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The map label for this gene is srlR [C]

Identifier: 49184259

GI number: 49184259

Start: 1285920

End: 1286702

Strand: Direct

Name: srlR [C]

Synonym: BAS1242

Alternate gene names: 49184259

Gene position: 1285920-1286702 (Clockwise)

Preceding gene: 49184258

Following gene: 49184260

Centisome position: 24.59

GC content: 37.04

Gene sequence:

>783_bases
ATGTCTGTAGTAGGTGAAGAAAGAAAGCGAACCATTCTTGAGAAGGTAGAGTTTAAAGGGAAAGTAAAAGTTTCAGAATT
AGCGAGAGAGTTTGCTGTATCAACGGAGACGATTCGCCGTTATTTAGAAGAATTGGATCGTGAAAAGAAGTTGAAGAAAG
TGTATGGTGGAGCCGTCCAACTTCCGGGAGCTGGGATAGAGGCACCAATGTTAGAGCGAGAGATGCTGCATATAGAAGAG
AAGAAGAGAATTGGGTATAAAGCAGCAACGTTTGTGGAAGATGGAGATGTGATTGCAATTGATGACGGAAGTACACCACT
TCAAATGGTACCCTATCTTGTTCATCGTAAAAATTTAACGATTGTAACAAGTTCATTTCCAGTAGCGACACAATTAATTT
CTTCTATTAATAAAAAGATGTTTCACGGTGAAGTTTTATTTATTGGTGGGAAAGTATCTCCAAAGCATTCACGCGTATCA
GGATCTATTTCGCAGCAAGTCATCCAGCAATTCCATTTTCATAAAGCATTTGTTTCGATTGATGGATTATTACCTAGTTT
TGGAGTTTCTAGTTTTGAATTGGAAAAGGCGAAACTGTCAGAAGCGATGATGAAATTAGCGGAAAAAACATATATTCTAT
GTGATCATACAAAGGTAGGCGTAAAAGGGAATTATCGAATAGCAGCATTCTCCCGTATTCAGCATGTTATTTGTGATAAA
AAAATGCCCTATAGTTTTGAAGAGGAAGTTAAAAAGCATAATATTCAATGGACAATTTGTTAA

Upstream 100 bases:

>100_bases
CGTGGTATTCATATTCATGAAGAAATTTCTACTTACAAAGAAAGTTATAACTTTGTATAAGTAAGGCAATGTATGAGGTA
GAAATCAATGGGGTGAGGTT

Downstream 100 bases:

>100_bases
ATACATTGAATTTCCACCTGATTTTAAGGTGGGAGTTTTACTGCTTACAAATAGAGGGATAAAAGATTTGTATGTATGCA
AAAAAAGTGGACACATTTTC

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MSVVGEERKRTILEKVEFKGKVKVSELAREFAVSTETIRRYLEELDREKKLKKVYGGAVQLPGAGIEAPMLEREMLHIEE
KKRIGYKAATFVEDGDVIAIDDGSTPLQMVPYLVHRKNLTIVTSSFPVATQLISSINKKMFHGEVLFIGGKVSPKHSRVS
GSISQQVIQQFHFHKAFVSIDGLLPSFGVSSFELEKAKLSEAMMKLAEKTYILCDHTKVGVKGNYRIAAFSRIQHVICDK
KMPYSFEEEVKKHNIQWTIC

Sequences:

>Translated_260_residues
MSVVGEERKRTILEKVEFKGKVKVSELAREFAVSTETIRRYLEELDREKKLKKVYGGAVQLPGAGIEAPMLEREMLHIEE
KKRIGYKAATFVEDGDVIAIDDGSTPLQMVPYLVHRKNLTIVTSSFPVATQLISSINKKMFHGEVLFIGGKVSPKHSRVS
GSISQQVIQQFHFHKAFVSIDGLLPSFGVSSFELEKAKLSEAMMKLAEKTYILCDHTKVGVKGNYRIAAFSRIQHVICDK
KMPYSFEEEVKKHNIQWTIC
>Mature_259_residues
SVVGEERKRTILEKVEFKGKVKVSELAREFAVSTETIRRYLEELDREKKLKKVYGGAVQLPGAGIEAPMLEREMLHIEEK
KRIGYKAATFVEDGDVIAIDDGSTPLQMVPYLVHRKNLTIVTSSFPVATQLISSINKKMFHGEVLFIGGKVSPKHSRVSG
SISQQVIQQFHFHKAFVSIDGLLPSFGVSSFELEKAKLSEAMMKLAEKTYILCDHTKVGVKGNYRIAAFSRIQHVICDKK
MPYSFEEEVKKHNIQWTIC

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789059, Length=253, Percent_Identity=29.2490118577075, Blast_Score=117, Evalue=5e-28,
Organism=Escherichia coli, GI1789829, Length=254, Percent_Identity=28.3464566929134, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1787540, Length=239, Percent_Identity=32.2175732217573, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI226510968, Length=250, Percent_Identity=29.2, Blast_Score=110, Evalue=6e-26,
Organism=Escherichia coli, GI1788069, Length=265, Percent_Identity=29.811320754717, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1789519, Length=253, Percent_Identity=24.1106719367589, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI87082344, Length=257, Percent_Identity=23.3463035019455, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1790753, Length=176, Percent_Identity=23.2954545454545, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790635, Length=244, Percent_Identity=27.0491803278689, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787063, Length=240, Percent_Identity=25.4166666666667, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 29405; Mature: 29273

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVVGEERKRTILEKVEFKGKVKVSELAREFAVSTETIRRYLEELDREKKLKKVYGGAVQ
CCCCCHHHHHHHHHHHHCCCCEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEE
LPGAGIEAPMLEREMLHIEEKKRIGYKAATFVEDGDVIAIDDGSTPLQMVPYLVHRKNLT
CCCCCCCCHHHHHHHHHHHHHHHCCCHHEEEEECCCEEEECCCCCHHHHHHHHHHCCCEE
IVTSSFPVATQLISSINKKMFHGEVLFIGGKVSPKHSRVSGSISQQVIQQFHFHKAFVSI
EEECCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHH
DGLLPSFGVSSFELEKAKLSEAMMKLAEKTYILCDHTKVGVKGNYRIAAFSRIQHVICDK
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCEEECCCCCEEEHHHHHHHHHHHCC
KMPYSFEEEVKKHNIQWTIC
CCCCCHHHHHHHCCCEEEEC
>Mature Secondary Structure 
SVVGEERKRTILEKVEFKGKVKVSELAREFAVSTETIRRYLEELDREKKLKKVYGGAVQ
CCCCHHHHHHHHHHHHCCCCEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEE
LPGAGIEAPMLEREMLHIEEKKRIGYKAATFVEDGDVIAIDDGSTPLQMVPYLVHRKNLT
CCCCCCCCHHHHHHHHHHHHHHHCCCHHEEEEECCCEEEECCCCCHHHHHHHHHHCCCEE
IVTSSFPVATQLISSINKKMFHGEVLFIGGKVSPKHSRVSGSISQQVIQQFHFHKAFVSI
EEECCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHH
DGLLPSFGVSSFELEKAKLSEAMMKLAEKTYILCDHTKVGVKGNYRIAAFSRIQHVICDK
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCEEECCCCCEEEHHHHHHHHHHHCC
KMPYSFEEEVKKHNIQWTIC
CCCCCHHHHHHHCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12950922 [H]