| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
Click here to switch to the map view.
The map label for this gene is 46447657
Identifier: 46447657
GI number: 46447657
Start: 2404926
End: 2406377
Strand: Reverse
Name: 46447657
Synonym: pc2023
Alternate gene names: NA
Gene position: 2406377-2404926 (Counterclockwise)
Preceding gene: 46447661
Following gene: 46447656
Centisome position: 99.67
GC content: 31.89
Gene sequence:
>1452_bases ATGATATTATCTACAGCTACAGCATCACCAGCAGCTACAGTATCACCAGCGAATTTAGAAGAATTGCTTCAAGCGCAGAA AGAAATGGACGCAAGGATCACGAATCTTGATAATATCCTTTTAAAAGCTCAGGAAAAAGCTGATGAACAAGTTAGAAAGC TTGCTAATGAACTCTCTAGAGTTAAAGATGATAATACTAGTCTTAATGGCAGAATTAACATTCTTAGTGATGATAATACT AGCCTTAATAACAGAATTAACATTCTTAATAAGGATAATGACAGTCTTCGAAATCAAATCGAGGAACAAAATCTGAAAAT AACTTTGCTTAGTGAAGAATCTCGAATAGTTGAAGGAACTTTAAAAACTACTCAAAAAACTTTAGAAGAAAAAACTAAGC AAATAGCAGAAATTCAAGAAACGCTTGAAAAATACGAAAAAGAAAAACAAGAGCTTTCTGAGAAAAATACAAAGCTTGTC AATGAAAATGCCGAACTTGTCAAGGAAAAAGAGGGTTTAAATGCACTTTTAGAAGCTTTACGCAAAGAAAAAGCTGATCT TGAAAATAAAGAGAAAGCATATCAAGAAGAAATAGAAGCGCTCAGTGTAGTTTTAGATGAGACATTAAAATGTCAACTTG AATTGGAAAAAAACCATCAATTGGAAATTTCTGAAAAAACAAAAATAATAGCCAAGCAACAGCTTAAATGCGAAAATTAT GAAAAAGAAGCTCTTTCAAATACAAATAAATTAGTTGAAACGGAAAAAGACCGAGATGAAGCTAAACACAAATTGAGTTT AGAGCAAACAAAACATATTAAAACAAGACAAAAATTGTTTGAAGAACAAGAAAAGTATATTACAGCAAGCCGGATGTTAG ACAAAGAACAAAAATCGCACTCTGAAACAAGCAAGAGCTTGCTTATAGAGCAAACAGCACGTGCTATTACAAACCAAATT TTGTTTAAAGAAAAAGCAGAACATACTGATACAAAGCAGAAATTAGATTTAGAGCAAGCAAAATATGCAGCAGCAAAAGA AGATTTAAATAAAGCCAAGATCGATGCTGAGAAAGCGCAAGAAGATCTCATTAATTCAATTCAAAAGCAATTAGATGAAA TGCTCAATACTCATGAAGATGAATTAACAAAAATAAAAGACAATTACACTAAATTGCAAGAAGGTGTACAAGCTCAAAAA AATGAACTTAAAAAGATTGTTTCGAGACTTAGCAATATAAATTTGCAAGATCCTCAGCTGTTTAGAATGTGGATATTAGA TTTTGCTATGTTTGCCGGTTTAAATATCGAAGACCGAAAAAGCTTGGAAACTAAAATATCTCAACTTCATCAGCAGCTAG CAAGCCCAACCAACCTAATTTCATGGAAACATCTTGTATTACAATTTTGCAATACATTGATTACAACAGCAATAGTTAGA AAGGTGAGTTAA
Upstream 100 bases:
>100_bases TATATTGGCTATACAAATGACTTTGATAGCAATAAAAAAAGGCATTTATAAATAATCAACTCCTTTAAGTTATTTAAACA ATTTTCAAGAGGTAAATATT
Downstream 100 bases:
>100_bases TTAAAGAATTGCTTTAGCTAAAACACAGGTTGGAAAAAATTCTAACCTGTTTTAATATTTATTATATCTTTGTTATACAA GGGGTATCCTTATGTTGTTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 483; Mature: 483
Protein sequence:
>483_residues MILSTATASPAATVSPANLEELLQAQKEMDARITNLDNILLKAQEKADEQVRKLANELSRVKDDNTSLNGRINILSDDNT SLNNRINILNKDNDSLRNQIEEQNLKITLLSEESRIVEGTLKTTQKTLEEKTKQIAEIQETLEKYEKEKQELSEKNTKLV NENAELVKEKEGLNALLEALRKEKADLENKEKAYQEEIEALSVVLDETLKCQLELEKNHQLEISEKTKIIAKQQLKCENY EKEALSNTNKLVETEKDRDEAKHKLSLEQTKHIKTRQKLFEEQEKYITASRMLDKEQKSHSETSKSLLIEQTARAITNQI LFKEKAEHTDTKQKLDLEQAKYAAAKEDLNKAKIDAEKAQEDLINSIQKQLDEMLNTHEDELTKIKDNYTKLQEGVQAQK NELKKIVSRLSNINLQDPQLFRMWILDFAMFAGLNIEDRKSLETKISQLHQQLASPTNLISWKHLVLQFCNTLITTAIVR KVS
Sequences:
>Translated_483_residues MILSTATASPAATVSPANLEELLQAQKEMDARITNLDNILLKAQEKADEQVRKLANELSRVKDDNTSLNGRINILSDDNT SLNNRINILNKDNDSLRNQIEEQNLKITLLSEESRIVEGTLKTTQKTLEEKTKQIAEIQETLEKYEKEKQELSEKNTKLV NENAELVKEKEGLNALLEALRKEKADLENKEKAYQEEIEALSVVLDETLKCQLELEKNHQLEISEKTKIIAKQQLKCENY EKEALSNTNKLVETEKDRDEAKHKLSLEQTKHIKTRQKLFEEQEKYITASRMLDKEQKSHSETSKSLLIEQTARAITNQI LFKEKAEHTDTKQKLDLEQAKYAAAKEDLNKAKIDAEKAQEDLINSIQKQLDEMLNTHEDELTKIKDNYTKLQEGVQAQK NELKKIVSRLSNINLQDPQLFRMWILDFAMFAGLNIEDRKSLETKISQLHQQLASPTNLISWKHLVLQFCNTLITTAIVR KVS >Mature_483_residues MILSTATASPAATVSPANLEELLQAQKEMDARITNLDNILLKAQEKADEQVRKLANELSRVKDDNTSLNGRINILSDDNT SLNNRINILNKDNDSLRNQIEEQNLKITLLSEESRIVEGTLKTTQKTLEEKTKQIAEIQETLEKYEKEKQELSEKNTKLV NENAELVKEKEGLNALLEALRKEKADLENKEKAYQEEIEALSVVLDETLKCQLELEKNHQLEISEKTKIIAKQQLKCENY EKEALSNTNKLVETEKDRDEAKHKLSLEQTKHIKTRQKLFEEQEKYITASRMLDKEQKSHSETSKSLLIEQTARAITNQI LFKEKAEHTDTKQKLDLEQAKYAAAKEDLNKAKIDAEKAQEDLINSIQKQLDEMLNTHEDELTKIKDNYTKLQEGVQAQK NELKKIVSRLSNINLQDPQLFRMWILDFAMFAGLNIEDRKSLETKISQLHQQLASPTNLISWKHLVLQFCNTLITTAIVR KVS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55583; Mature: 55583
Theoretical pI: Translated: 5.42; Mature: 5.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILSTATASPAATVSPANLEELLQAQKEMDARITNLDNILLKAQEKADEQVRKLANELSR CEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VKDDNTSLNGRINILSDDNTSLNNRINILNKDNDSLRNQIEEQNLKITLLSEESRIVEGT HCCCCCCCCCEEEEEECCCCCCCCCEEEECCCCHHHHHHHHHCCCEEEEEECCCHHHHHH LKTTQKTLEEKTKQIAEIQETLEKYEKEKQELSEKNTKLVNENAELVKEKEGLNALLEAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH RKEKADLENKEKAYQEEIEALSVVLDETLKCQLELEKNHQLEISEKTKIIAKQQLKCENY HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEHHHHHHHHHHHHHHHHH EKEALSNTNKLVETEKDRDEAKHKLSLEQTKHIKTRQKLFEEQEKYITASRMLDKEQKSH HHHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SETSKSLLIEQTARAITNQILFKEKAEHTDTKQKLDLEQAKYAAAKEDLNKAKIDAEKAQ HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH EDLINSIQKQLDEMLNTHEDELTKIKDNYTKLQEGVQAQKNELKKIVSRLSNINLQDPQL HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH FRMWILDFAMFAGLNIEDRKSLETKISQLHQQLASPTNLISWKHLVLQFCNTLITTAIVR HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH KVS HCC >Mature Secondary Structure MILSTATASPAATVSPANLEELLQAQKEMDARITNLDNILLKAQEKADEQVRKLANELSR CEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VKDDNTSLNGRINILSDDNTSLNNRINILNKDNDSLRNQIEEQNLKITLLSEESRIVEGT HCCCCCCCCCEEEEEECCCCCCCCCEEEECCCCHHHHHHHHHCCCEEEEEECCCHHHHHH LKTTQKTLEEKTKQIAEIQETLEKYEKEKQELSEKNTKLVNENAELVKEKEGLNALLEAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH RKEKADLENKEKAYQEEIEALSVVLDETLKCQLELEKNHQLEISEKTKIIAKQQLKCENY HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEHHHHHHHHHHHHHHHHH EKEALSNTNKLVETEKDRDEAKHKLSLEQTKHIKTRQKLFEEQEKYITASRMLDKEQKSH HHHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SETSKSLLIEQTARAITNQILFKEKAEHTDTKQKLDLEQAKYAAAKEDLNKAKIDAEKAQ HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH EDLINSIQKQLDEMLNTHEDELTKIKDNYTKLQEGVQAQKNELKKIVSRLSNINLQDPQL HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH FRMWILDFAMFAGLNIEDRKSLETKISQLHQQLASPTNLISWKHLVLQFCNTLITTAIVR HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH KVS HCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA