Definition Candidatus Protochlamydia amoebophila UWE25, complete genome.
Accession NC_005861
Length 2,414,465

Click here to switch to the map view.

The map label for this gene is 46446956

Identifier: 46446956

GI number: 46446956

Start: 1578026

End: 1578358

Strand: Direct

Name: 46446956

Synonym: pc1322

Alternate gene names: NA

Gene position: 1578026-1578358 (Clockwise)

Preceding gene: 46446955

Following gene: 46446957

Centisome position: 65.36

GC content: 31.83

Gene sequence:

>333_bases
TTGGAGTTTTATATGAGTTTAGAACAAAAAATGGAAGAAAAATTTCACTCAACTCAAGTAAAAATGAAAGAAATTTCCGT
AGGCATGGGAAAATTAGAATCGGAATACCAAAAGCTTTTGAAAGATTTGGGGCTTTCTAGTGAAGAAGTTCATGAATTTG
CTTCTAATGCATCCAATTATTCCGCTCCTATATGGGAACAACTGCAAAATGAAAAAAAACAATTAGATGAAAAATTAAAT
TTAAATCTAAACAACGTAAGAGACCCTTTAAAAGTAAAAAAAGCTTTTTCGGATCACGCCACTATCCAATCTCACTGGAT
TTACGTCCGTTAA

Upstream 100 bases:

>100_bases
AATTTATTTCTTACACTTAGAGAAAATATACAAAATTGAAATTTTGAAAATTTATTGAAATTAATTCAAACAAATATTAA
AATATTAATTGAGTATTTAT

Downstream 100 bases:

>100_bases
TTTTCAAAACTTAAATCATAAAATTTGCTAATCTAATATTTATGTGCATATCCATTCAACCATTCAACCTTAGTCATGCA
CAAAACAATAAATTTTTCAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 110; Mature: 110

Protein sequence:

>110_residues
MEFYMSLEQKMEEKFHSTQVKMKEISVGMGKLESEYQKLLKDLGLSSEEVHEFASNASNYSAPIWEQLQNEKKQLDEKLN
LNLNNVRDPLKVKKAFSDHATIQSHWIYVR

Sequences:

>Translated_110_residues
MEFYMSLEQKMEEKFHSTQVKMKEISVGMGKLESEYQKLLKDLGLSSEEVHEFASNASNYSAPIWEQLQNEKKQLDEKLN
LNLNNVRDPLKVKKAFSDHATIQSHWIYVR
>Mature_110_residues
MEFYMSLEQKMEEKFHSTQVKMKEISVGMGKLESEYQKLLKDLGLSSEEVHEFASNASNYSAPIWEQLQNEKKQLDEKLN
LNLNNVRDPLKVKKAFSDHATIQSHWIYVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12936; Mature: 12936

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFYMSLEQKMEEKFHSTQVKMKEISVGMGKLESEYQKLLKDLGLSSEEVHEFASNASNY
CCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
SAPIWEQLQNEKKQLDEKLNLNLNNVRDPLKVKKAFSDHATIQSHWIYVR
CCHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHCCHHHHCCCEEC
>Mature Secondary Structure
MEFYMSLEQKMEEKFHSTQVKMKEISVGMGKLESEYQKLLKDLGLSSEEVHEFASNASNY
CCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
SAPIWEQLQNEKKQLDEKLNLNLNNVRDPLKVKKAFSDHATIQSHWIYVR
CCHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHCCHHHHCCCEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA