| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46447049
Identifier: 46447049
GI number: 46447049
Start: 1689469
End: 1690965
Strand: Direct
Name: 46447049
Synonym: pc1415
Alternate gene names: NA
Gene position: 1689469-1690965 (Clockwise)
Preceding gene: 46447046
Following gene: 46447050
Centisome position: 69.97
GC content: 33.53
Gene sequence:
>1497_bases ATGCAACAAAACAGCGTGAAAAGCTTTGATAATTTTAATGTGAAAAGTCTTGATAGTTGGCTAAACACCATAGAGCAATT ACCTTTAAATGACAAAAAATTACTGCCTGAATTAAGAGCTATCTTAAAAATTTTTGATGATTGGTTAAATGATAAAAATG TAATTCAGTTAACACGAATTTTAAAAAAACATGGTTTAGAGCATAAAAATTCTAAGCTTGATGAAGTGATAAAAGAAATT AGAGATAAAATATTTAATTACACAACTCCAAAGGGTAGGGGCCTAATACACGAATGCGCATATGCTGGAAATGTTGAAAC GATCCAAGCACTTACTAATTTAGTTTCTACTAATTCGATTAATAATTTACTTGAATCAAAGAGCAAATCAGGTGAGACTG CTCTTGGTTATGCTAAACGTAAAGGACATCAAGGCGTAATTGCTTACTTGAAGTTGCCTGAGGCTTTACTTAAGAAAGAA ATTGTTTGTAAAAAAGGCGCAGATCCCAAACTTGAAGGGTTGCTTTTAAGTATGCAAGCATTAAATTTAAGTATTGAGCA TAGCTTTGCTTATAAAAATGTTACTTATCACTTTACAAACTGTTTCCTTTTGGAAGAATCCGTATTTGGAAAAAGACCTC TTATTTTTGCTTTTATAGAAAAATCAGAAAAGATTTATCCCCGTTTATTTTGGCTTAGCCAATCACAATCTATGTGGAGG AGAACTGATAAAATATTTAAAGATTGGATCGGAAAATCGAATAAGGGTGAAGAATGGCTAGCTCTTCCTATTTTAATCAA TCTAAAAATTTTTAAAATTTTACAAAAAGGTTTTGCTCCGATTTCAAACAAAACGTATGTAGAAGAATTTCTCAAGAGAG TTGTGGCATGGAGTGATAAAGGTGTTCAACAACCTGGCTGGTTCTTAAATCCAGCAGGATTTCTTACCAATGGAAATGAG AAAACCGCTGAAGGAGCTGAAAGTACAGATGATACATCTTCAAGTAGTGCTGACGTTCCAAAAATGCCAGAAACCCATAG AGGCAATATTCTTTTAGGCCCTGAGCATTTACCAGAAGATCCCCATTTAAATGATTTTATAAACAAACAACAAAGGCCTG ATTTTTCTAAGAGCGTAGAATCGCAAATTATAGATAGCCGCCTTTATGGCCGTTTAAAAGCTAATGTTTTTTTATCATGT GATAGAGCAATTCGGTTTTTATTCCTACAAAATCATTTAAACCATGTATTTCTAGCGGGAGCCGAGTTAGTGGAAGAGAA TGTTACAATACGAGGACTTAAAAAAAACTGGGTACAGCTAGGCTCTTTATCGCTTCCACTTCTAGAATATCGTGATCAAT TTCATGACAAATTTATAAGTGATTCAGAGTGGGATAAAATTTCACAAGGAAAACAGTTGACTTATGTCCAAACATGGAAT TACTTGAGAGAGATGCCGTGCATTCAAGAATATTATAGCATTCCTCCAAAGATATAG
Upstream 100 bases:
>100_bases GTTATTTTTTAATGTCCTATTAATTGTTAAAATTGTCAATAAAGTGATTCTTATATTGAGATAAGAAGTTGAAAAATATA AAAATAAATTTAGGAAATTT
Downstream 100 bases:
>100_bases CATGCAGTCCTCTTAGTATATTCAAAAAAGAAACTTTTTGTTTAAATTAGCTACCGCAATTTTGCTTTAATTGCGGTTGG CTTGTCTCTTGCAAGTAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 498; Mature: 498
Protein sequence:
>498_residues MQQNSVKSFDNFNVKSLDSWLNTIEQLPLNDKKLLPELRAILKIFDDWLNDKNVIQLTRILKKHGLEHKNSKLDEVIKEI RDKIFNYTTPKGRGLIHECAYAGNVETIQALTNLVSTNSINNLLESKSKSGETALGYAKRKGHQGVIAYLKLPEALLKKE IVCKKGADPKLEGLLLSMQALNLSIEHSFAYKNVTYHFTNCFLLEESVFGKRPLIFAFIEKSEKIYPRLFWLSQSQSMWR RTDKIFKDWIGKSNKGEEWLALPILINLKIFKILQKGFAPISNKTYVEEFLKRVVAWSDKGVQQPGWFLNPAGFLTNGNE KTAEGAESTDDTSSSSADVPKMPETHRGNILLGPEHLPEDPHLNDFINKQQRPDFSKSVESQIIDSRLYGRLKANVFLSC DRAIRFLFLQNHLNHVFLAGAELVEENVTIRGLKKNWVQLGSLSLPLLEYRDQFHDKFISDSEWDKISQGKQLTYVQTWN YLREMPCIQEYYSIPPKI
Sequences:
>Translated_498_residues MQQNSVKSFDNFNVKSLDSWLNTIEQLPLNDKKLLPELRAILKIFDDWLNDKNVIQLTRILKKHGLEHKNSKLDEVIKEI RDKIFNYTTPKGRGLIHECAYAGNVETIQALTNLVSTNSINNLLESKSKSGETALGYAKRKGHQGVIAYLKLPEALLKKE IVCKKGADPKLEGLLLSMQALNLSIEHSFAYKNVTYHFTNCFLLEESVFGKRPLIFAFIEKSEKIYPRLFWLSQSQSMWR RTDKIFKDWIGKSNKGEEWLALPILINLKIFKILQKGFAPISNKTYVEEFLKRVVAWSDKGVQQPGWFLNPAGFLTNGNE KTAEGAESTDDTSSSSADVPKMPETHRGNILLGPEHLPEDPHLNDFINKQQRPDFSKSVESQIIDSRLYGRLKANVFLSC DRAIRFLFLQNHLNHVFLAGAELVEENVTIRGLKKNWVQLGSLSLPLLEYRDQFHDKFISDSEWDKISQGKQLTYVQTWN YLREMPCIQEYYSIPPKI >Mature_498_residues MQQNSVKSFDNFNVKSLDSWLNTIEQLPLNDKKLLPELRAILKIFDDWLNDKNVIQLTRILKKHGLEHKNSKLDEVIKEI RDKIFNYTTPKGRGLIHECAYAGNVETIQALTNLVSTNSINNLLESKSKSGETALGYAKRKGHQGVIAYLKLPEALLKKE IVCKKGADPKLEGLLLSMQALNLSIEHSFAYKNVTYHFTNCFLLEESVFGKRPLIFAFIEKSEKIYPRLFWLSQSQSMWR RTDKIFKDWIGKSNKGEEWLALPILINLKIFKILQKGFAPISNKTYVEEFLKRVVAWSDKGVQQPGWFLNPAGFLTNGNE KTAEGAESTDDTSSSSADVPKMPETHRGNILLGPEHLPEDPHLNDFINKQQRPDFSKSVESQIIDSRLYGRLKANVFLSC DRAIRFLFLQNHLNHVFLAGAELVEENVTIRGLKKNWVQLGSLSLPLLEYRDQFHDKFISDSEWDKISQGKQLTYVQTWN YLREMPCIQEYYSIPPKI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57278; Mature: 57278
Theoretical pI: Translated: 9.24; Mature: 9.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQQNSVKSFDNFNVKSLDSWLNTIEQLPLNDKKLLPELRAILKIFDDWLNDKNVIQLTRI CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH LKKHGLEHKNSKLDEVIKEIRDKIFNYTTPKGRGLIHECAYAGNVETIQALTNLVSTNSI HHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHH NNLLESKSKSGETALGYAKRKGHQGVIAYLKLPEALLKKEIVCKKGADPKLEGLLLSMQA HHHHHHCCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCCHHHHHHHHHH LNLSIEHSFAYKNVTYHFTNCFLLEESVFGKRPLIFAFIEKSEKIYPRLFWLSQSQSMWR HCEEEECCCCCCCEEEEEEEEEEEEHHHCCCCCEEEEEECCCCCCCCEEEEECCCHHHHH RTDKIFKDWIGKSNKGEEWLALPILINLKIFKILQKGFAPISNKTYVEEFLKRVVAWSDK HHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC GVQQPGWFLNPAGFLTNGNEKTAEGAESTDDTSSSSADVPKMPETHRGNILLGPEHLPED CCCCCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECHHCCCCC PHLNDFINKQQRPDFSKSVESQIIDSRLYGRLKANVFLSCDRAIRFLFLQNHLNHVFLAG CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHEEHHH AELVEENVTIRGLKKNWVQLGSLSLPLLEYRDQFHDKFISDSEWDKISQGKQLTYVQTWN HHHHHCCCEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEHHHHH YLREMPCIQEYYSIPPKI HHHHCHHHHHHHCCCCCC >Mature Secondary Structure MQQNSVKSFDNFNVKSLDSWLNTIEQLPLNDKKLLPELRAILKIFDDWLNDKNVIQLTRI CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH LKKHGLEHKNSKLDEVIKEIRDKIFNYTTPKGRGLIHECAYAGNVETIQALTNLVSTNSI HHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHH NNLLESKSKSGETALGYAKRKGHQGVIAYLKLPEALLKKEIVCKKGADPKLEGLLLSMQA HHHHHHCCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCCHHHHHHHHHH LNLSIEHSFAYKNVTYHFTNCFLLEESVFGKRPLIFAFIEKSEKIYPRLFWLSQSQSMWR HCEEEECCCCCCCEEEEEEEEEEEEHHHCCCCCEEEEEECCCCCCCCEEEEECCCHHHHH RTDKIFKDWIGKSNKGEEWLALPILINLKIFKILQKGFAPISNKTYVEEFLKRVVAWSDK HHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC GVQQPGWFLNPAGFLTNGNEKTAEGAESTDDTSSSSADVPKMPETHRGNILLGPEHLPED CCCCCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECHHCCCCC PHLNDFINKQQRPDFSKSVESQIIDSRLYGRLKANVFLSCDRAIRFLFLQNHLNHVFLAG CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHEEHHH AELVEENVTIRGLKKNWVQLGSLSLPLLEYRDQFHDKFISDSEWDKISQGKQLTYVQTWN HHHHHCCCEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEHHHHH YLREMPCIQEYYSIPPKI HHHHCHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA