Click here to switch to the map view.

The map label for this gene is 49184100

Identifier: 49184100

GI number: 49184100

Start: 1133789

End: 1134673

Strand: Direct

Name: 49184100

Synonym: BAS1080

Alternate gene names: NA

Gene position: 1133789-1134673 (Clockwise)

Preceding gene: 49184099

Following gene: 49184102

Centisome position: 21.68

GC content: 23.28

Gene sequence:

>885_bases
ATGGAATTTTACGATTTGGGTATTACCATTAAAGAACTTAGAATTAAAAAAAATATATCACAATCCGAATTATGTCATGG
AATATGTTCACAAAGTCAAATTAGCAAGATTGAAAAAGGTGTGATTTATCCATCTAGCATATTGTTATATCAATTATCAG
AAAGGCTTGGTATTGATCCAAATAATATATTTGCACTAACTCAAAACAAAAAATTTAAATATACAGAAAATGTAAAATGC
ATAATGAAAGACTGTATAAGACAACATCAATATAAAGAGCTTTATGAAATAGTAACAAAAGAAAAAAACTTAAATAATTT
TCGAATGAAAGAAGATAAACAATTTCTAATATGGCATGAAGCAATTGCTATATATCGTGTGAATAACTTAATAAAAACAG
CTTTAACTCTTTTGAATAATGCATTAAAAATAACTGTAACGAATATTGATTTTTTAACAGAGAGAGAAATAGATATTATG
CAGACAATGGCTATATTTCATGCAGAAAATAAAGAATATAAAGAGAGTATTAATATATTAAAAAGATGTTTAAATAATTT
TGATAAGTTAGATTTTCCTAGAGATAAAGAAATTAAATTAAAAATTATTTATAATTTAGCAAAATGTTTAAATTACACAT
ATCAATACGAAGAAGCAAAAAAATACATTGATAAGGGTATCAAATTAGCTATTAATCTAAATACTTTATACTTATTGGGT
GAACTATACTATGAAAAAGGTTCGAATTTATTAAAGCTTGAACAATCTAATAAAGAAGAAGTTGCTGATAACATGAAAAC
AGCGTTATTTATATTTGAATTAACAAAAAACGAAAAAAAATTACAAATAATTAAAGAAGGGTATTTCGAAAAACATAATT
GCTAA

Upstream 100 bases:

>100_bases
ATATAGAAGAAACAATAATTGCAACTATACTAATTTTACATTACATTAAAAGATGAAAAATAATTTTATACTCATTAAGG
GTTATATTTGAGGAGAGAAA

Downstream 100 bases:

>100_bases
ATAACTACTTATAGTACAATAAAACCTACAGGAAAAGTTCCTGTAGGTTTTACACTTATAAACCTCTTAATATTTTTTAT
AAACTTGATTCTAAAATATT

Product: DNA-binding protein

Products: NA

Alternate protein names: Transcriptional Regulator XRE Family; XRE Family Transcriptional Regulator; Transcriptional Regulator PlcR; Helix-Turn-Helix Domain-Containing Protein; Xre Family Transcriptional Regulator; Transcriptional Activator; Site-Specific Tyrosine Recombinase XerS; Helix-Turn-Helix Domain Protein; Transcriptional Regulator XRE

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MEFYDLGITIKELRIKKNISQSELCHGICSQSQISKIEKGVIYPSSILLYQLSERLGIDPNNIFALTQNKKFKYTENVKC
IMKDCIRQHQYKELYEIVTKEKNLNNFRMKEDKQFLIWHEAIAIYRVNNLIKTALTLLNNALKITVTNIDFLTEREIDIM
QTMAIFHAENKEYKESINILKRCLNNFDKLDFPRDKEIKLKIIYNLAKCLNYTYQYEEAKKYIDKGIKLAINLNTLYLLG
ELYYEKGSNLLKLEQSNKEEVADNMKTALFIFELTKNEKKLQIIKEGYFEKHNC

Sequences:

>Translated_294_residues
MEFYDLGITIKELRIKKNISQSELCHGICSQSQISKIEKGVIYPSSILLYQLSERLGIDPNNIFALTQNKKFKYTENVKC
IMKDCIRQHQYKELYEIVTKEKNLNNFRMKEDKQFLIWHEAIAIYRVNNLIKTALTLLNNALKITVTNIDFLTEREIDIM
QTMAIFHAENKEYKESINILKRCLNNFDKLDFPRDKEIKLKIIYNLAKCLNYTYQYEEAKKYIDKGIKLAINLNTLYLLG
ELYYEKGSNLLKLEQSNKEEVADNMKTALFIFELTKNEKKLQIIKEGYFEKHNC
>Mature_294_residues
MEFYDLGITIKELRIKKNISQSELCHGICSQSQISKIEKGVIYPSSILLYQLSERLGIDPNNIFALTQNKKFKYTENVKC
IMKDCIRQHQYKELYEIVTKEKNLNNFRMKEDKQFLIWHEAIAIYRVNNLIKTALTLLNNALKITVTNIDFLTEREIDIM
QTMAIFHAENKEYKESINILKRCLNNFDKLDFPRDKEIKLKIIYNLAKCLNYTYQYEEAKKYIDKGIKLAINLNTLYLLG
ELYYEKGSNLLKLEQSNKEEVADNMKTALFIFELTKNEKKLQIIKEGYFEKHNC

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34822; Mature: 34822

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFYDLGITIKELRIKKNISQSELCHGICSQSQISKIEKGVIYPSSILLYQLSERLGIDP
CCEEECCCCHHHHHHHCCCCHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
NNIFALTQNKKFKYTENVKCIMKDCIRQHQYKELYEIVTKEKNLNNFRMKEDKQFLIWHE
CCEEEEECCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEHHH
AIAIYRVNNLIKTALTLLNNALKITVTNIDFLTEREIDIMQTMAIFHAENKEYKESINIL
HHHHHHHHHHHHHHHHHHCCCEEEEEEECEECCCCHHHHHHHHHHHHCCCHHHHHHHHHH
KRCLNNFDKLDFPRDKEIKLKIIYNLAKCLNYTYQYEEAKKYIDKGIKLAINLNTLYLLG
HHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHH
ELYYEKGSNLLKLEQSNKEEVADNMKTALFIFELTKNEKKLQIIKEGYFEKHNC
HHHHHCCCCEEEECCCCHHHHHHHHHHEEEEEEECCCCHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MEFYDLGITIKELRIKKNISQSELCHGICSQSQISKIEKGVIYPSSILLYQLSERLGIDP
CCEEECCCCHHHHHHHCCCCHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
NNIFALTQNKKFKYTENVKCIMKDCIRQHQYKELYEIVTKEKNLNNFRMKEDKQFLIWHE
CCEEEEECCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEHHH
AIAIYRVNNLIKTALTLLNNALKITVTNIDFLTEREIDIMQTMAIFHAENKEYKESINIL
HHHHHHHHHHHHHHHHHHCCCEEEEEEECEECCCCHHHHHHHHHHHHCCCHHHHHHHHHH
KRCLNNFDKLDFPRDKEIKLKIIYNLAKCLNYTYQYEEAKKYIDKGIKLAINLNTLYLLG
HHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHH
ELYYEKGSNLLKLEQSNKEEVADNMKTALFIFELTKNEKKLQIIKEGYFEKHNC
HHHHHCCCCEEEECCCCHHHHHHHHHHEEEEEEECCCCHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA