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The map label for this gene is prt1 [H]

Identifier: 46447592

GI number: 46447592

Start: 2333167

End: 2334627

Strand: Reverse

Name: prt1 [H]

Synonym: pc1958

Alternate gene names: 46447592

Gene position: 2334627-2333167 (Counterclockwise)

Preceding gene: 46447593

Following gene: 46447590

Centisome position: 96.69

GC content: 35.11

Gene sequence:

>1461_bases
ATGAACAATTCAAGCTTACGTCCTGCAGGGCAACGTTATCCTGTTTGTAAAACTTATGCTCCAGCAGACACTAGCCAAAT
AAAAACTAACTATGGAATACAATGGAATTATCCTGAGCCAGATATTAAGATTTACACAATACGTGGTGGGCGAGAAATTT
GTAAAAATAATCAATGCGCAACCTCTGGTGATCCTGTCGCTGCAGAACTTTATAAAACTGTAAAGAAAGTTTACGAATTT
TTTGAGAACATTTTTAATTTTAGGGGAATTGATGGTCAAGGAAAAATTGCTAAACTTTACATCAATTGGCAAGAACATAA
TGCTCAGTGGAGTTGCTCTAGCGAAACCATTAACGAAGTGTGCCAGTTCAAATTTAACAATACCTTTGCAGTTACAGAGG
AAGTGGTCGCTCATGAATATTTTCACGCCATCATGAACAGAAGGCTCACTTACAAAGGGCAATCAGGTGCCTTGGATGAA
TCTTTAGCGGATGTATTTGGAATTGCTTTTAAACATTGGTCAATAGATAAAGAAATTTTAGAAAATGACAATAATTATCA
GCTTAAACGACAAGAATTAAATGATCATAAAACTCAATTGGTCAAGCAACAAGAGTCAAATGATCGCGGAATTCAAGAGT
TAAATGAGCATAAAAATCAATTGATTAGGCAGCAGGAATCAAATAACCGCGAAATTCAGCAAATTAATCAAGAAGTACTA
AACATCCGTAAAATTCGAAAGACAAATAATCACGAAATTCAAGAGTTAAATAAGCGTGGTTTTCTGACGCTCGCGCAACA
TGAGGCAAATAATCGCGAAATTCAAATTTTAAGGCATAAATCTCAATTGTTAGAGCAACAAAAATCAAATAAACGCGAAG
TTAAGCGAATTGATCGAGAAATGCTAAACATTTCTAAAATTCAAGTTTTAAATGAGCATAAATTGCAACTGCTCAAGCCA
CAAGAGTTAGATAATAGTAAAATTTGGTTAATTAATGGACAAATTTTAGTGAATAGGAAAACATGGTGGGTTGGGAACCT
TCGCGATCTATCTATTCCATCTACTAGGAAGAGAAATTACAAACAAGATCTTGATGAAGATGAACGAGATTTGCCTAGAT
ACGATGAAGAAAATGATTATGGCCATATGCATGATAACAGCTGCATTCCAAGCCATGCTTTTTATTTAGCGTGTCAATCA
GAAGGTAGTAGAACGTGGGGAATGATTGCCCAAATTTGGTTTAGAGCTTCTCAAGATAGAACACTAGAAAGCAATGAAAC
TTTTGAAACATTCGCTCATAGAACTATAGAAGTAGCTAAAGAATTTGAAATGGCTGATATAGTTCAACAAGCCTGGTCAG
GTGTAGGTATTTTATCTACAACCTCTGATAATACTGTTTATGACGAAGAATCCGAAGAAGATCAATTTCAAACTCCTGAA
TATAAGCATGCTGGCTTTTAA

Upstream 100 bases:

>100_bases
TCCAATAATTTAAACCTATTATATACACAAACAGAAAATAAAACATTTAATTGATAAATATTTTTATTGTAGAAAATGCA
TTGTAAATAGGAAAAAAAAT

Downstream 100 bases:

>100_bases
AAAATATTGAGCTTTAATTTTTCTGATTTAAAAAAAAGTCAAAGCTCAATAGCTAAAATTTAATACAGATTACTTATATT
CGAAATTCTGACCAGAATTT

Product: putative metalloproteinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 486; Mature: 486

Protein sequence:

>486_residues
MNNSSLRPAGQRYPVCKTYAPADTSQIKTNYGIQWNYPEPDIKIYTIRGGREICKNNQCATSGDPVAAELYKTVKKVYEF
FENIFNFRGIDGQGKIAKLYINWQEHNAQWSCSSETINEVCQFKFNNTFAVTEEVVAHEYFHAIMNRRLTYKGQSGALDE
SLADVFGIAFKHWSIDKEILENDNNYQLKRQELNDHKTQLVKQQESNDRGIQELNEHKNQLIRQQESNNREIQQINQEVL
NIRKIRKTNNHEIQELNKRGFLTLAQHEANNREIQILRHKSQLLEQQKSNKREVKRIDREMLNISKIQVLNEHKLQLLKP
QELDNSKIWLINGQILVNRKTWWVGNLRDLSIPSTRKRNYKQDLDEDERDLPRYDEENDYGHMHDNSCIPSHAFYLACQS
EGSRTWGMIAQIWFRASQDRTLESNETFETFAHRTIEVAKEFEMADIVQQAWSGVGILSTTSDNTVYDEESEEDQFQTPE
YKHAGF

Sequences:

>Translated_486_residues
MNNSSLRPAGQRYPVCKTYAPADTSQIKTNYGIQWNYPEPDIKIYTIRGGREICKNNQCATSGDPVAAELYKTVKKVYEF
FENIFNFRGIDGQGKIAKLYINWQEHNAQWSCSSETINEVCQFKFNNTFAVTEEVVAHEYFHAIMNRRLTYKGQSGALDE
SLADVFGIAFKHWSIDKEILENDNNYQLKRQELNDHKTQLVKQQESNDRGIQELNEHKNQLIRQQESNNREIQQINQEVL
NIRKIRKTNNHEIQELNKRGFLTLAQHEANNREIQILRHKSQLLEQQKSNKREVKRIDREMLNISKIQVLNEHKLQLLKP
QELDNSKIWLINGQILVNRKTWWVGNLRDLSIPSTRKRNYKQDLDEDERDLPRYDEENDYGHMHDNSCIPSHAFYLACQS
EGSRTWGMIAQIWFRASQDRTLESNETFETFAHRTIEVAKEFEMADIVQQAWSGVGILSTTSDNTVYDEESEEDQFQTPE
YKHAGF
>Mature_486_residues
MNNSSLRPAGQRYPVCKTYAPADTSQIKTNYGIQWNYPEPDIKIYTIRGGREICKNNQCATSGDPVAAELYKTVKKVYEF
FENIFNFRGIDGQGKIAKLYINWQEHNAQWSCSSETINEVCQFKFNNTFAVTEEVVAHEYFHAIMNRRLTYKGQSGALDE
SLADVFGIAFKHWSIDKEILENDNNYQLKRQELNDHKTQLVKQQESNDRGIQELNEHKNQLIRQQESNNREIQQINQEVL
NIRKIRKTNNHEIQELNKRGFLTLAQHEANNREIQILRHKSQLLEQQKSNKREVKRIDREMLNISKIQVLNEHKLQLLKP
QELDNSKIWLINGQILVNRKTWWVGNLRDLSIPSTRKRNYKQDLDEDERDLPRYDEENDYGHMHDNSCIPSHAFYLACQS
EGSRTWGMIAQIWFRASQDRTLESNETFETFAHRTIEVAKEFEMADIVQQAWSGVGILSTTSDNTVYDEESEEDQFQTPE
YKHAGF

Specific function: Unknown

COG id: COG3227

COG function: function code E; Zinc metalloprotease (elastase)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013856
- InterPro:   IPR001570 [H]

Pfam domain/function: PF01447 Peptidase_M4; PF02868 Peptidase_M4_C [H]

EC number: NA

Molecular weight: Translated: 57061; Mature: 57061

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNSSLRPAGQRYPVCKTYAPADTSQIKTNYGIQWNYPEPDIKIYTIRGGREICKNNQCA
CCCCCCCCCCCCCCCEECCCCCCCHHHCCCCCEEECCCCCCEEEEEEECCHHHHCCCCCC
TSGDPVAAELYKTVKKVYEFFENIFNFRGIDGQGKIAKLYINWQEHNAQWSCSSETINEV
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHH
CQFKFNNTFAVTEEVVAHEYFHAIMNRRLTYKGQSGALDESLADVFGIAFKHWSIDKEIL
HHHHCCCEEHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHH
ENDNNYQLKRQELNDHKTQLVKQQESNDRGIQELNEHKNQLIRQQESNNREIQQINQEVL
CCCCCCEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
NIRKIRKTNNHEIQELNKRGFLTLAQHEANNREIQILRHKSQLLEQQKSNKREVKRIDRE
HHHHHHCCCCHHHHHHCCCCCEEEEECCCCCCEEEEHHHHHHHHHHHHCCHHHHHHHHHH
MLNISKIQVLNEHKLQLLKPQELDNSKIWLINGQILVNRKTWWVGNLRDLSIPSTRKRNY
HHHHHHHHHHHHHHHEEECCCCCCCCEEEEEECEEEEECCEEEECCCCCCCCCCHHHHCC
KQDLDEDERDLPRYDEENDYGHMHDNSCIPSHAFYLACQSEGSRTWGMIAQIWFRASQDR
HHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCC
TLESNETFETFAHRTIEVAKEFEMADIVQQAWSGVGILSTTSDNTVYDEESEEDQFQTPE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCC
YKHAGF
CCCCCC
>Mature Secondary Structure
MNNSSLRPAGQRYPVCKTYAPADTSQIKTNYGIQWNYPEPDIKIYTIRGGREICKNNQCA
CCCCCCCCCCCCCCCEECCCCCCCHHHCCCCCEEECCCCCCEEEEEEECCHHHHCCCCCC
TSGDPVAAELYKTVKKVYEFFENIFNFRGIDGQGKIAKLYINWQEHNAQWSCSSETINEV
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHH
CQFKFNNTFAVTEEVVAHEYFHAIMNRRLTYKGQSGALDESLADVFGIAFKHWSIDKEIL
HHHHCCCEEHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHH
ENDNNYQLKRQELNDHKTQLVKQQESNDRGIQELNEHKNQLIRQQESNNREIQQINQEVL
CCCCCCEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
NIRKIRKTNNHEIQELNKRGFLTLAQHEANNREIQILRHKSQLLEQQKSNKREVKRIDRE
HHHHHHCCCCHHHHHHCCCCCEEEEECCCCCCEEEEHHHHHHHHHHHHCCHHHHHHHHHH
MLNISKIQVLNEHKLQLLKPQELDNSKIWLINGQILVNRKTWWVGNLRDLSIPSTRKRNY
HHHHHHHHHHHHHHHEEECCCCCCCCEEEEEECEEEEECCEEEECCCCCCCCCCHHHHCC
KQDLDEDERDLPRYDEENDYGHMHDNSCIPSHAFYLACQSEGSRTWGMIAQIWFRASQDR
HHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCC
TLESNETFETFAHRTIEVAKEFEMADIVQQAWSGVGILSTTSDNTVYDEESEEDQFQTPE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCC
YKHAGF
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1917878 [H]