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The map label for this gene is dppE [H]

Identifier: 49184127

GI number: 49184127

Start: 1161085

End: 1162689

Strand: Direct

Name: dppE [H]

Synonym: BAS1107

Alternate gene names: 49184127

Gene position: 1161085-1162689 (Clockwise)

Preceding gene: 49184125

Following gene: 49184129

Centisome position: 22.21

GC content: 34.52

Gene sequence:

>1605_bases
ATGAGCATGATGTTAGGGGCATGTAGCTACCAAAAAGATGAGCCGCAAGCGAACGCAAAAGGGGATAGCGGGAAAAGCGG
TGCGAAGCAAGTTATTAATCTAACGGAAGTGTCTGAAATTCCGACAATGGATACGACACTTGCCTCGGATGCTGCTTCTT
CAAAAGTTATGAATAATACAATGGAAGGGCTATATCGACTTGGGAAAGGCGATAAGTTAGTTCCAGGTGTAGCGAAATCT
CATACGAAATCTGAAGATGGTAAAAAATATACATTTAAATTGCGTGAAGACGCTAAATGGTCGAATGGTGATCCTGTAAC
AGCAAAAGATTTTGTATATGCATGGCAAAGAGCTGTTAACCCTGATACGGCAGCGAAATCAGGATATATTATGCTTGATG
TGAAAAATGCAGAGAAAATTAATAAAAGGGAGCTATCACCGGATCAATTAGGTGTAAAAGCGATAGATGATTATACATTT
GAAGTTGAATTGGATAATCCAGTTCCATATTTTCTTGATTTAACGGTGTACCCACTATTTTTCCCATTAAATGAGAAGTA
TATGAAAGAACAGGGAGAAAAATTTGGTTTAGAAGCAAATACAACTTTGTATAACGGTCCATTTGTATTAAATGAATGGA
AACATGAACAAAGTTTCCAATTAAAGAAAAATCCAAGCTATTGGGATCAAAAAGAAGTAAAATTAGAAGAAGTTAATTTT
AATGTTGTAAAAGATACAGGAGCAGCTGTTAATTTGTATAATACGAGTGCGATTGACAGAGTCGGTTTATCAGCTGAGTT
AGTTGATAAGTATAAAGGACAACAAGACTTTAAAACAATTAATGATCCAACTGTATTCTTCTTACGTTTTAATCAAAAAA
ATCCAGCTTTAGCTAACAAAAATATTCGTAAGGCTATTTCTAGTGCATACGATCGAGATGGTATTGGTGAGGTTATTTTA
AACAACGGTTCTAAGGGAGCTTACGGTTTAGTACCATCTGATTTTGTTAAGGGACCAGATAAGCAAGATTTCAGAAAAGA
AAATGGGAAACTTTCAAAAGTCGATGTGAAGGAAGCTAAAAAATTCTGGGAAGCTGGAAAGAAAGAATTAGGTAAAGATA
AAATAGAAATAGAATTTTTAAACTTTGATAATGAAGAATCTAAGAAAATTGGTGAGTATGTAAAGGGAGAATTAGAAAAG
AATTTACCAGGTCTAACAGTAACAATTAAGATGCAACCATTTGCACAAAAATTAAAACTTGAAGATAGTGGACAGTTTGA
TATTTCATTTACTGGATGGGGACCTGATTTCCCTGATGCAATCACATTCCTTGATATGTTTATAACAGATGGTTCACAAA
ATAAAATGGGTTATTCTAATGCTGAGTATGATAGCCTTATTAAAAAGGCAAAGCAAGAAGGTTCAGATGTAAAAGGACGT
TGGAATGACCTGTTAAAAGCGGAAAAAATCTTATTTGAGGATGCAGCAATTGCACCAGTATTCCAACGTGGTAGATCTAT
ATTAGAAAGAGAAACAATTAAAGATGTATATATCCACAAATATGGCGGCGAATTAAGCTTTAAGTGGGCATCTGTAGAAA
AATAA

Upstream 100 bases:

>100_bases
ATATATATTTCTTTTTGTTTGAAAATGAAAGGGCTAACATTTTTGTGGAGGGTGGAAGTATGAAAAAAAGATTCCAGTTT
TTGTAGTATCAACAGTAGCA

Downstream 100 bases:

>100_bases
AAAAGCAGGCTAACCGCCTGCTTTTTTTAATACGTACGTTTCTTATAAATACCTTTCCCGCCGACCTCGTTCCAGCCGGA
TTGCACATCCAAACTTTTAT

Product: oligopeptide ABC transporter oligopeptide-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 534; Mature: 533

Protein sequence:

>534_residues
MSMMLGACSYQKDEPQANAKGDSGKSGAKQVINLTEVSEIPTMDTTLASDAASSKVMNNTMEGLYRLGKGDKLVPGVAKS
HTKSEDGKKYTFKLREDAKWSNGDPVTAKDFVYAWQRAVNPDTAAKSGYIMLDVKNAEKINKRELSPDQLGVKAIDDYTF
EVELDNPVPYFLDLTVYPLFFPLNEKYMKEQGEKFGLEANTTLYNGPFVLNEWKHEQSFQLKKNPSYWDQKEVKLEEVNF
NVVKDTGAAVNLYNTSAIDRVGLSAELVDKYKGQQDFKTINDPTVFFLRFNQKNPALANKNIRKAISSAYDRDGIGEVIL
NNGSKGAYGLVPSDFVKGPDKQDFRKENGKLSKVDVKEAKKFWEAGKKELGKDKIEIEFLNFDNEESKKIGEYVKGELEK
NLPGLTVTIKMQPFAQKLKLEDSGQFDISFTGWGPDFPDAITFLDMFITDGSQNKMGYSNAEYDSLIKKAKQEGSDVKGR
WNDLLKAEKILFEDAAIAPVFQRGRSILERETIKDVYIHKYGGELSFKWASVEK

Sequences:

>Translated_534_residues
MSMMLGACSYQKDEPQANAKGDSGKSGAKQVINLTEVSEIPTMDTTLASDAASSKVMNNTMEGLYRLGKGDKLVPGVAKS
HTKSEDGKKYTFKLREDAKWSNGDPVTAKDFVYAWQRAVNPDTAAKSGYIMLDVKNAEKINKRELSPDQLGVKAIDDYTF
EVELDNPVPYFLDLTVYPLFFPLNEKYMKEQGEKFGLEANTTLYNGPFVLNEWKHEQSFQLKKNPSYWDQKEVKLEEVNF
NVVKDTGAAVNLYNTSAIDRVGLSAELVDKYKGQQDFKTINDPTVFFLRFNQKNPALANKNIRKAISSAYDRDGIGEVIL
NNGSKGAYGLVPSDFVKGPDKQDFRKENGKLSKVDVKEAKKFWEAGKKELGKDKIEIEFLNFDNEESKKIGEYVKGELEK
NLPGLTVTIKMQPFAQKLKLEDSGQFDISFTGWGPDFPDAITFLDMFITDGSQNKMGYSNAEYDSLIKKAKQEGSDVKGR
WNDLLKAEKILFEDAAIAPVFQRGRSILERETIKDVYIHKYGGELSFKWASVEK
>Mature_533_residues
SMMLGACSYQKDEPQANAKGDSGKSGAKQVINLTEVSEIPTMDTTLASDAASSKVMNNTMEGLYRLGKGDKLVPGVAKSH
TKSEDGKKYTFKLREDAKWSNGDPVTAKDFVYAWQRAVNPDTAAKSGYIMLDVKNAEKINKRELSPDQLGVKAIDDYTFE
VELDNPVPYFLDLTVYPLFFPLNEKYMKEQGEKFGLEANTTLYNGPFVLNEWKHEQSFQLKKNPSYWDQKEVKLEEVNFN
VVKDTGAAVNLYNTSAIDRVGLSAELVDKYKGQQDFKTINDPTVFFLRFNQKNPALANKNIRKAISSAYDRDGIGEVILN
NGSKGAYGLVPSDFVKGPDKQDFRKENGKLSKVDVKEAKKFWEAGKKELGKDKIEIEFLNFDNEESKKIGEYVKGELEKN
LPGLTVTIKMQPFAQKLKLEDSGQFDISFTGWGPDFPDAITFLDMFITDGSQNKMGYSNAEYDSLIKKAKQEGSDVKGRW
NDLLKAEKILFEDAAIAPVFQRGRSILERETIKDVYIHKYGGELSFKWASVEK

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the binding of dipeptides with high affinity. Is expressed to facilitate adaptation to nutrient deficiency conditions, which also induce sporulation [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI87081878, Length=480, Percent_Identity=30.8333333333333, Blast_Score=207, Evalue=1e-54,
Organism=Escherichia coli, GI1787495, Length=509, Percent_Identity=29.4695481335953, Blast_Score=198, Evalue=8e-52,
Organism=Escherichia coli, GI1789397, Length=505, Percent_Identity=27.3267326732673, Blast_Score=187, Evalue=1e-48,
Organism=Escherichia coli, GI1787762, Length=458, Percent_Identity=24.4541484716157, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI1787052, Length=322, Percent_Identity=24.8447204968944, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1789966, Length=506, Percent_Identity=23.7154150197628, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1789887, Length=358, Percent_Identity=23.7430167597765, Blast_Score=70, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 60113; Mature: 59982

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMMLGACSYQKDEPQANAKGDSGKSGAKQVINLTEVSEIPTMDTTLASDAASSKVMNNT
CCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
MEGLYRLGKGDKLVPGVAKSHTKSEDGKKYTFKLREDAKWSNGDPVTAKDFVYAWQRAVN
HHHHHHHCCCCEECCCCHHCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCC
PDTAAKSGYIMLDVKNAEKINKRELSPDQLGVKAIDDYTFEVELDNPVPYFLDLTVYPLF
CCCCCCCCEEEEEECCCHHHHHHCCCHHHCCCEEECCEEEEEEECCCCCEEEEEEEEEEE
FPLNEKYMKEQGEKFGLEANTTLYNGPFVLNEWKHEQSFQLKKNPSYWDQKEVKLEEVNF
ECCCHHHHHHCCHHCCCCCCCEEECCCEEEECCCCCCCEEECCCCCCCCCCCCEEEECCE
NVVKDTGAAVNLYNTSAIDRVGLSAELVDKYKGQQDFKTINDPTVFFLRFNQKNPALANK
EEEECCCCEEEEECCCHHHHCCCCHHHHHHHCCCHHHCCCCCCEEEEEEECCCCCCCCCH
NIRKAISSAYDRDGIGEVILNNGSKGAYGLVPSDFVKGPDKQDFRKENGKLSKVDVKEAK
HHHHHHHHHCCCCCCCEEEEECCCCCEECCCCHHHHCCCCHHHHHHHCCCEEEECHHHHH
KFWEAGKKELGKDKIEIEFLNFDNEESKKIGEYVKGELEKNLPGLTVTIKMQPFAQKLKL
HHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHCC
EDSGQFDISFTGWGPDFPDAITFLDMFITDGSQNKMGYSNAEYDSLIKKAKQEGSDVKGR
CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCH
WNDLLKAEKILFEDAAIAPVFQRGRSILERETIKDVYIHKYGGELSFKWASVEK
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEECCCCC
>Mature Secondary Structure 
SMMLGACSYQKDEPQANAKGDSGKSGAKQVINLTEVSEIPTMDTTLASDAASSKVMNNT
CCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
MEGLYRLGKGDKLVPGVAKSHTKSEDGKKYTFKLREDAKWSNGDPVTAKDFVYAWQRAVN
HHHHHHHCCCCEECCCCHHCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCC
PDTAAKSGYIMLDVKNAEKINKRELSPDQLGVKAIDDYTFEVELDNPVPYFLDLTVYPLF
CCCCCCCCEEEEEECCCHHHHHHCCCHHHCCCEEECCEEEEEEECCCCCEEEEEEEEEEE
FPLNEKYMKEQGEKFGLEANTTLYNGPFVLNEWKHEQSFQLKKNPSYWDQKEVKLEEVNF
ECCCHHHHHHCCHHCCCCCCCEEECCCEEEECCCCCCCEEECCCCCCCCCCCCEEEECCE
NVVKDTGAAVNLYNTSAIDRVGLSAELVDKYKGQQDFKTINDPTVFFLRFNQKNPALANK
EEEECCCCEEEEECCCHHHHCCCCHHHHHHHCCCHHHCCCCCCEEEEEEECCCCCCCCCH
NIRKAISSAYDRDGIGEVILNNGSKGAYGLVPSDFVKGPDKQDFRKENGKLSKVDVKEAK
HHHHHHHHHCCCCCCCEEEEECCCCCEECCCCHHHHCCCCHHHHHHHCCCEEEECHHHHH
KFWEAGKKELGKDKIEIEFLNFDNEESKKIGEYVKGELEKNLPGLTVTIKMQPFAQKLKL
HHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHCC
EDSGQFDISFTGWGPDFPDAITFLDMFITDGSQNKMGYSNAEYDSLIKKAKQEGSDVKGR
CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCH
WNDLLKAEKILFEDAAIAPVFQRGRSILERETIKDVYIHKYGGELSFKWASVEK
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377 [H]