Definition Candidatus Protochlamydia amoebophila UWE25, complete genome.
Accession NC_005861
Length 2,414,465

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The map label for this gene is 46447605

Identifier: 46447605

GI number: 46447605

Start: 2350735

End: 2351406

Strand: Reverse

Name: 46447605

Synonym: pc1971

Alternate gene names: NA

Gene position: 2351406-2350735 (Counterclockwise)

Preceding gene: 46447608

Following gene: 46447600

Centisome position: 97.39

GC content: 29.02

Gene sequence:

>672_bases
ATGATTAACCTTAATGGATTGCAATTTCAGGCGAATTTGTTAATGAGCCTGAGTAAAACGCTGAAAAAAGAAGATCTCAA
TCTAGATCATTTGGACATTATTGATAGTTACATTGGTAGAACAAAATTAAAAACTACCTTTATTTACGAATGGTTAAAGG
AACATAGAAATTTAGCCATGCAAGAAAGCACTCATCCTAAATTTTATATTATTAAACAGGATTTTGCTAATCATTTGGAC
AAACGAATTGCTACATTAAAATTTTATCTTAGTGTTCAGGATAAAAAATTCCAAGAATGCATTCAGAAAGGCATATCAAG
TAATGAACTATGGCAAGAGAATAGTAAAAAAGAAAATACAAACGAAGTAGATTTACTAAATATAAGTATGCAAATACAAG
ATCTTTTATTTACTTGTGAAGAAGTGATCACATACCTTACCCCTCAAGCTAAAGATTTAACCAAAAAAGAAATCAACCCT
TTTATTGAAAAATCCCTTCCCGTTTATTTAAATTTACTGCCTACAACCTTTTCTTCAGATTTGAAAGAAGACATACAAAA
AAATTTCAAAAAACTGGAAGAATTAATTGTTGAAGAAGATTTTGAGAAAGCTAAAGACCAATTAGCAAAAACGAAAGAGC
AGATAAAAGCTAATTGTGTATATGTAAGATAG

Upstream 100 bases:

>100_bases
TGTCCATGTTTATGTTATTTGAGAATTAATTATAACTATTTAATTTTTATATGAGAATTTTTGATCGTGAAGAAATAAGA
AAAATAATAAAGGAAAAATT

Downstream 100 bases:

>100_bases
TAGTTCAAACTTCGTCATACAAGAGAAGAGACTTGTTCATATAGACTATAGAATGGGTTTTCTATATCATAGATTTGATT
GATTTTTTTTAATATGTTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MINLNGLQFQANLLMSLSKTLKKEDLNLDHLDIIDSYIGRTKLKTTFIYEWLKEHRNLAMQESTHPKFYIIKQDFANHLD
KRIATLKFYLSVQDKKFQECIQKGISSNELWQENSKKENTNEVDLLNISMQIQDLLFTCEEVITYLTPQAKDLTKKEINP
FIEKSLPVYLNLLPTTFSSDLKEDIQKNFKKLEELIVEEDFEKAKDQLAKTKEQIKANCVYVR

Sequences:

>Translated_223_residues
MINLNGLQFQANLLMSLSKTLKKEDLNLDHLDIIDSYIGRTKLKTTFIYEWLKEHRNLAMQESTHPKFYIIKQDFANHLD
KRIATLKFYLSVQDKKFQECIQKGISSNELWQENSKKENTNEVDLLNISMQIQDLLFTCEEVITYLTPQAKDLTKKEINP
FIEKSLPVYLNLLPTTFSSDLKEDIQKNFKKLEELIVEEDFEKAKDQLAKTKEQIKANCVYVR
>Mature_223_residues
MINLNGLQFQANLLMSLSKTLKKEDLNLDHLDIIDSYIGRTKLKTTFIYEWLKEHRNLAMQESTHPKFYIIKQDFANHLD
KRIATLKFYLSVQDKKFQECIQKGISSNELWQENSKKENTNEVDLLNISMQIQDLLFTCEEVITYLTPQAKDLTKKEINP
FIEKSLPVYLNLLPTTFSSDLKEDIQKNFKKLEELIVEEDFEKAKDQLAKTKEQIKANCVYVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26259; Mature: 26259

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINLNGLQFQANLLMSLSKTLKKEDLNLDHLDIIDSYIGRTKLKTTFIYEWLKEHRNLAM
CCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
QESTHPKFYIIKQDFANHLDKRIATLKFYLSVQDKKFQECIQKGISSNELWQENSKKENT
CCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHCCCCCCC
NEVDLLNISMQIQDLLFTCEEVITYLTPQAKDLTKKEINPFIEKSLPVYLNLLPTTFSSD
CCEEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHH
LKEDIQKNFKKLEELIVEEDFEKAKDQLAKTKEQIKANCVYVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEC
>Mature Secondary Structure
MINLNGLQFQANLLMSLSKTLKKEDLNLDHLDIIDSYIGRTKLKTTFIYEWLKEHRNLAM
CCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
QESTHPKFYIIKQDFANHLDKRIATLKFYLSVQDKKFQECIQKGISSNELWQENSKKENT
CCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHCCCCCCC
NEVDLLNISMQIQDLLFTCEEVITYLTPQAKDLTKKEINPFIEKSLPVYLNLLPTTFSSD
CCEEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHH
LKEDIQKNFKKLEELIVEEDFEKAKDQLAKTKEQIKANCVYVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA