Click here to switch to the map view.

The map label for this gene is sirB [H]

Identifier: 49184353

GI number: 49184353

Start: 1368311

End: 1369066

Strand: Direct

Name: sirB [H]

Synonym: BAS1336

Alternate gene names: 49184353

Gene position: 1368311-1369066 (Clockwise)

Preceding gene: 49184352

Following gene: 49184354

Centisome position: 26.17

GC content: 35.32

Gene sequence:

>756_bases
ATGAAAGCCATCTTATATATATGTCATGGAAGTCGCTTGAAAGCAGCTAAAGAAGAAGCGGTTGCATTTATTACGTCATG
TATGAACCGTGTAGAGGTAAGTATTCAAGAAATTTGTTTTTTAGAGTTAGCGAGTCCAACTATTGATGAAGGGTTCCGTA
CATGTGTGAAGCGTGGTGCTACAGAGATTATCGTTATTCCAGTTTTTTTATTAGCAGCAGGTCATGTAAAAAAAGATATT
CCGTTTGAATTGGAAAAGTTAAATAATCAATATCCAAGTATTAAAGTGACCTATGGTAATCCATTTGGCGTATCAGAAGC
ACTTATAAAATCAGTGTATAGCGGAAGTGGCATTGAACAGGAAAATAAGAATGAAGTGACGTTACTTCTCGTTGCAAGAG
GGAGCAGTGATCCTGAAGTATTAAGAGATATAAACTGGATTGCTTCTTTATTTCAAAAGGAAGAGAAGATTAAGAAAGTA
GAAGTTTGTTACTTAGCGGCTGCCGAGCCGAAATTTGAGGAGAAGTTAAAGGAAGTTGTAGAACGAAAAGAAAAGAATAT
CGTTGTGCTGCCTTACTTGTTATTTACAGGTTTACTTATGAAACATATTGAAAAAGAAGTGCGCCAATATGAGCTAGATG
AGATAAAAATAAGTCCGTATTTAGGAAAGAATGAAGCGTTTCAGTATATGTTAATTCAGAAAACGAAGAAATTATTGAAG
GGAGATCAATATGTATCCACTTACAGTGCGAGTTGA

Upstream 100 bases:

>100_bases
AGCATGATTGTAATTGGAGAAGTCGTCCGTTTTAGAGAAAAAATCCATTGGTTTGAAAAGCAGACAGAAAGTACGTATCA
AGTAAGTGGAGTGTTATAAA

Downstream 100 bases:

>100_bases
GAAGAAACGTGTTGTTGTCATTGGTGGAGGGAAAGTTGCGGGATTTAAAATTATTCCTTTGCTAAAACAAGGTGCAGATA
TAGTTGTGGTAAGTCCTGAA

Product: CbiX domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MKAILYICHGSRLKAAKEEAVAFITSCMNRVEVSIQEICFLELASPTIDEGFRTCVKRGATEIIVIPVFLLAAGHVKKDI
PFELEKLNNQYPSIKVTYGNPFGVSEALIKSVYSGSGIEQENKNEVTLLLVARGSSDPEVLRDINWIASLFQKEEKIKKV
EVCYLAAAEPKFEEKLKEVVERKEKNIVVLPYLLFTGLLMKHIEKEVRQYELDEIKISPYLGKNEAFQYMLIQKTKKLLK
GDQYVSTYSAS

Sequences:

>Translated_251_residues
MKAILYICHGSRLKAAKEEAVAFITSCMNRVEVSIQEICFLELASPTIDEGFRTCVKRGATEIIVIPVFLLAAGHVKKDI
PFELEKLNNQYPSIKVTYGNPFGVSEALIKSVYSGSGIEQENKNEVTLLLVARGSSDPEVLRDINWIASLFQKEEKIKKV
EVCYLAAAEPKFEEKLKEVVERKEKNIVVLPYLLFTGLLMKHIEKEVRQYELDEIKISPYLGKNEAFQYMLIQKTKKLLK
GDQYVSTYSAS
>Mature_251_residues
MKAILYICHGSRLKAAKEEAVAFITSCMNRVEVSIQEICFLELASPTIDEGFRTCVKRGATEIIVIPVFLLAAGHVKKDI
PFELEKLNNQYPSIKVTYGNPFGVSEALIKSVYSGSGIEQENKNEVTLLLVARGSSDPEVLRDINWIASLFQKEEKIKKV
EVCYLAAAEPKFEEKLKEVVERKEKNIVVLPYLLFTGLLMKHIEKEVRQYELDEIKISPYLGKNEAFQYMLIQKTKKLLK
GDQYVSTYSAS

Specific function: Chelates iron to the siroheme precursor [H]

COG id: COG2138

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiX family. SirB subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002762 [H]

Pfam domain/function: PF01903 CbiX [H]

EC number: =4.99.1.4 [H]

Molecular weight: Translated: 28462; Mature: 28462

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAILYICHGSRLKAAKEEAVAFITSCMNRVEVSIQEICFLELASPTIDEGFRTCVKRGA
CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
TEIIVIPVFLLAAGHVKKDIPFELEKLNNQYPSIKVTYGNPFGVSEALIKSVYSGSGIEQ
CEEEHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCC
ENKNEVTLLLVARGSSDPEVLRDINWIASLFQKEEKIKKVEVCYLAAAEPKFEEKLKEVV
CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHH
ERKEKNIVVLPYLLFTGLLMKHIEKEVRQYELDEIKISPYLGKNEAFQYMLIQKTKKLLK
HHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHC
GDQYVSTYSAS
CCCHHHCCCCC
>Mature Secondary Structure
MKAILYICHGSRLKAAKEEAVAFITSCMNRVEVSIQEICFLELASPTIDEGFRTCVKRGA
CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
TEIIVIPVFLLAAGHVKKDIPFELEKLNNQYPSIKVTYGNPFGVSEALIKSVYSGSGIEQ
CEEEHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCC
ENKNEVTLLLVARGSSDPEVLRDINWIASLFQKEEKIKKVEVCYLAAAEPKFEEKLKEVV
CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHH
ERKEKNIVVLPYLLFTGLLMKHIEKEVRQYELDEIKISPYLGKNEAFQYMLIQKTKKLLK
HHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHC
GDQYVSTYSAS
CCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA