Click here to switch to the map view.

The map label for this gene is 46447467

Identifier: 46447467

GI number: 46447467

Start: 2189234

End: 2191720

Strand: Direct

Name: 46447467

Synonym: pc1833

Alternate gene names: NA

Gene position: 2189234-2191720 (Clockwise)

Preceding gene: 46447466

Following gene: 46447469

Centisome position: 90.67

GC content: 35.87

Gene sequence:

>2487_bases
ATGGAATTAAAAAAGTACCTTAGTAAAAGAAATTTTAACGAGACAACTGAACCACACGAAAAGACTAAAGAACATTCCTC
TCAAAGCCTTTTGTTCGTCGTGCAAATGCACAACGCCTCTCATTTACATTATGACTTCCGATTAGAATTAGACGGGGTTC
TTAAAAGTTGGGCTATTCCTAAAGGGCCCTCTCTCAATCCCAATGATAAACGTTTAGCCATTCAAGTTGAAGATCATCCT
TATTCTTATCATAATTTTGAGGGAACTATTCCAAAAGGAAATTATGGAGCAGGAGAAGTTATCGTTTGGGATAAAGGTAA
TTATTCAGCTCTAGGAGCAAAGTCCCAAAAAGAGTCCGAACAATTCATAAGACAAGGTTTAAAAAAAGGACATTTAAAAT
TTGTTTTAAATGGGCACAAACTTAAAGGCGAATTTTCTCTTATTCGATTTCAAGGCGATGACAAGCAATGGTTACTCATT
AAGAAAAGTGATGTGTATGCTTCTCAAGTATCCATTCTCGAAAAAAATGAATCTGTTTTGTCTCAACGAATCATTTCTCT
AGATCCAAAAAAAACTGGTAAAAATCCCAAAAAAACGCGTAATTCGATCCTTATTCAAAAAGAAATCCAAAAAACGACCA
TGCCACAAATAATCAAACCCATGCTTGCCACTTTGGTCGATAAACCTTTTGACCATCCCGACTGGCTATTTGAAATTAAG
TGGGATGGATACAGGGCGCTAGCTCAAATTCACAACCAATCCGTTTTTTTATGGTCTCGTAACCATCTTTCATTTAACTC
ACGATTTGATCCGATTGTAAAAGCCTTAAATGAAATGACAGTCGATGCTTATTTAGATGGAGAAATTGTCGTTTTAAATG
AAAATGGACAACCGAGCTTTCAACTCGTTCAAAATTACCTAAAAAATCAAGAAGGATTTTTAGTTTACTACGTGTTCGAT
CTTCTCTACCTAAAAAATAACGATTTACGAGAATTAACCCTTTTACAGCGGAAAGAGCTGCTCAAACAAATTCTACCAAA
AAATTCCCGCATTCGTTTTTGTGAACATTTGATTCAAGAAGGAAAAGCCTTTTTTAAAGTGGCTTCTCAAGCTGGATTTG
AAGGAATTGTAGCTAAAAGAATTGATAGCACCTACCAATCCACGCGCAGTAAAAAATGGCTAAAAATTAAAACTCATCAA
AGACAAGAAGCAATTATTTGTGGCTTCACAACTCCGAGAGGTTCCAGAGAGCATTTCGGATCTCTACTTTTAGGAGTCTA
CAAAGATAATGAATTGCTTTATGTGGGCCATACAGGCAGTGGATTCGATCAAAAATCGTTAACTTATGTGCGTGACCTCT
TAAAACCTCAAGAAACCTGCCCTTTTTCTTTTCCTCCCAAACTCCATCAACCAACCACGTGGGTAAAACCTGAGCTAGTT
TGCGAAATCCAATTTGCTGAATGGACAAAAGAAAAAATCATGAGACAAGCGATTTTTATTGATCTTCGCGAAGATAAAAA
AAAACAAGAAGTTGTGCTAGAAGAGGAAGTAAAAGTCAAAAAAATTTTACAAGAAACTTCTCCCATTTCTAAACAACAAA
AAATAAAACCTAGCATCCATACGGAATTATCTTTTACGCATTTAGATAAAATTTATTGGCCCCAAGAAGGATATACAAAA
GGAGATTTGCTTGAGTACTATCGATCGATATCTCCTTTAATTTTGCCCTATTTAAAAGATCGGCCAGAAACGCTCCATCG
TTATCCAAATGGAATTGGTCAGCCTGGTTTTTATCAAAAAGATCTCCTTCATGCACCCAATTGGGTTCAAATAGAAACCA
TCTCTCACGAAGAAAGAGAGGTACACTATATTATCATCAATGATGAGCAAAGTTTACTCTATGTAATCAATTTAGGATGT
ATTGAATTAAATCCCTTTAATGTTCGAAGGCAATCTTTGCATTATCCAGATTATTTAATCCTTGATTTGGATCCTGAAGG
CATTTCATTTGATTATGTCATTGAAGTCGCTCAAGGAATTCACCACATCTTGGATCCGCTAGACATCCCTCACGTGTGCA
AAACCTCTGGGGCTACCGGACTCCATATTTATATTCCGATGGGGACTCGTTATACTTTTGAAGAAACCACACAATTTGGC
AAATTGATCGCTCACTTAGCTCATGAAAAAATGCCAGATCTCACTTCTTTAGAAAGAAACCCTAAAAATAGACAAAACAA
AGTCTACCTTGATTATTTACAAAACAATTTTGGGCAAACTGTCGTTGCTCCTTATTCCGTTCGTCCCAAACCTGAAGCCC
CTATCTCTACCCCTTTGTCATGGAAAGAAGTGAAAGTTGGTCTTCGCCCAACAGATTTTACTATAAAAAATTGTTTAAAA
AGATTTCAAAAAGTAGGTGATTTATTCAAACCAATTCTTGGTAAAGGAATAAATTTGGAAAAAATTCTCAAACAACTAGA
TGATTAA

Upstream 100 bases:

>100_bases
AACTAAACATTACTTACTCCTGACAAAGATATCAGGGTAATGTTGAAAGAAAATTTAGAGACTCATCAATAAAAGGGGCT
TAAATAATTTTGGAGGTGAT

Downstream 100 bases:

>100_bases
TTAAAGTTCGTTAAATTTGAATCAGCTATTTTAGTCCTTTTTTTGCCACAGGTACAACGTTGCATAGCTGCGCCACGGAC
GCCACACTTGTGATAATTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 828; Mature: 828

Protein sequence:

>828_residues
MELKKYLSKRNFNETTEPHEKTKEHSSQSLLFVVQMHNASHLHYDFRLELDGVLKSWAIPKGPSLNPNDKRLAIQVEDHP
YSYHNFEGTIPKGNYGAGEVIVWDKGNYSALGAKSQKESEQFIRQGLKKGHLKFVLNGHKLKGEFSLIRFQGDDKQWLLI
KKSDVYASQVSILEKNESVLSQRIISLDPKKTGKNPKKTRNSILIQKEIQKTTMPQIIKPMLATLVDKPFDHPDWLFEIK
WDGYRALAQIHNQSVFLWSRNHLSFNSRFDPIVKALNEMTVDAYLDGEIVVLNENGQPSFQLVQNYLKNQEGFLVYYVFD
LLYLKNNDLRELTLLQRKELLKQILPKNSRIRFCEHLIQEGKAFFKVASQAGFEGIVAKRIDSTYQSTRSKKWLKIKTHQ
RQEAIICGFTTPRGSREHFGSLLLGVYKDNELLYVGHTGSGFDQKSLTYVRDLLKPQETCPFSFPPKLHQPTTWVKPELV
CEIQFAEWTKEKIMRQAIFIDLREDKKKQEVVLEEEVKVKKILQETSPISKQQKIKPSIHTELSFTHLDKIYWPQEGYTK
GDLLEYYRSISPLILPYLKDRPETLHRYPNGIGQPGFYQKDLLHAPNWVQIETISHEEREVHYIIINDEQSLLYVINLGC
IELNPFNVRRQSLHYPDYLILDLDPEGISFDYVIEVAQGIHHILDPLDIPHVCKTSGATGLHIYIPMGTRYTFEETTQFG
KLIAHLAHEKMPDLTSLERNPKNRQNKVYLDYLQNNFGQTVVAPYSVRPKPEAPISTPLSWKEVKVGLRPTDFTIKNCLK
RFQKVGDLFKPILGKGINLEKILKQLDD

Sequences:

>Translated_828_residues
MELKKYLSKRNFNETTEPHEKTKEHSSQSLLFVVQMHNASHLHYDFRLELDGVLKSWAIPKGPSLNPNDKRLAIQVEDHP
YSYHNFEGTIPKGNYGAGEVIVWDKGNYSALGAKSQKESEQFIRQGLKKGHLKFVLNGHKLKGEFSLIRFQGDDKQWLLI
KKSDVYASQVSILEKNESVLSQRIISLDPKKTGKNPKKTRNSILIQKEIQKTTMPQIIKPMLATLVDKPFDHPDWLFEIK
WDGYRALAQIHNQSVFLWSRNHLSFNSRFDPIVKALNEMTVDAYLDGEIVVLNENGQPSFQLVQNYLKNQEGFLVYYVFD
LLYLKNNDLRELTLLQRKELLKQILPKNSRIRFCEHLIQEGKAFFKVASQAGFEGIVAKRIDSTYQSTRSKKWLKIKTHQ
RQEAIICGFTTPRGSREHFGSLLLGVYKDNELLYVGHTGSGFDQKSLTYVRDLLKPQETCPFSFPPKLHQPTTWVKPELV
CEIQFAEWTKEKIMRQAIFIDLREDKKKQEVVLEEEVKVKKILQETSPISKQQKIKPSIHTELSFTHLDKIYWPQEGYTK
GDLLEYYRSISPLILPYLKDRPETLHRYPNGIGQPGFYQKDLLHAPNWVQIETISHEEREVHYIIINDEQSLLYVINLGC
IELNPFNVRRQSLHYPDYLILDLDPEGISFDYVIEVAQGIHHILDPLDIPHVCKTSGATGLHIYIPMGTRYTFEETTQFG
KLIAHLAHEKMPDLTSLERNPKNRQNKVYLDYLQNNFGQTVVAPYSVRPKPEAPISTPLSWKEVKVGLRPTDFTIKNCLK
RFQKVGDLFKPILGKGINLEKILKQLDD
>Mature_828_residues
MELKKYLSKRNFNETTEPHEKTKEHSSQSLLFVVQMHNASHLHYDFRLELDGVLKSWAIPKGPSLNPNDKRLAIQVEDHP
YSYHNFEGTIPKGNYGAGEVIVWDKGNYSALGAKSQKESEQFIRQGLKKGHLKFVLNGHKLKGEFSLIRFQGDDKQWLLI
KKSDVYASQVSILEKNESVLSQRIISLDPKKTGKNPKKTRNSILIQKEIQKTTMPQIIKPMLATLVDKPFDHPDWLFEIK
WDGYRALAQIHNQSVFLWSRNHLSFNSRFDPIVKALNEMTVDAYLDGEIVVLNENGQPSFQLVQNYLKNQEGFLVYYVFD
LLYLKNNDLRELTLLQRKELLKQILPKNSRIRFCEHLIQEGKAFFKVASQAGFEGIVAKRIDSTYQSTRSKKWLKIKTHQ
RQEAIICGFTTPRGSREHFGSLLLGVYKDNELLYVGHTGSGFDQKSLTYVRDLLKPQETCPFSFPPKLHQPTTWVKPELV
CEIQFAEWTKEKIMRQAIFIDLREDKKKQEVVLEEEVKVKKILQETSPISKQQKIKPSIHTELSFTHLDKIYWPQEGYTK
GDLLEYYRSISPLILPYLKDRPETLHRYPNGIGQPGFYQKDLLHAPNWVQIETISHEEREVHYIIINDEQSLLYVINLGC
IELNPFNVRRQSLHYPDYLILDLDPEGISFDYVIEVAQGIHHILDPLDIPHVCKTSGATGLHIYIPMGTRYTFEETTQFG
KLIAHLAHEKMPDLTSLERNPKNRQNKVYLDYLQNNFGQTVVAPYSVRPKPEAPISTPLSWKEVKVGLRPTDFTIKNCLK
RFQKVGDLFKPILGKGINLEKILKQLDD

Specific function: Unknown

COG id: COG1793

COG function: function code L; ATP-dependent DNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

Organism=Caenorhabditis elegans, GI71985269, Length=357, Percent_Identity=25.7703081232493, Blast_Score=75, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012309
- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR002755
- InterPro:   IPR014144
- InterPro:   IPR014145
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF04679 DNA_ligase_A_C; PF01068 DNA_ligase_A_M; PF01896 DNA_primase_S [H]

EC number: NA

Molecular weight: Translated: 96030; Mature: 96030

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: PS50160 DNA_LIGASE_A3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELKKYLSKRNFNETTEPHEKTKEHSSQSLLFVVQMHNASHLHYDFRLELDGVLKSWAIP
CCHHHHHHHCCCCCCCCHHHHHHHCCCCEEEEEEEECCCCEEEEEEEEEEHHHHHHCCCC
KGPSLNPNDKRLAIQVEDHPYSYHNFEGTIPKGNYGAGEVIVWDKGNYSALGAKSQKESE
CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHH
QFIRQGLKKGHLKFVLNGHKLKGEFSLIRFQGDDKQWLLIKKSDVYASQVSILEKNESVL
HHHHHHHHCCCEEEEEECCEECCEEEEEEEECCCCEEEEEEECCCCHHHHHHHHCCHHHH
SQRIISLDPKKTGKNPKKTRNSILIQKEIQKTTMPQIIKPMLATLVDKPFDHPDWLFEIK
HHHHHCCCCHHCCCCHHHHHHCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
WDGYRALAQIHNQSVFLWSRNHLSFNSRFDPIVKALNEMTVDAYLDGEIVVLNENGQPSF
ECHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHCEEEEEECCEEEEECCCCCCHH
QLVQNYLKNQEGFLVYYVFDLLYLKNNDLRELTLLQRKELLKQILPKNSRIRFCEHLIQE
HHHHHHHCCCCCEEEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC
GKAFFKVASQAGFEGIVAKRIDSTYQSTRSKKWLKIKTHQRQEAIICGFTTPRGSREHFG
CHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCCHHHHH
SLLLGVYKDNELLYVGHTGSGFDQKSLTYVRDLLKPQETCPFSFPPKLHQPTTWVKPELV
HHEEEEEECCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEE
CEIQFAEWTKEKIMRQAIFIDLREDKKKQEVVLEEEVKVKKILQETSPISKQQKIKPSIH
EEEEHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHH
TELSFTHLDKIYWPQEGYTKGDLLEYYRSISPLILPYLKDRPETLHRYPNGIGQPGFYQK
CEEEHHHHHHEECCCCCCCCHHHHHHHHCCCHHHHHHHCCCCHHHHHCCCCCCCCCCCHH
DLLHAPNWVQIETISHEEREVHYIIINDEQSLLYVINLGCIELNPFNVRRQSLHYPDYLI
HHHCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEEEECEEEECCCCCHHHCCCCCCEEE
LDLDPEGISFDYVIEVAQGIHHILDPLDIPHVCKTSGATGLHIYIPMGTRYTFEETTQFG
EEECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCEEEEEEECCCEECHHHHHHHH
KLIAHLAHEKMPDLTSLERNPKNRQNKVYLDYLQNNFGQTVVAPYSVRPKPEAPISTPLS
HHHHHHHHHCCCCHHHHCCCCCCCCCCEEEEEHHCCCCCEEEECCCCCCCCCCCCCCCCC
WKEVKVGLRPTDFTIKNCLKRFQKVGDLFKPILGKGINLEKILKQLDD
HHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
>Mature Secondary Structure
MELKKYLSKRNFNETTEPHEKTKEHSSQSLLFVVQMHNASHLHYDFRLELDGVLKSWAIP
CCHHHHHHHCCCCCCCCHHHHHHHCCCCEEEEEEEECCCCEEEEEEEEEEHHHHHHCCCC
KGPSLNPNDKRLAIQVEDHPYSYHNFEGTIPKGNYGAGEVIVWDKGNYSALGAKSQKESE
CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHH
QFIRQGLKKGHLKFVLNGHKLKGEFSLIRFQGDDKQWLLIKKSDVYASQVSILEKNESVL
HHHHHHHHCCCEEEEEECCEECCEEEEEEEECCCCEEEEEEECCCCHHHHHHHHCCHHHH
SQRIISLDPKKTGKNPKKTRNSILIQKEIQKTTMPQIIKPMLATLVDKPFDHPDWLFEIK
HHHHHCCCCHHCCCCHHHHHHCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
WDGYRALAQIHNQSVFLWSRNHLSFNSRFDPIVKALNEMTVDAYLDGEIVVLNENGQPSF
ECHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHCEEEEEECCEEEEECCCCCCHH
QLVQNYLKNQEGFLVYYVFDLLYLKNNDLRELTLLQRKELLKQILPKNSRIRFCEHLIQE
HHHHHHHCCCCCEEEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC
GKAFFKVASQAGFEGIVAKRIDSTYQSTRSKKWLKIKTHQRQEAIICGFTTPRGSREHFG
CHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCCHHHHH
SLLLGVYKDNELLYVGHTGSGFDQKSLTYVRDLLKPQETCPFSFPPKLHQPTTWVKPELV
HHEEEEEECCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEE
CEIQFAEWTKEKIMRQAIFIDLREDKKKQEVVLEEEVKVKKILQETSPISKQQKIKPSIH
EEEEHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHH
TELSFTHLDKIYWPQEGYTKGDLLEYYRSISPLILPYLKDRPETLHRYPNGIGQPGFYQK
CEEEHHHHHHEECCCCCCCCHHHHHHHHCCCHHHHHHHCCCCHHHHHCCCCCCCCCCCHH
DLLHAPNWVQIETISHEEREVHYIIINDEQSLLYVINLGCIELNPFNVRRQSLHYPDYLI
HHHCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEEEECEEEECCCCCHHHCCCCCCEEE
LDLDPEGISFDYVIEVAQGIHHILDPLDIPHVCKTSGATGLHIYIPMGTRYTFEETTQFG
EEECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCEEEEEEECCCEECHHHHHHHH
KLIAHLAHEKMPDLTSLERNPKNRQNKVYLDYLQNNFGQTVVAPYSVRPKPEAPISTPLS
HHHHHHHHHCCCCHHHHCCCCCCCCCCEEEEEHHCCCCCEEEECCCCCCCCCCCCCCCCC
WKEVKVGLRPTDFTIKNCLKRFQKVGDLFKPILGKGINLEKILKQLDD
HHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]