATATT
ATTACGTTATGCGGAGGGAA

Downstream 100 bases:

>100_bases
TTGTTCGAAAAGAACCATCTATTTTCTATTTCATATAATAAAAATTATATTCATTGGTTGCGTAGGGAGGGTATGAGATG
AGGCTGGAACGATTAAATTA

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MMPTLNGKYNIKAVSKIIGVQPSTLRAWERRYQMIAPKRNHAGHRLYTEEHIQILKWLMDKVSSGMMIGQAVQLLEGNRL
QNSVQNEIHYDREVVLVDDLLQALLKFDEITTSALLNEAFSIYATEKVIASIVLQVSNKLLTLKNNNEVTMVQFQYVLSF
LQTRLGMIYHNASSFSSIHKVVVLESNMLKGFVFSTYLRLKGYEVIYIRASLAEDSITLAVEQIRPKYVVISFDDGRELK
NAMSYLNLLQEKSENLSVGVIGEIGAGDQLNIQTSLIGDTKEEWDDWLKMLE

Sequences:

>Translated_292_residues
MMPTLNGKYNIKAVSKIIGVQPSTLRAWERRYQMIAPKRNHAGHRLYTEEHIQILKWLMDKVSSGMMIGQAVQLLEGNRL
QNSVQNEIHYDREVVLVDDLLQALLKFDEITTSALLNEAFSIYATEKVIASIVLQVSNKLLTLKNNNEVTMVQFQYVLSF
LQTRLGMIYHNASSFSSIHKVVVLESNMLKGFVFSTYLRLKGYEVIYIRASLAEDSITLAVEQIRPKYVVISFDDGRELK
NAMSYLNLLQEKSENLSVGVIGEIGAGDQLNIQTSLIGDTKEEWDDWLKMLE
>Mature_292_residues
MMPTLNGKYNIKAVSKIIGVQPSTLRAWERRYQMIAPKRNHAGHRLYTEEHIQILKWLMDKVSSGMMIGQAVQLLEGNRL
QNSVQNEIHYDREVVLVDDLLQALLKFDEITTSALLNEAFSIYATEKVIASIVLQVSNKLLTLKNNNEVTMVQFQYVLSF
LQTRLGMIYHNASSFSSIHKVVVLESNMLKGFVFSTYLRLKGYEVIYIRASLAEDSITLAVEQIRPKYVVISFDDGRELK
NAMSYLNLLQEKSENLSVGVIGEIGAGDQLNIQTSLIGDTKEEWDDWLKMLE

Specific function: Controls the expression of 6 small proteins that may play a role in biofilm maturation. Binds to and represses the operator of the ycgZ-ymgA-ariR-ymgC operon, it also regulates yliL and ynaK. Binding is antagonized by YcgF upon blue-light (470 nm) irradia

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787409, Length=150, Percent_Identity=28.6666666666667, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551 [H]

Pfam domain/function: PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 33296; Mature: 33296

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMPTLNGKYNIKAVSKIIGVQPSTLRAWERRYQMIAPKRNHAGHRLYTEEHIQILKWLMD
CCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
KVSSGMMIGQAVQLLEGNRLQNSVQNEIHYDREVVLVDDLLQALLKFDEITTSALLNEAF
HHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHH
SIYATEKVIASIVLQVSNKLLTLKNNNEVTMVQFQYVLSFLQTRLGMIYHNASSFSSIHK
HHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHE
VVVLESNMLKGFVFSTYLRLKGYEVIYIRASLAEDSITLAVEQIRPKYVVISFDDGRELK
EEEEECCHHHHHHHHHHHHHCCEEEEEEEEECCCCHHEEEHHHCCCCEEEEEECCCHHHH
NAMSYLNLLQEKSENLSVGVIGEIGAGDQLNIQTSLIGDTKEEWDDWLKMLE
HHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHCC
>Mature Secondary Structure
MMPTLNGKYNIKAVSKIIGVQPSTLRAWERRYQMIAPKRNHAGHRLYTEEHIQILKWLMD
CCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
KVSSGMMIGQAVQLLEGNRLQNSVQNEIHYDREVVLVDDLLQALLKFDEITTSALLNEAF
HHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHH
SIYATEKVIASIVLQVSNKLLTLKNNNEVTMVQFQYVLSFLQTRLGMIYHNASSFSSIHK
HHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHE
VVVLESNMLKGFVFSTYLRLKGYEVIYIRASLAEDSITLAVEQIRPKYVVISFDDGRELK
EEEEECCHHHHHHHHHHHHHCCEEEEEEEEECCCCHHEEEHHHCCCCEEEEEECCCHHHH
NAMSYLNLLQEKSENLSVGVIGEIGAGDQLNIQTSLIGDTKEEWDDWLKMLE
HHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]