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The map label for this gene is yobO [H]

Identifier: 49184142

GI number: 49184142

Start: 1175962

End: 1176579

Strand: Reverse

Name: yobO [H]

Synonym: BAS1122

Alternate gene names: 49184142

Gene position: 1176579-1175962 (Counterclockwise)

Preceding gene: 49184143

Following gene: 49184137

Centisome position: 22.5

GC content: 39.48

Gene sequence:

>618_bases
ATGGGGCGCTTCGGTACAGCAGAAGAATCTTATTCTTGGTTTATTGCAAACGGCACAAATGAAACCGATCATAATATCGG
TGCAAAGTGGCTTGCTCATAATGGAGAAATGTACATTGATGGCGCTTCTTATAATGCAAGCGGAACTGATTTTGCACAAA
TGTTTGAAGCAGTAGACAATACTCTTATTGATGTAGGTTATTTCGTTACATTTAGTAGCGAAGAAAAGATTCGAATCGCT
ACTTCAAACGATTCATTCATCTTAGGAATATCTAGTGCTACCCCGGCCCTTATAGGAAATAGCGGTGCTCTAAGTTGGCA
AAAACGCTACAAAACAGATAGCTTCGGAAAACGTCAATATGTACGTACGGAATCGCAAGACATACAACCACTTTTAAATA
CAGAATGGGATCCAGCTTGCAAATATATAGCAAGGAAAGATCGTACCGAGTGGCTTCCTGTCGGATTAATTGGACAAATG
TTAGTACGTGATGACGGCACTTGCGAAACACATGGATATTGTCGTCCAAATGACAATGGCATTGCTACAAAATCCGAAAG
TGGTTTTTTCGTTATAAAGCGCACGGGTGATAATCAAATTTTAATATTATTCCGCTAA

Upstream 100 bases:

>100_bases
AGCAGCACATGCAGAAGGAACCGCGACTATCGCTAACGGATTCTCTTCTCATGCGGAAGGTAATCATACATCAACAGCTC
ACTTTGCAGGTAGCCATATT

Downstream 100 bases:

>100_bases
GAAAAAAGGGAACAAAATTCTTCATTACATAAGAATTTTGTTCCCTTTTTAAGTCTGTCTTAATACCTCTTGCATATCAC
TTGGAATCATTGCAGCGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MGRFGTAEESYSWFIANGTNETDHNIGAKWLAHNGEMYIDGASYNASGTDFAQMFEAVDNTLIDVGYFVTFSSEEKIRIA
TSNDSFILGISSATPALIGNSGALSWQKRYKTDSFGKRQYVRTESQDIQPLLNTEWDPACKYIARKDRTEWLPVGLIGQM
LVRDDGTCETHGYCRPNDNGIATKSESGFFVIKRTGDNQILILFR

Sequences:

>Translated_205_residues
MGRFGTAEESYSWFIANGTNETDHNIGAKWLAHNGEMYIDGASYNASGTDFAQMFEAVDNTLIDVGYFVTFSSEEKIRIA
TSNDSFILGISSATPALIGNSGALSWQKRYKTDSFGKRQYVRTESQDIQPLLNTEWDPACKYIARKDRTEWLPVGLIGQM
LVRDDGTCETHGYCRPNDNGIATKSESGFFVIKRTGDNQILILFR
>Mature_204_residues
GRFGTAEESYSWFIANGTNETDHNIGAKWLAHNGEMYIDGASYNASGTDFAQMFEAVDNTLIDVGYFVTFSSEEKIRIAT
SNDSFILGISSATPALIGNSGALSWQKRYKTDSFGKRQYVRTESQDIQPLLNTEWDPACKYIARKDRTEWLPVGLIGQML
VRDDGTCETHGYCRPNDNGIATKSESGFFVIKRTGDNQILILFR

Specific function: Unknown

COG id: COG5295

COG function: function code UW; Autotransporter adhesin

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 6 PbH1 repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021865
- InterPro:   IPR006626
- InterPro:   IPR012334
- InterPro:   IPR011050 [H]

Pfam domain/function: PF11962 DUF3476 [H]

EC number: NA

Molecular weight: Translated: 22927; Mature: 22796

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRFGTAEESYSWFIANGTNETDHNIGAKWLAHNGEMYIDGASYNASGTDFAQMFEAVDN
CCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCEEEEECCCCCCCCCHHHHHHHHHCC
TLIDVGYFVTFSSEEKIRIATSNDSFILGISSATPALIGNSGALSWQKRYKTDSFGKRQY
CEEEEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEECCCCCCCHHHHCCCCCCCCEEE
VRTESQDIQPLLNTEWDPACKYIARKDRTEWLPVGLIGQMLVRDDGTCETHGYCRPNDNG
EECCCCCCCHHHCCCCCHHHHHHHHCCCCCEEEHHHHHHHEECCCCCCCCCCEECCCCCC
IATKSESGFFVIKRTGDNQILILFR
CEEECCCCEEEEEECCCCEEEEEEC
>Mature Secondary Structure 
GRFGTAEESYSWFIANGTNETDHNIGAKWLAHNGEMYIDGASYNASGTDFAQMFEAVDN
CCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCEEEEECCCCCCCCCHHHHHHHHHCC
TLIDVGYFVTFSSEEKIRIATSNDSFILGISSATPALIGNSGALSWQKRYKTDSFGKRQY
CEEEEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEECCCCCCCHHHHCCCCCCCCEEE
VRTESQDIQPLLNTEWDPACKYIARKDRTEWLPVGLIGQMLVRDDGTCETHGYCRPNDNG
EECCCCCCCHHHCCCCCHHHHHHHHCCCCCEEEHHHHHHHEECCCCCCCCCCEECCCCCC
IATKSESGFFVIKRTGDNQILILFR
CEEECCCCEEEEEECCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]