| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46447388
Identifier: 46447388
GI number: 46447388
Start: 2097638
End: 2098867
Strand: Direct
Name: 46447388
Synonym: pc1754
Alternate gene names: NA
Gene position: 2097638-2098867 (Clockwise)
Preceding gene: 46447387
Following gene: 46447389
Centisome position: 86.88
GC content: 34.96
Gene sequence:
>1230_bases ATGGCAGCATCGGTAAAAAATATTCTAATAGGAATCTTCGTTCTTCTCGCTCTTGCCATTATTGTCTTCCTACTTCTTTT TCTTCATCCTTCTGTCGGAGATAATGCAAAAACATTACGAGTTCGCTTTACCAATATTGATAAAATCAATGTTGGCTCGC GTGTTACATTTGCCGGTAAACCTGTCGGAGAAGTTGTTTCAATTGAAGAGATACCTGATGCAAGAATCGGTCGAATCAAC CATCAAGGTGACGTTTATATCTATCAACTAACTTTGAAAGTGGATTCTAGCGTGAGTGTCTATAATTCAGATGAAATTTC TATTCGCACTTCCGGTTTATTGGGTGAAAAAAATATTGAAATCGATCCTCAGCCCCTTAAATCAGGTGGGACACTCATTG ATGTCGAAAACCAAATTCTCTATGCTTCTCCTTCTGGATCTGTTGAAGAAACATTAAAACAATTTGATCAAATTTCCACG CAACTCAAGGTCGTATTGGAAGACTTCCATGACACTTTTACAATTTTGAAAAATGAAAAAGTCATTGAAGGAATTGCTCA AACAATAAAAAATATAGGGGAAATTACTCAGGTTGTAAATCAACCAGAAAAATTAAGCCGTATGCTTACTAACTTTGTTA ATTTATCTGAACGAACCCACCAATCGTGGAAGACGTTAGATGCAGCCTGTCAAAATTTTTATCAACTCAGTGAGAAAGCT AATATTTCCTGGTTGTCTGTTGAAAATACTTTAAAAGAATTCAATTTAGCGTCAGTCAATTTGCAAAAAATGACGAATCA AACACAACTTTTAGTTGCAAATATGGCGCAAGGAAAAGGAACATTAGGTAAGCTATTCGTAGCAGATGATTTATATTTAC GAGTTAAATCTATTTTAAATAAAGGTGAGAACATTTTTAGCGATATTAAGCAGTATGGAATTCTATTTCAACACAACAAA CGGTGGCAACGTCTTCAAGCGCAACGAATGAAATTATTACATAAATTATCTGATTCAAACAAATTTGCTAATTATTTCAA TGACGAAATCAATCAAATTTCATCTTCTCTTTCTAGTATTTCTATGGTATTAAACGAAGCAGAGTGTTATCCCTATTCAT TATTAAATACCCCGGAATTCACCTGCCGGTTTGCGGACCTTATTAAGCGTGTGGGGGAAATGGAAAACGCATTAAAGATG TATAATGAACAAGTCATCGACCAAGAGTAG
Upstream 100 bases:
>100_bases TAAAAATCGATGATCCGCTCCTTAATGATTTTTTCAATAATGCGTTCATTGATAAAAAAATTTTTTATAAGCCAAAACAG TCGGGAGATTCATAATTACT
Downstream 100 bases:
>100_bases TTTTTAAGGAGTTAATCGGATGGAAAACATGCCTTATTCTCAAATCCAGAAAGGAACTTTTTTAATTGCCACTCCTGATA TTGATTCAGGTTTTTTCTTT
Product: hypothetical protein
Products: NA
Alternate protein names: Mammalian Cell Entry Related Domain Protein
Number of amino acids: Translated: 409; Mature: 408
Protein sequence:
>409_residues MAASVKNILIGIFVLLALAIIVFLLLFLHPSVGDNAKTLRVRFTNIDKINVGSRVTFAGKPVGEVVSIEEIPDARIGRIN HQGDVYIYQLTLKVDSSVSVYNSDEISIRTSGLLGEKNIEIDPQPLKSGGTLIDVENQILYASPSGSVEETLKQFDQIST QLKVVLEDFHDTFTILKNEKVIEGIAQTIKNIGEITQVVNQPEKLSRMLTNFVNLSERTHQSWKTLDAACQNFYQLSEKA NISWLSVENTLKEFNLASVNLQKMTNQTQLLVANMAQGKGTLGKLFVADDLYLRVKSILNKGENIFSDIKQYGILFQHNK RWQRLQAQRMKLLHKLSDSNKFANYFNDEINQISSSLSSISMVLNEAECYPYSLLNTPEFTCRFADLIKRVGEMENALKM YNEQVIDQE
Sequences:
>Translated_409_residues MAASVKNILIGIFVLLALAIIVFLLLFLHPSVGDNAKTLRVRFTNIDKINVGSRVTFAGKPVGEVVSIEEIPDARIGRIN HQGDVYIYQLTLKVDSSVSVYNSDEISIRTSGLLGEKNIEIDPQPLKSGGTLIDVENQILYASPSGSVEETLKQFDQIST QLKVVLEDFHDTFTILKNEKVIEGIAQTIKNIGEITQVVNQPEKLSRMLTNFVNLSERTHQSWKTLDAACQNFYQLSEKA NISWLSVENTLKEFNLASVNLQKMTNQTQLLVANMAQGKGTLGKLFVADDLYLRVKSILNKGENIFSDIKQYGILFQHNK RWQRLQAQRMKLLHKLSDSNKFANYFNDEINQISSSLSSISMVLNEAECYPYSLLNTPEFTCRFADLIKRVGEMENALKM YNEQVIDQE >Mature_408_residues AASVKNILIGIFVLLALAIIVFLLLFLHPSVGDNAKTLRVRFTNIDKINVGSRVTFAGKPVGEVVSIEEIPDARIGRINH QGDVYIYQLTLKVDSSVSVYNSDEISIRTSGLLGEKNIEIDPQPLKSGGTLIDVENQILYASPSGSVEETLKQFDQISTQ LKVVLEDFHDTFTILKNEKVIEGIAQTIKNIGEITQVVNQPEKLSRMLTNFVNLSERTHQSWKTLDAACQNFYQLSEKAN ISWLSVENTLKEFNLASVNLQKMTNQTQLLVANMAQGKGTLGKLFVADDLYLRVKSILNKGENIFSDIKQYGILFQHNKR WQRLQAQRMKLLHKLSDSNKFANYFNDEINQISSSLSSISMVLNEAECYPYSLLNTPEFTCRFADLIKRVGEMENALKMY NEQVIDQE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46150; Mature: 46018
Theoretical pI: Translated: 6.27; Mature: 6.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAASVKNILIGIFVLLALAIIVFLLLFLHPSVGDNAKTLRVRFTNIDKINVGSRVTFAGK CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEECCCCEEEECCC PVGEVVSIEEIPDARIGRINHQGDVYIYQLTLKVDSSVSVYNSDEISIRTSGLLGEKNIE CCCCEEEHHHCCCCHHCCCCCCCCEEEEEEEEEECCCEEEECCCCEEEEECCCCCCCCCC IDPQPLKSGGTLIDVENQILYASPSGSVEETLKQFDQISTQLKVVLEDFHDTFTILKNEK CCCCCCCCCCCEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH VIEGIAQTIKNIGEITQVVNQPEKLSRMLTNFVNLSERTHQSWKTLDAACQNFYQLSEKA HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NISWLSVENTLKEFNLASVNLQKMTNQTQLLVANMAQGKGTLGKLFVADDLYLRVKSILN CCEEEEHHHHHHHCCCHHHHHHHHCCCHHHHEEHHHCCCCCCEEEEEHHHHHHHHHHHHC KGENIFSDIKQYGILFQHNKRWQRLQAQRMKLLHKLSDSNKFANYFNDEINQISSSLSSI CCHHHHHHHHHHCEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH SMVLNEAECYPYSLLNTPEFTCRFADLIKRVGEMENALKMYNEQVIDQE HHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure AASVKNILIGIFVLLALAIIVFLLLFLHPSVGDNAKTLRVRFTNIDKINVGSRVTFAGK CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEECCCCEEEECCC PVGEVVSIEEIPDARIGRINHQGDVYIYQLTLKVDSSVSVYNSDEISIRTSGLLGEKNIE CCCCEEEHHHCCCCHHCCCCCCCCEEEEEEEEEECCCEEEECCCCEEEEECCCCCCCCCC IDPQPLKSGGTLIDVENQILYASPSGSVEETLKQFDQISTQLKVVLEDFHDTFTILKNEK CCCCCCCCCCCEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH VIEGIAQTIKNIGEITQVVNQPEKLSRMLTNFVNLSERTHQSWKTLDAACQNFYQLSEKA HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NISWLSVENTLKEFNLASVNLQKMTNQTQLLVANMAQGKGTLGKLFVADDLYLRVKSILN CCEEEEHHHHHHHCCCHHHHHHHHCCCHHHHEEHHHCCCCCCEEEEEHHHHHHHHHHHHC KGENIFSDIKQYGILFQHNKRWQRLQAQRMKLLHKLSDSNKFANYFNDEINQISSSLSSI CCHHHHHHHHHHCEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH SMVLNEAECYPYSLLNTPEFTCRFADLIKRVGEMENALKMYNEQVIDQE HHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA