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The map label for this gene is ykkD [H]

Identifier: 49183817

GI number: 49183817

Start: 841853

End: 842167

Strand: Direct

Name: ykkD [H]

Synonym: BAS0793

Alternate gene names: 49183817

Gene position: 841853-842167 (Clockwise)

Preceding gene: 49183816

Following gene: 49183818

Centisome position: 16.1

GC content: 39.37

Gene sequence:

>315_bases
ATGGGTTGGTTTTTCGTATTTTGTGCTGCAATTAGTGAAATAGTCGGTGTGATTGGCCTTAAAATGTATAGTAAAGATAA
AACGTTAGCAAATGGGGCACTTTATATAGGTGGCTTTGCTACATCCTTCGCATTCTTGTATACATCTTTCTTATTCTTAC
AAGTAAGTGTCGCGTATGCGGTTTGGATTGGTATTGGAACAGCGGGAGCCGTTTTATTAAACATGTTCCTGTTTGGTGAG
TCGAAAAGTAAAGCGCGTATCATTAGTGTGGCTCTTATTGTATGCGGAGTGACAGGATTAAAGGCTCTTTCGTAA

Upstream 100 bases:

>100_bases
GTGTAGGGAAATTATTCTTTATCGTGATGGTTGTAGCTGGCGTTATCGGTTTAAAGCTAGCTGATAATAAAGAAGAAACT
GTGGAAGGAGCTGCTTAAAG

Downstream 100 bases:

>100_bases
AGATATACTGTATCTCCTAACAAGTTGTTAGGAGATTTTTATTGTAAAAAGTACACGATAATTGACAGTATAGCTAGTTA
TTCTATAAAATGAGTGACAG

Product: sugE protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 104; Mature: 103

Protein sequence:

>104_residues
MGWFFVFCAAISEIVGVIGLKMYSKDKTLANGALYIGGFATSFAFLYTSFLFLQVSVAYAVWIGIGTAGAVLLNMFLFGE
SKSKARIISVALIVCGVTGLKALS

Sequences:

>Translated_104_residues
MGWFFVFCAAISEIVGVIGLKMYSKDKTLANGALYIGGFATSFAFLYTSFLFLQVSVAYAVWIGIGTAGAVLLNMFLFGE
SKSKARIISVALIVCGVTGLKALS
>Mature_103_residues
GWFFVFCAAISEIVGVIGLKMYSKDKTLANGALYIGGFATSFAFLYTSFLFLQVSVAYAVWIGIGTAGAVLLNMFLFGES
KSKARIISVALIVCGVTGLKALS

Specific function: Part of a multidrug efflux pump. Confers resistance to a broad range of toxic compounds such as cationic dyes, neutral and anionic antimicrobials [H]

COG id: COG2076

COG function: function code P; Membrane transporters of cations and cationic drugs

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small multidrug resistance (SMR) protein family. YkkC/ykkD (TC 2.A.7.1.5) subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082378, Length=101, Percent_Identity=37.6237623762376, Blast_Score=65, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000390 [H]

Pfam domain/function: PF00893 Multi_Drug_Res [H]

EC number: NA

Molecular weight: Translated: 11035; Mature: 10904

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGWFFVFCAAISEIVGVIGLKMYSKDKTLANGALYIGGFATSFAFLYTSFLFLQVSVAYA
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHH
VWIGIGTAGAVLLNMFLFGESKSKARIISVALIVCGVTGLKALS
HHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GWFFVFCAAISEIVGVIGLKMYSKDKTLANGALYIGGFATSFAFLYTSFLFLQVSVAYA
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHH
VWIGIGTAGAVLLNMFLFGESKSKARIISVALIVCGVTGLKALS
HHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8682784; 9384377 [H]