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The map label for this gene is yndD [H]

Identifier: 49183700

GI number: 49183700

Start: 727367

End: 728803

Strand: Direct

Name: yndD [H]

Synonym: BAS0675

Alternate gene names: 49183700

Gene position: 727367-728803 (Clockwise)

Preceding gene: 49183699

Following gene: 49183701

Centisome position: 13.91

GC content: 36.81

Gene sequence:

>1437_bases
ATGAAAAAAATTAGAGATGAGTTAGGTTCGCCTAATGATTTGACAATTAGGGAAGTTGCCCTTGCTGGTAGTTTTACACG
TTGTGCTGTTGTCTTTTTATGTGGGTTAACAGATAAGGATAACGTTTATAAATATGTAGTTCGTACGCTTCAATATGAAG
AGATACAAAAAGACGAAGCTGTTGTTCAAACATTATTAGATCGCTTTATTTCTATTGCAGAAGTTGGTAAGAAGACAACA
TTTCCGGACATTATAAATGCGATTTTAGCGGGAGATACAGTTATATTAATTGATAATATTCAAACTGCTATCGTGATTAA
TAGTAGAGCTTGGGAAAAAAGAAGTTTAGAATCGCCAGTAACAGAAGATTTAATACGTGGACCGAGGATAGGATTAAATG
AAGATATTAACGTGAATAAAATGTTAATTCGCCGTAGTTTACGTGACCCAAAGCTGAGATTTCAATCTTATATTATGGGA
AAGAGATCCCAAAAAGAAGTGACTTTAGTATATATAGAAGACATCATTAATCCTTACATTGTAAAAGAGCTAGATCGGCG
TCTTCAATCCATAGTGACAGATGTCGTTTTTGAGACGGGTACAATTGAGCAATTAATTCAAGATAATAATTTGTCACCGT
TTCCGCAGTTTTTGAATACGGAAAGGCCAGATAATATTGTGGCCTCATTAGCGAAAGGAAAGGCAGCTATTTTGGTGGAT
GGATCACCGTTTGCCCTTATAGCTCCGCTAGTATTTGTTGATATTTTTCAATCTGTGGAAGATCACTATGAGCGTTGGGT
AATAGGGACTTTATTAAGAATTTTGCGGATGGGTTCTGGTATAGTTGCAATTTTAATGCCGGCGATGTATGTAGCGCTCG
TCTCATATCACCAAGGACTTATTCCTTCTAAATTGGCTTATTCGATTGCTGGAGCAAGAGAAGGTGTTCCTTTTCCTGCC
TATATTGAAACGTTAATGATGGCATTAACGATGGAGTTAATACGAGAAGCAGGAATTAGGTTGCCGAAACCGATGGGACA
AACAATTGGGATTGTAGGTGGTCTTGTAATTGGAGAAGCAGCGGTGAATGCAGGAATTGTAAATCCATTTTTAGTTATCA
TTATTGCGGTTACAGCTATTGCTACATTTTCACTTCCAGTGTATAGCATCACAATTACGTTTCGGATTTTACTTTTCGTC
TTTGTATTAGCAGCAACGGCTTTTGGATTGTATGGAATCATTCTAGCTCTTATTGCGCTTGCTGTTCATATTACAAATTT
AACAAGTGTTGGTGTACCGTATACAACTCCAATTGCTCCTGCATTTTATAAAGATTGGAAAGAAGAGTTTATTCGCATGC
CAAAATCAATGTTGAAAGAGAGACCGGAATATTTACAAACGAAAGATTCTACAGTACGTCCAAAGGAGCGAGAATAA

Upstream 100 bases:

>100_bases
GTATATATTTTCTTCTATTAGCGGAATCTAACTAAAAACTTGTTGAAAAGGAAGTTAGGTGGGGGATTTGTTAGAGCTAA
AAGGTAACTTATTTGAAGTT

Downstream 100 bases:

>100_bases
TTGAAACCATTTGAGTATGGCGATGAAGAAATTGGATCTCGGGAAATTGGGTTTGCGGTATCATCGACCATTATTGGTAT
AGGCGCATTATCTATGCCAA

Product: spore germination protein GerLA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MKKIRDELGSPNDLTIREVALAGSFTRCAVVFLCGLTDKDNVYKYVVRTLQYEEIQKDEAVVQTLLDRFISIAEVGKKTT
FPDIINAILAGDTVILIDNIQTAIVINSRAWEKRSLESPVTEDLIRGPRIGLNEDINVNKMLIRRSLRDPKLRFQSYIMG
KRSQKEVTLVYIEDIINPYIVKELDRRLQSIVTDVVFETGTIEQLIQDNNLSPFPQFLNTERPDNIVASLAKGKAAILVD
GSPFALIAPLVFVDIFQSVEDHYERWVIGTLLRILRMGSGIVAILMPAMYVALVSYHQGLIPSKLAYSIAGAREGVPFPA
YIETLMMALTMELIREAGIRLPKPMGQTIGIVGGLVIGEAAVNAGIVNPFLVIIIAVTAIATFSLPVYSITITFRILLFV
FVLAATAFGLYGIILALIALAVHITNLTSVGVPYTTPIAPAFYKDWKEEFIRMPKSMLKERPEYLQTKDSTVRPKERE

Sequences:

>Translated_478_residues
MKKIRDELGSPNDLTIREVALAGSFTRCAVVFLCGLTDKDNVYKYVVRTLQYEEIQKDEAVVQTLLDRFISIAEVGKKTT
FPDIINAILAGDTVILIDNIQTAIVINSRAWEKRSLESPVTEDLIRGPRIGLNEDINVNKMLIRRSLRDPKLRFQSYIMG
KRSQKEVTLVYIEDIINPYIVKELDRRLQSIVTDVVFETGTIEQLIQDNNLSPFPQFLNTERPDNIVASLAKGKAAILVD
GSPFALIAPLVFVDIFQSVEDHYERWVIGTLLRILRMGSGIVAILMPAMYVALVSYHQGLIPSKLAYSIAGAREGVPFPA
YIETLMMALTMELIREAGIRLPKPMGQTIGIVGGLVIGEAAVNAGIVNPFLVIIIAVTAIATFSLPVYSITITFRILLFV
FVLAATAFGLYGIILALIALAVHITNLTSVGVPYTTPIAPAFYKDWKEEFIRMPKSMLKERPEYLQTKDSTVRPKERE
>Mature_478_residues
MKKIRDELGSPNDLTIREVALAGSFTRCAVVFLCGLTDKDNVYKYVVRTLQYEEIQKDEAVVQTLLDRFISIAEVGKKTT
FPDIINAILAGDTVILIDNIQTAIVINSRAWEKRSLESPVTEDLIRGPRIGLNEDINVNKMLIRRSLRDPKLRFQSYIMG
KRSQKEVTLVYIEDIINPYIVKELDRRLQSIVTDVVFETGTIEQLIQDNNLSPFPQFLNTERPDNIVASLAKGKAAILVD
GSPFALIAPLVFVDIFQSVEDHYERWVIGTLLRILRMGSGIVAILMPAMYVALVSYHQGLIPSKLAYSIAGAREGVPFPA
YIETLMMALTMELIREAGIRLPKPMGQTIGIVGGLVIGEAAVNAGIVNPFLVIIIAVTAIATFSLPVYSITITFRILLFV
FVLAATAFGLYGIILALIALAVHITNLTSVGVPYTTPIAPAFYKDWKEEFIRMPKSMLKERPEYLQTKDSTVRPKERE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004995 [H]

Pfam domain/function: PF03323 GerA [H]

EC number: NA

Molecular weight: Translated: 53291; Mature: 53291

Theoretical pI: Translated: 7.49; Mature: 7.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIRDELGSPNDLTIREVALAGSFTRCAVVFLCGLTDKDNVYKYVVRTLQYEEIQKDEA
CCCHHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
VVQTLLDRFISIAEVGKKTTFPDIINAILAGDTVILIDNIQTAIVINSRAWEKRSLESPV
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEEEEECCCEEEEECCCCHHHHCCCCCH
TEDLIRGPRIGLNEDINVNKMLIRRSLRDPKLRFQSYIMGKRSQKEVTLVYIEDIINPYI
HHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEHHHHHCHHH
VKELDRRLQSIVTDVVFETGTIEQLIQDNNLSPFPQFLNTERPDNIVASLAKGKAAILVD
HHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHCCCEEEEEC
GSPFALIAPLVFVDIFQSVEDHYERWVIGTLLRILRMGSGIVAILMPAMYVALVSYHQGL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
IPSKLAYSIAGAREGVPFPAYIETLMMALTMELIREAGIRLPKPMGQTIGIVGGLVIGEA
CHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
AVNAGIVNPFLVIIIAVTAIATFSLPVYSITITFRILLFVFVLAATAFGLYGIILALIAL
HHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVHITNLTSVGVPYTTPIAPAFYKDWKEEFIRMPKSMLKERPEYLQTKDSTVRPKERE
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHCCHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MKKIRDELGSPNDLTIREVALAGSFTRCAVVFLCGLTDKDNVYKYVVRTLQYEEIQKDEA
CCCHHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
VVQTLLDRFISIAEVGKKTTFPDIINAILAGDTVILIDNIQTAIVINSRAWEKRSLESPV
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEEEEECCCEEEEECCCCHHHHCCCCCH
TEDLIRGPRIGLNEDINVNKMLIRRSLRDPKLRFQSYIMGKRSQKEVTLVYIEDIINPYI
HHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEHHHHHCHHH
VKELDRRLQSIVTDVVFETGTIEQLIQDNNLSPFPQFLNTERPDNIVASLAKGKAAILVD
HHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHCCCEEEEEC
GSPFALIAPLVFVDIFQSVEDHYERWVIGTLLRILRMGSGIVAILMPAMYVALVSYHQGL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
IPSKLAYSIAGAREGVPFPAYIETLMMALTMELIREAGIRLPKPMGQTIGIVGGLVIGEA
CHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
AVNAGIVNPFLVIIIAVTAIATFSLPVYSITITFRILLFVFVLAATAFGLYGIILALIAL
HHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVHITNLTSVGVPYTTPIAPAFYKDWKEEFIRMPKSMLKERPEYLQTKDSTVRPKERE
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHCCHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]