BacMap

Definition	Candidatus Protochlamydia amoebophila UWE25, complete genome.
Accession	NC_005861
Length	2,414,465

Click here to switch to the map view.

The map label for this gene is ydfG [H]

Identifier: 46447212

GI number: 46447212

Start: 1894313

End: 1895104

Strand: Direct

Name: ydfG [H]

Synonym: pc1578

Alternate gene names: 46447212

Gene position: 1894313-1895104 (Clockwise)

Preceding gene: 46447211

Following gene: 46447215

Centisome position: 78.46

GC content: 37.37

Gene sequence:

>792_bases
TTGCAAGAAAGAGCTTTAATGGGACAATTATTCATCAATTCTACAGTTATGATTACTGGGGCAAGCTCTGGCTTTGGAGC
CGAAACGGCCCGATTATTTGCTAAAGAAGGGGCTCGTTTGATTTTGCTCGCAAGGCGAAAAGATCGATTAGTAGAGTTGC
AAAATGAGTTAAAAGAAAAATTTCAAACAAAAAGTTACTGTATTACTGCTGATATTGGAAATTTTGAGCTTTTAGAAGAA
CAAATATCCGATCTTGACAAAAATTTTGAACGACCAAACATTTTGATTAATAATGCAGGAATGGTTAAGGGATTGGATAA
ACTGTGGGAAGTTAAGCCTCAAGATTGGAACACGATGATTGATACAAATATCAAAGGTGTTCTTAATGCAACAAGACTCA
TTGTCCCATCCATGTTAAAAGCTGATCAAGGACATATTATTAATGTAGGAAGTACCTCTGGTCACGGAATTTATTCTGGA
GGTGGGGTTTATTGTGCTACAAAGTTTGCTTTAAGAGCTTTAACAGATACTCTCAGGACAGAACTTATTTCGACTTCTAT
TCGCGTATCCCTTATTTCCCCAGGAATAGCAAAGACAGAATTTAGTCTGGTCCGTTTTGCAGGAGATAAGCAAAAAGCTG
ATAAAGTTTATGAAGGATTAGAAGCTTTAAATGCGACAGATATTGCCGAAGCAATTTTGTTCATTGCATCGCGTCCTGCC
CATGTTAACATTGCTGATATGGTGATCTATCCAAAAAGTCAAGCTTCTTCTTCGATCATCCATCGAGCATAA

Upstream 100 bases:

>100_bases
TATGACCGCATTAGAAAATACTTAAGTCCTGAAATGAGGGCTTATTGGGATCGTTTAGTTAAAAATGGGGGGCGTTAAGC
TTCCTCCTTACCTAAGAAAA

Downstream 100 bases:

>100_bases
AACAAGGAAAAGTTTTTTTAATGAAGTAAACCTTTGATCTGATATTACTTATTGAAAGTGAATCAGATATAAGAAGGTTC
AAATTATTAAATTTCGCCAA

Product: putative blue fluorescent protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MQERALMGQLFINSTVMITGASSGFGAETARLFAKEGARLILLARRKDRLVELQNELKEKFQTKSYCITADIGNFELLEE
QISDLDKNFERPNILINNAGMVKGLDKLWEVKPQDWNTMIDTNIKGVLNATRLIVPSMLKADQGHIINVGSTSGHGIYSG
GGVYCATKFALRALTDTLRTELISTSIRVSLISPGIAKTEFSLVRFAGDKQKADKVYEGLEALNATDIAEAILFIASRPA
HVNIADMVIYPKSQASSSIIHRA

Sequences:

>Translated_263_residues
MQERALMGQLFINSTVMITGASSGFGAETARLFAKEGARLILLARRKDRLVELQNELKEKFQTKSYCITADIGNFELLEE
QISDLDKNFERPNILINNAGMVKGLDKLWEVKPQDWNTMIDTNIKGVLNATRLIVPSMLKADQGHIINVGSTSGHGIYSG
GGVYCATKFALRALTDTLRTELISTSIRVSLISPGIAKTEFSLVRFAGDKQKADKVYEGLEALNATDIAEAILFIASRPA
HVNIADMVIYPKSQASSSIIHRA
>Mature_263_residues
MQERALMGQLFINSTVMITGASSGFGAETARLFAKEGARLILLARRKDRLVELQNELKEKFQTKSYCITADIGNFELLEE
QISDLDKNFERPNILINNAGMVKGLDKLWEVKPQDWNTMIDTNIKGVLNATRLIVPSMLKADQGHIINVGSTSGHGIYSG
GGVYCATKFALRALTDTLRTELISTSIRVSLISPGIAKTEFSLVRFAGDKQKADKVYEGLEALNATDIAEAILFIASRPA
HVNIADMVIYPKSQASSSIIHRA

Specific function: Catalyzes the NADP-dependent oxidation of L-allo- threonine and L-serine [H]

COG id: COG4221

COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI109715829, Length=247, Percent_Identity=34.412955465587, Blast_Score=135, Evalue=3e-32,
Organism=Homo sapiens, GI20149619, Length=208, Percent_Identity=34.1346153846154, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI32483357, Length=243, Percent_Identity=26.3374485596708, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI7705855, Length=192, Percent_Identity=29.6875, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI210032110, Length=191, Percent_Identity=31.413612565445, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI150247226, Length=200, Percent_Identity=29, Blast_Score=81, Evalue=7e-16,
Organism=Homo sapiens, GI40548397, Length=198, Percent_Identity=30.3030303030303, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI214010158, Length=198, Percent_Identity=30.3030303030303, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI214010156, Length=198, Percent_Identity=30.3030303030303, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI22758144, Length=198, Percent_Identity=30.3030303030303, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI40807363, Length=222, Percent_Identity=29.2792792792793, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI142976729, Length=189, Percent_Identity=30.6878306878307, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI7706318, Length=209, Percent_Identity=33.9712918660287, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI40254992, Length=240, Percent_Identity=26.6666666666667, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI5031737, Length=238, Percent_Identity=27.3109243697479, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI19743808, Length=200, Percent_Identity=26.5, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI7705925, Length=234, Percent_Identity=25.2136752136752, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI33667109, Length=195, Percent_Identity=27.1794871794872, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI4503817, Length=184, Percent_Identity=27.7173913043478, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI22507405, Length=192, Percent_Identity=28.125, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI7657478, Length=192, Percent_Identity=29.6875, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI31542939, Length=197, Percent_Identity=26.9035532994924, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI157739938, Length=202, Percent_Identity=28.2178217821782, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI119392083, Length=211, Percent_Identity=28.9099526066351, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI50726952, Length=192, Percent_Identity=26.5625, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI19923817, Length=218, Percent_Identity=24.3119266055046, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1787820, Length=249, Percent_Identity=40.9638554216867, Blast_Score=201, Evalue=3e-53,
Organism=Escherichia coli, GI87082100, Length=197, Percent_Identity=33.502538071066, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787335, Length=244, Percent_Identity=29.5081967213115, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787526, Length=209, Percent_Identity=27.7511961722488, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87082160, Length=197, Percent_Identity=30.4568527918782, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1786812, Length=253, Percent_Identity=23.3201581027668, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1786701, Length=197, Percent_Identity=28.9340101522843, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI2367175, Length=231, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790717, Length=198, Percent_Identity=25.7575757575758, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788459, Length=188, Percent_Identity=25, Blast_Score=61, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17551412, Length=246, Percent_Identity=32.1138211382114, Blast_Score=94, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17560676, Length=234, Percent_Identity=25.2136752136752, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17561402, Length=244, Percent_Identity=28.6885245901639, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17560332, Length=251, Percent_Identity=30.6772908366534, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17544670, Length=255, Percent_Identity=29.8039215686275, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17562904, Length=251, Percent_Identity=30.2788844621514, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI71994600, Length=233, Percent_Identity=28.3261802575107, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17559104, Length=248, Percent_Identity=27.8225806451613, Blast_Score=81, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17562908, Length=201, Percent_Identity=30.8457711442786, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17538480, Length=248, Percent_Identity=29.4354838709677, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17562910, Length=202, Percent_Identity=30.6930693069307, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17564282, Length=228, Percent_Identity=28.5087719298246, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17567345, Length=211, Percent_Identity=28.9099526066351, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17565030, Length=266, Percent_Identity=28.5714285714286, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI193203117, Length=182, Percent_Identity=28.5714285714286, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI71994604, Length=234, Percent_Identity=27.7777777777778, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI193203115, Length=183, Percent_Identity=28.9617486338798, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17508895, Length=190, Percent_Identity=30.5263157894737, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17560150, Length=244, Percent_Identity=28.6885245901639, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17560220, Length=247, Percent_Identity=29.1497975708502, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17562906, Length=197, Percent_Identity=28.9340101522843, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI115534694, Length=231, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17538486, Length=220, Percent_Identity=28.6363636363636, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17562990, Length=246, Percent_Identity=28.4552845528455, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71997402, Length=195, Percent_Identity=34.3589743589744, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI72000259, Length=246, Percent_Identity=27.6422764227642, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI115534660, Length=196, Percent_Identity=27.0408163265306, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17557780, Length=246, Percent_Identity=26.0162601626016, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17563726, Length=247, Percent_Identity=29.1497975708502, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193204405, Length=248, Percent_Identity=28.2258064516129, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17531453, Length=253, Percent_Identity=27.6679841897233, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI212646214, Length=205, Percent_Identity=27.8048780487805, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI25147288, Length=200, Percent_Identity=27, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17570069, Length=193, Percent_Identity=31.0880829015544, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17557668, Length=197, Percent_Identity=26.3959390862944, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI25152911, Length=208, Percent_Identity=29.8076923076923, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17536025, Length=265, Percent_Identity=24.9056603773585, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=252, Percent_Identity=41.2698412698413, Blast_Score=191, Evalue=1e-49,
Organism=Saccharomyces cerevisiae, GI6319635, Length=203, Percent_Identity=28.0788177339901, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI116007236, Length=249, Percent_Identity=31.7269076305221, Blast_Score=122, Evalue=2e-28,
Organism=Drosophila melanogaster, GI281364494, Length=248, Percent_Identity=29.0322580645161, Blast_Score=111, Evalue=5e-25,
Organism=Drosophila melanogaster, GI28571387, Length=253, Percent_Identity=32.8063241106719, Blast_Score=111, Evalue=5e-25,
Organism=Drosophila melanogaster, GI24641232, Length=251, Percent_Identity=29.4820717131474, Blast_Score=111, Evalue=5e-25,
Organism=Drosophila melanogaster, GI24641388, Length=250, Percent_Identity=30, Blast_Score=107, Evalue=6e-24,
Organism=Drosophila melanogaster, GI24648693, Length=249, Percent_Identity=27.710843373494, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI21355889, Length=249, Percent_Identity=27.710843373494, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI21358495, Length=223, Percent_Identity=31.8385650224215, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI116007234, Length=252, Percent_Identity=30.1587301587302, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI23397609, Length=235, Percent_Identity=31.063829787234, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24663911, Length=254, Percent_Identity=27.9527559055118, Blast_Score=98, Evalue=7e-21,
Organism=Drosophila melanogaster, GI28574402, Length=234, Percent_Identity=27.7777777777778, Blast_Score=94, Evalue=9e-20,
Organism=Drosophila melanogaster, GI24584744, Length=234, Percent_Identity=27.7777777777778, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI21357041, Length=238, Percent_Identity=28.9915966386555, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24644339, Length=237, Percent_Identity=28.2700421940928, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI161076933, Length=232, Percent_Identity=27.1551724137931, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24584748, Length=232, Percent_Identity=27.1551724137931, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24648944, Length=246, Percent_Identity=30.0813008130081, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI116007238, Length=189, Percent_Identity=30.6878306878307, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI28571526, Length=237, Percent_Identity=25.7383966244726, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI21356301, Length=192, Percent_Identity=32.8125, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24643142, Length=191, Percent_Identity=30.8900523560209, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24639444, Length=231, Percent_Identity=27.7056277056277, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24580925, Length=204, Percent_Identity=29.9019607843137, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24640442, Length=196, Percent_Identity=27.5510204081633, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI116007232, Length=192, Percent_Identity=30.2083333333333, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI21355319, Length=190, Percent_Identity=25.7894736842105, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24584752, Length=187, Percent_Identity=29.4117647058824, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI18859837, Length=192, Percent_Identity=30.2083333333333, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI21355631, Length=166, Percent_Identity=23.4939759036145, Blast_Score=64, Evalue=1e-10,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 28876; Mature: 28876

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQERALMGQLFINSTVMITGASSGFGAETARLFAKEGARLILLARRKDRLVELQNELKEK
CCCHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH
FQTKSYCITADIGNFELLEEQISDLDKNFERPNILINNAGMVKGLDKLWEVKPQDWNTMI
HCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCCCCCCEEE
DTNIKGVLNATRLIVPSMLKADQGHIINVGSTSGHGIYSGGGVYCATKFALRALTDTLRT
CCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHH
ELISTSIRVSLISPGIAKTEFSLVRFAGDKQKADKVYEGLEALNATDIAEAILFIASRPA
HHHHHHEEEEEECCCCCHHHHHHHEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
HVNIADMVIYPKSQASSSIIHRA
CCEEEEEEEECCCCCCCHHHCCC
>Mature Secondary Structure
MQERALMGQLFINSTVMITGASSGFGAETARLFAKEGARLILLARRKDRLVELQNELKEK
CCCHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH
FQTKSYCITADIGNFELLEEQISDLDKNFERPNILINNAGMVKGLDKLWEVKPQDWNTMI
HCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCCCCCCEEE
DTNIKGVLNATRLIVPSMLKADQGHIINVGSTSGHGIYSGGGVYCATKFALRALTDTLRT
CCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHH
ELISTSIRVSLISPGIAKTEFSLVRFAGDKQKADKVYEGLEALNATDIAEAILFIASRPA
HHHHHHEEEEEECCCCCHHHHHHHEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
HVNIADMVIYPKSQASSSIIHRA
CCEEEEEEEECCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]