Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 49183620

GI number: 49183620

Start: 642479

End: 644182

Strand: Direct

Name: yciR [C]

Synonym: BAS0595

Alternate gene names: 49183620

Gene position: 642479-644182 (Clockwise)

Preceding gene: 49183619

Following gene: 49183622

Centisome position: 12.29

GC content: 34.86

Gene sequence:

>1704_bases
ATGCTAGAACAAAGAGGTCATGCATTATATGAATCTTCATTGCGAGATTTAAAGTTAGCATTAGATGAGTCTTCAATTGT
TGCGATTACAGACCGAAAGGGTCTTATTACATATGTAAATGATAAGTTTTGTGAAATCTCCAAATATACAAGAGAAGAGT
TAATAGGGAAAGATCATCGTATTTTAAATTCAGGATATCACCCGAAAACATTTTTTCAAATGCTATGGAAGCGTATTTTG
AGCGGAAAAGTATGGAGAGGTGAGATTCGAAATCAAGCAAAAGATGGTACATATTATTGGGTTAAAACAACAATTGTTCT
ATTTTTAAATGAAAAAGGAGAGCCATATCAATTTATCGCGATCCGAAATGATATTAGTAGTAGGAAAGAAGCAGAACAGA
GGTTGCGGTTAAGCGAAAGTCGTTATAGGGAGCTGGCTTATCATGATGCTTTAACGAGTTTACCGAACCGTTTACAATTA
ATAACGACTGTTAATGAGTTGATTGCAGATAAAAACGAGTTTGGTATGATTTATTTTGATTTGGATCGTTTTAAATTAGT
AAACGATACGCTAGGTCATATGATAGGAGATTTACTTTTAAGCGAAGTTGCTTCACGGTTGCATTATGTGCTAGGAGAGA
AAGATGTTCTGGCTAGGCTGGGTGGCGACGAATTTGTGTTGTTAACAAAAAATCATAAACAAGATGAGATGAGGCAGCTA
GCGACATCTGTGTTGTCATGCTTTCAGGCACCATTTATGCTTGAAGGTCATGAAGTATACATTTCGGCTAGTCTAGGACT
GTGCTCATATCCGCAAGATGGACAAGATGTAGAAACGCTATTGAAGAATTCGGATTTAGCTATGTATAGCGCGAAAGAAC
AGGGGAGAAACGCCGCGTGTTTCTTTACAGATGAGTTACGTGCGAAAATAAATCGTAGAATGAAAATTGAATTTGCTTTG
CAAAAGGCAATTCGTGATGAAGAGTTAGATGTGGTGTTGCAGCCTATTATTGATTTGAAAACGAAGAAATATACTGGTAT
CGAGGCTTTAGTACGTTGTACGACAGAAGAAGGTCCGATTTCCCCAAGCGAATTTATTCCTATAGCTGAAGAATCTGGAC
TTATTATAAAATTAGGAGACTGGGTGTTAGAAAAGTCATGTCGCTTGTTTAAAACATTGCCTGAGTATGAAGAAGGACTA
AAGTTATCTGTGAATTTATCCATACAACAATTAATGCAAAAGCGTTTTATTATATCTGTACGTAGTATTTTAAGGAGAAC
TGGTTTTCCTGCAAATCGTTTAATTTTAGAAATAACGGAAAGCATTGCTGTTCGTCATTTTGATTATATTATTGCTACAT
TACAAGAATTAAGAAATATGGGTATTTTAATTGCTTTAGATGACTTCGGAACAGGCTATTCTTCCTTATATTATTTAAAA
CAACTACCGTTGGATATAGTAAAAATTGATCGTAATTTTATTCGTGAATTTCATTATGATCATGCACAACCAGAGCGAAC
GATTGTAAAATCTGTTATTGAAATTGCCCATAGTTTAAATTTAGCAGTAGTTGCTGAAGGGGTAGAAACAGTAGAGCAAG
AAAGCTTATTAAAATCGATGGGCTGTGATTATGTACAAGGATTTTATTATGCAAAACCTTTATCTGTAGCAGAGTTAAAG
GAAAAGTTAATTATAGACTTCTAA

Upstream 100 bases:

>100_bases
GATTTATGTAAAGGACGATTATTAGGAAATGAAATATCTCTATTTCTATAAAAAGAAACAAGTTATGTTTTAGTCAGATA
GGAAGCAAGGAGAGATGCGC

Downstream 100 bases:

>100_bases
TAAAAAAGAGAAGCCAGAAGCTTCTCTTTTTTAATTCATTTTTTGTGAGTCTTTCATTAGTACAGGATAAAGAATAAGGC
CTAATACGAACAATCCGATT

Product: sensory box/GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 567; Mature: 567

Protein sequence:

>567_residues
MLEQRGHALYESSLRDLKLALDESSIVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHPKTFFQMLWKRIL
SGKVWRGEIRNQAKDGTYYWVKTTIVLFLNEKGEPYQFIAIRNDISSRKEAEQRLRLSESRYRELAYHDALTSLPNRLQL
ITTVNELIADKNEFGMIYFDLDRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHKQDEMRQL
ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDELRAKINRRMKIEFAL
QKAIRDEELDVVLQPIIDLKTKKYTGIEALVRCTTEEGPISPSEFIPIAEESGLIIKLGDWVLEKSCRLFKTLPEYEEGL
KLSVNLSIQQLMQKRFIISVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLYYLK
QLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLLKSMGCDYVQGFYYAKPLSVAELK
EKLIIDF

Sequences:

>Translated_567_residues
MLEQRGHALYESSLRDLKLALDESSIVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHPKTFFQMLWKRIL
SGKVWRGEIRNQAKDGTYYWVKTTIVLFLNEKGEPYQFIAIRNDISSRKEAEQRLRLSESRYRELAYHDALTSLPNRLQL
ITTVNELIADKNEFGMIYFDLDRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHKQDEMRQL
ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDELRAKINRRMKIEFAL
QKAIRDEELDVVLQPIIDLKTKKYTGIEALVRCTTEEGPISPSEFIPIAEESGLIIKLGDWVLEKSCRLFKTLPEYEEGL
KLSVNLSIQQLMQKRFIISVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLYYLK
QLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLLKSMGCDYVQGFYYAKPLSVAELK
EKLIIDF
>Mature_567_residues
MLEQRGHALYESSLRDLKLALDESSIVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHPKTFFQMLWKRIL
SGKVWRGEIRNQAKDGTYYWVKTTIVLFLNEKGEPYQFIAIRNDISSRKEAEQRLRLSESRYRELAYHDALTSLPNRLQL
ITTVNELIADKNEFGMIYFDLDRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHKQDEMRQL
ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDELRAKINRRMKIEFAL
QKAIRDEELDVVLQPIIDLKTKKYTGIEALVRCTTEEGPISPSEFIPIAEESGLIIKLGDWVLEKSCRLFKTLPEYEEGL
KLSVNLSIQQLMQKRFIISVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLYYLK
QLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLLKSMGCDYVQGFYYAKPLSVAELK
EKLIIDF

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=552, Percent_Identity=33.5144927536232, Blast_Score=293, Evalue=2e-80,
Organism=Escherichia coli, GI87081921, Length=494, Percent_Identity=31.9838056680162, Blast_Score=217, Evalue=2e-57,
Organism=Escherichia coli, GI226510982, Length=423, Percent_Identity=29.3144208037825, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI1790496, Length=239, Percent_Identity=36.8200836820084, Blast_Score=148, Evalue=8e-37,
Organism=Escherichia coli, GI1787055, Length=450, Percent_Identity=26.2222222222222, Blast_Score=142, Evalue=8e-35,
Organism=Escherichia coli, GI87081845, Length=268, Percent_Identity=33.5820895522388, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI1788849, Length=427, Percent_Identity=27.4004683840749, Blast_Score=136, Evalue=4e-33,
Organism=Escherichia coli, GI87081980, Length=260, Percent_Identity=32.3076923076923, Blast_Score=128, Evalue=1e-30,
Organism=Escherichia coli, GI1788502, Length=264, Percent_Identity=32.1969696969697, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1786507, Length=238, Percent_Identity=31.0924369747899, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI87081743, Length=276, Percent_Identity=33.695652173913, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI87082096, Length=419, Percent_Identity=26.2529832935561, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1788381, Length=344, Percent_Identity=29.0697674418605, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI87081977, Length=167, Percent_Identity=34.1317365269461, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI1788956, Length=171, Percent_Identity=32.1637426900585, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI87082007, Length=159, Percent_Identity=35.2201257861635, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1787816, Length=169, Percent_Identity=33.1360946745562, Blast_Score=82, Evalue=9e-17,
Organism=Escherichia coli, GI1787410, Length=236, Percent_Identity=27.9661016949153, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI87081881, Length=184, Percent_Identity=31.5217391304348, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI145693134, Length=200, Percent_Identity=30.5, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1789650, Length=448, Percent_Identity=20.9821428571429, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1789453, Length=101, Percent_Identity=32.6732673267327, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1787262, Length=163, Percent_Identity=28.2208588957055, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1786584, Length=182, Percent_Identity=26.9230769230769, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1787802, Length=127, Percent_Identity=29.1338582677165, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 65204; Mature: 65204

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEQRGHALYESSLRDLKLALDESSIVAITDRKGLITYVNDKFCEISKYTREELIGKDHR
CCCCCCCHHHHHHHHHHHHEECCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHCCCCHH
ILNSGYHPKTFFQMLWKRILSGKVWRGEIRNQAKDGTYYWVKTTIVLFLNEKGEPYQFIA
HHCCCCCHHHHHHHHHHHHHCCCCEEHHHHCCCCCCEEEEEEEEEEEEECCCCCCEEEEE
IRNDISSRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKNEFGMIYFD
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEE
LDRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHKQDEMRQL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEEEECCCCHHHHHHH
ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC
HHHHHHHHCCCCEEECCEEEEEECCCCCCCCCCCHHHHHHHCCCCCEEEEHHHCCCCEEE
FFTDELRAKINRRMKIEFALQKAIRDEELDVVLQPIIDLKTKKYTGIEALVRCTTEEGPI
EEHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHEECCCCCCC
SPSEFIPIAEESGLIIKLGDWVLEKSCRLFKTLPEYEEGLKLSVNLSIQQLMQKRFIISV
CHHHCCCEECCCCEEEEECHHHHHHHHHHHHHCCHHHCCCEEEEECCHHHHHHHHHHHHH
RSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLYYLK
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHH
QLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLLKSM
HCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHH
GCDYVQGFYYAKPLSVAELKEKLIIDF
CCHHHHCCHHCCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MLEQRGHALYESSLRDLKLALDESSIVAITDRKGLITYVNDKFCEISKYTREELIGKDHR
CCCCCCCHHHHHHHHHHHHEECCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHCCCCHH
ILNSGYHPKTFFQMLWKRILSGKVWRGEIRNQAKDGTYYWVKTTIVLFLNEKGEPYQFIA
HHCCCCCHHHHHHHHHHHHHCCCCEEHHHHCCCCCCEEEEEEEEEEEEECCCCCCEEEEE
IRNDISSRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKNEFGMIYFD
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEE
LDRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHKQDEMRQL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEEEECCCCHHHHHHH
ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC
HHHHHHHHCCCCEEECCEEEEEECCCCCCCCCCCHHHHHHHCCCCCEEEEHHHCCCCEEE
FFTDELRAKINRRMKIEFALQKAIRDEELDVVLQPIIDLKTKKYTGIEALVRCTTEEGPI
EEHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHEECCCCCCC
SPSEFIPIAEESGLIIKLGDWVLEKSCRLFKTLPEYEEGLKLSVNLSIQQLMQKRFIISV
CHHHCCCEECCCCEEEEECHHHHHHHHHHHHHCCHHHCCCEEEEECCHHHHHHHHHHHHH
RSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLYYLK
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHH
QLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLLKSM
HCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHH
GCDYVQGFYYAKPLSVAELKEKLIIDF
CCHHHHCCHHCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]