| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46446906
Identifier: 46446906
GI number: 46446906
Start: 1522243
End: 1524099
Strand: Direct
Name: 46446906
Synonym: pc1272
Alternate gene names: NA
Gene position: 1522243-1524099 (Clockwise)
Preceding gene: 46446905
Following gene: 46446908
Centisome position: 63.05
GC content: 37.16
Gene sequence:
>1857_bases TTGTGCAAAACAATTTTTCAGTCCTTTCTCAACTTATTCTTTAATTATCTCCAAAAAGAGCAGCTTCAGTCTCAATGGAG AGAAAGTTTTTGGGGGCAAAAAGAAATTATCGTTTCTAATTTTACCACAACTCATTCAGAATCTGGGATGTCTTTATCAA ATCCAAGCCAAATTTCATGCTTTGCCTCACCTCCCCCTATATTGAGCTTCCAGGATAATACTTACCTAAAAATTTCAAGT TCCCAAAAAACTTTGTTAATGGAAAAATCACCCTATTTTAAAATTCTTTGGTCGGGAAATTTTCGGGAAACCCTCCAAGA TCCCCTCGCTTTGAAGCAAAAAGAGTTTACTCATCTACTCAATTGTTTGATAAATGCTAATTTTAAAGTTCCTTTGCAAA AGATCCCTTCTTTGATTCAACTAGCAGATTACTATCAACTGACAAAAATTGTAAAAAATTTAGAAAAACAGTTGATTGCT GAGTGTAAATTAAAGAAATATGAGCTGTTTAACTCTAGAGAAGACAGTCTATTAGAGTTAAAAAAACTTTTAAATTTTGC GAACCAATATCAATTAAACACTTTAAAAAATTATTTAGAACTCACAGTTGTAAGTTCATTATTAAATCAGACATCTCATT TAACGGGATTTGAAAAAATTTTAAATCACTTTCCAAATGAAATAGAAGAACTCAATTTTTCAAAGAATGCTTCTTTGACT GATGCCCATCTCTTAGCGTTAAAAAATTGTAAAAATTTAAAAGTGCTTCATCTCCAAGAGTGCCGCAATCTCACGGATGC AGGATTAGCATATTTGACACCCTTAACGACTTTACAGCATTTAAATCTGGCTGGATGCAAATTTGCTAATGCAGGATTAG CGCATTTGACACCTTTGGTGGCTTTACAACATTTGAATCTGAGCCATTGTAGAAATCTTACGGATGCTGGATTACCGCAT TTGACACTCTTAACGGCTTTGACCTATTTGAATCTGAGCCATTGTAGAAATATCACAGATGCTGGATTAGCGCATTTGAC ACCTCTAACGGCTTTGACCTATTTGAATCTGAGTTCGTGTAATAATCTCACTGACGCTGGATTAGCGCATTTGACACCCT TAACGGCTTTGACCTATTTGAATCTGAGTTCGTGTAATAATCTCACTGACGCTGGATTGGCGCATTTGACACCTTTAGTG ACTTTAACGCATTTGAACCTGAGTTGGTGCTATAATTTCACAGATGCAGGATTAGCGCATTTAACTCCCTTAGTGGCTTT GCAGCATTTGGATCTGGGCCATTGTAGAAATATCACGGATGCTGGATTGGCGCATTTGACACCTTTAGTAGCTTTAACGC ATTTGAACCTAAGTTGGTGCTATAATTTTACAGATGCTGGATTGGCGCATTTAGCTCCCTTAGTGGCTTTGCAGCATTTA GATCTGAACGGATGCTGGCAACTCACCGATGCTGGATTAGCACATTTGGCACCTTTAGTGGCTTTAACGCATTTAGATCT GAGTTCCTGCAATCATCTCACTGACGCTGGATTGCCGCATTTAACGCCTTTAGTCGCTTTGCAGCACTTAGATTTGAGCT ATTGTAGAAATCTTACTGACGCTGGATTAGCGCATTTGGCACCTTTAGTGGCTTTAACACATTTGAACCTGAGTTCGTGT AATCATTTTACTGATGCCGGATTAACACATTTGACACCCTTATTGGCTTTGCAGGATTTGAATTTGAACTATTGCGAAAA TTTCACTGACGCTGGATTGGCGCATTTTAAATCCTTAGCAACTTTCCCAAATTTGAATCTAATTTGTTACCAAAATTGCA TCAATCTAGAGGATTAG
Upstream 100 bases:
>100_bases TAATCCGGTATTTAATTCTAGTAATCTCCTTGTTAGCACAGACACTTATTCTTACTACCAATCGAACAATCATTTAAAAT TTTCTGAACGAATTCATTTA
Downstream 100 bases:
>100_bases TGCATTTGATGTACTTAATAATATAATATATTTGCATCTGAGTTGGTGCAAAAACTTTCAATAACGCTGAATATAAAAAT TTGTTAGTTCCTTAAATTTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 618; Mature: 618
Protein sequence:
>618_residues MCKTIFQSFLNLFFNYLQKEQLQSQWRESFWGQKEIIVSNFTTTHSESGMSLSNPSQISCFASPPPILSFQDNTYLKISS SQKTLLMEKSPYFKILWSGNFRETLQDPLALKQKEFTHLLNCLINANFKVPLQKIPSLIQLADYYQLTKIVKNLEKQLIA ECKLKKYELFNSREDSLLELKKLLNFANQYQLNTLKNYLELTVVSSLLNQTSHLTGFEKILNHFPNEIEELNFSKNASLT DAHLLALKNCKNLKVLHLQECRNLTDAGLAYLTPLTTLQHLNLAGCKFANAGLAHLTPLVALQHLNLSHCRNLTDAGLPH LTLLTALTYLNLSHCRNITDAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPLV TLTHLNLSWCYNFTDAGLAHLTPLVALQHLDLGHCRNITDAGLAHLTPLVALTHLNLSWCYNFTDAGLAHLAPLVALQHL DLNGCWQLTDAGLAHLAPLVALTHLDLSSCNHLTDAGLPHLTPLVALQHLDLSYCRNLTDAGLAHLAPLVALTHLNLSSC NHFTDAGLTHLTPLLALQDLNLNYCENFTDAGLAHFKSLATFPNLNLICYQNCINLED
Sequences:
>Translated_618_residues MCKTIFQSFLNLFFNYLQKEQLQSQWRESFWGQKEIIVSNFTTTHSESGMSLSNPSQISCFASPPPILSFQDNTYLKISS SQKTLLMEKSPYFKILWSGNFRETLQDPLALKQKEFTHLLNCLINANFKVPLQKIPSLIQLADYYQLTKIVKNLEKQLIA ECKLKKYELFNSREDSLLELKKLLNFANQYQLNTLKNYLELTVVSSLLNQTSHLTGFEKILNHFPNEIEELNFSKNASLT DAHLLALKNCKNLKVLHLQECRNLTDAGLAYLTPLTTLQHLNLAGCKFANAGLAHLTPLVALQHLNLSHCRNLTDAGLPH LTLLTALTYLNLSHCRNITDAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPLV TLTHLNLSWCYNFTDAGLAHLTPLVALQHLDLGHCRNITDAGLAHLTPLVALTHLNLSWCYNFTDAGLAHLAPLVALQHL DLNGCWQLTDAGLAHLAPLVALTHLDLSSCNHLTDAGLPHLTPLVALQHLDLSYCRNLTDAGLAHLAPLVALTHLNLSSC NHFTDAGLTHLTPLLALQDLNLNYCENFTDAGLAHFKSLATFPNLNLICYQNCINLED >Mature_618_residues MCKTIFQSFLNLFFNYLQKEQLQSQWRESFWGQKEIIVSNFTTTHSESGMSLSNPSQISCFASPPPILSFQDNTYLKISS SQKTLLMEKSPYFKILWSGNFRETLQDPLALKQKEFTHLLNCLINANFKVPLQKIPSLIQLADYYQLTKIVKNLEKQLIA ECKLKKYELFNSREDSLLELKKLLNFANQYQLNTLKNYLELTVVSSLLNQTSHLTGFEKILNHFPNEIEELNFSKNASLT DAHLLALKNCKNLKVLHLQECRNLTDAGLAYLTPLTTLQHLNLAGCKFANAGLAHLTPLVALQHLNLSHCRNLTDAGLPH LTLLTALTYLNLSHCRNITDAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPLV TLTHLNLSWCYNFTDAGLAHLTPLVALQHLDLGHCRNITDAGLAHLTPLVALTHLNLSWCYNFTDAGLAHLAPLVALQHL DLNGCWQLTDAGLAHLAPLVALTHLDLSSCNHLTDAGLPHLTPLVALQHLDLSYCRNLTDAGLAHLAPLVALTHLNLSSC NHFTDAGLTHLTPLLALQDLNLNYCENFTDAGLAHFKSLATFPNLNLICYQNCINLED
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI22748931, Length=305, Percent_Identity=37.0491803278689, Blast_Score=154, Evalue=2e-37, Organism=Homo sapiens, GI161333852, Length=440, Percent_Identity=27.0454545454545, Blast_Score=126, Evalue=5e-29, Organism=Homo sapiens, GI161333854, Length=391, Percent_Identity=27.1099744245524, Blast_Score=119, Evalue=1e-26, Organism=Homo sapiens, GI284447308, Length=314, Percent_Identity=33.1210191082803, Blast_Score=111, Evalue=2e-24, Organism=Homo sapiens, GI27734755, Length=291, Percent_Identity=32.9896907216495, Blast_Score=106, Evalue=7e-23, Organism=Homo sapiens, GI6912466, Length=282, Percent_Identity=30.1418439716312, Blast_Score=100, Evalue=6e-21, Organism=Homo sapiens, GI289666746, Length=255, Percent_Identity=36.078431372549, Blast_Score=95, Evalue=3e-19, Organism=Homo sapiens, GI296531375, Length=260, Percent_Identity=34.2307692307692, Blast_Score=94, Evalue=4e-19, Organism=Homo sapiens, GI284447314, Length=242, Percent_Identity=32.2314049586777, Blast_Score=84, Evalue=5e-16, Organism=Caenorhabditis elegans, GI25151694, Length=307, Percent_Identity=30.2931596091205, Blast_Score=104, Evalue=1e-22, Organism=Caenorhabditis elegans, GI25151696, Length=307, Percent_Identity=30.2931596091205, Blast_Score=104, Evalue=2e-22, Organism=Saccharomyces cerevisiae, GI6322549, Length=383, Percent_Identity=29.5039164490862, Blast_Score=102, Evalue=1e-22, Organism=Drosophila melanogaster, GI17647819, Length=301, Percent_Identity=34.5514950166113, Blast_Score=136, Evalue=4e-32, Organism=Drosophila melanogaster, GI24662818, Length=259, Percent_Identity=37.4517374517375, Blast_Score=112, Evalue=8e-25, Organism=Drosophila melanogaster, GI21357913, Length=263, Percent_Identity=33.0798479087452, Blast_Score=96, Evalue=1e-19, Organism=Drosophila melanogaster, GI24652783, Length=322, Percent_Identity=28.8819875776398, Blast_Score=95, Evalue=2e-19, Organism=Drosophila melanogaster, GI161076547, Length=322, Percent_Identity=28.8819875776398, Blast_Score=94, Evalue=2e-19, Organism=Drosophila melanogaster, GI161076549, Length=322, Percent_Identity=28.8819875776398, Blast_Score=94, Evalue=2e-19, Organism=Drosophila melanogaster, GI161076545, Length=322, Percent_Identity=28.8819875776398, Blast_Score=94, Evalue=4e-19, Organism=Drosophila melanogaster, GI19921840, Length=305, Percent_Identity=29.5081967213115, Blast_Score=68, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68710; Mature: 68710
Theoretical pI: Translated: 6.89; Mature: 6.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.4 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 3.4 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCKTIFQSFLNLFFNYLQKEQLQSQWRESFWGQKEIIVSNFTTTHSESGMSLSNPSQISC CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEEE FASPPPILSFQDNTYLKISSSQKTLLMEKSPYFKILWSGNFRETLQDPLALKQKEFTHLL ECCCCCEEEECCCCEEEEECCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH NCLINANFKVPLQKIPSLIQLADYYQLTKIVKNLEKQLIAECKLKKYELFNSREDSLLEL HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH KKLLNFANQYQLNTLKNYLELTVVSSLLNQTSHLTGFEKILNHFPNEIEELNFSKNASLT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCC DAHLLALKNCKNLKVLHLQECRNLTDAGLAYLTPLTTLQHLNLAGCKFANAGLAHLTPLV HHHHHHHHCCCCCEEEEHHHHCCCHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH ALQHLNLSHCRNLTDAGLPHLTLLTALTYLNLSHCRNITDAGLAHLTPLTALTYLNLSSC HHHHCCHHHHCCCHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEHHHC NNLTDAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPLVTLTHLNLSWCYNFTDAGLAH CCCCCCCHHHHHHHHHHHHHEHHHCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHH LTPLVALQHLDLGHCRNITDAGLAHLTPLVALTHLNLSWCYNFTDAGLAHLAPLVALQHL HHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHCCHHEEECCCCCCHHHHHHHHHHHHC DLNGCWQLTDAGLAHLAPLVALTHLDLSSCNHLTDAGLPHLTPLVALQHLDLSYCRNLTD CCCCCEEHHHCCHHHHHHHHHHHHCCHHHCCCHHHCCCCHHHHHHHHHHCCHHHHCCCHH AGLAHLAPLVALTHLNLSSCNHFTDAGLTHLTPLLALQDLNLNYCENFTDAGLAHFKSLA HHHHHHHHHHHHHHCCHHHCCCHHHCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHH TFPNLNLICYQNCINLED CCCCCCEEEEECCCCCCC >Mature Secondary Structure MCKTIFQSFLNLFFNYLQKEQLQSQWRESFWGQKEIIVSNFTTTHSESGMSLSNPSQISC CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEEE FASPPPILSFQDNTYLKISSSQKTLLMEKSPYFKILWSGNFRETLQDPLALKQKEFTHLL ECCCCCEEEECCCCEEEEECCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH NCLINANFKVPLQKIPSLIQLADYYQLTKIVKNLEKQLIAECKLKKYELFNSREDSLLEL HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH KKLLNFANQYQLNTLKNYLELTVVSSLLNQTSHLTGFEKILNHFPNEIEELNFSKNASLT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCC DAHLLALKNCKNLKVLHLQECRNLTDAGLAYLTPLTTLQHLNLAGCKFANAGLAHLTPLV HHHHHHHHCCCCCEEEEHHHHCCCHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH ALQHLNLSHCRNLTDAGLPHLTLLTALTYLNLSHCRNITDAGLAHLTPLTALTYLNLSSC HHHHCCHHHHCCCHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEHHHC NNLTDAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPLVTLTHLNLSWCYNFTDAGLAH CCCCCCCHHHHHHHHHHHHHEHHHCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHH LTPLVALQHLDLGHCRNITDAGLAHLTPLVALTHLNLSWCYNFTDAGLAHLAPLVALQHL HHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHCCHHEEECCCCCCHHHHHHHHHHHHC DLNGCWQLTDAGLAHLAPLVALTHLDLSSCNHLTDAGLPHLTPLVALQHLDLSYCRNLTD CCCCCEEHHHCCHHHHHHHHHHHHCCHHHCCCHHHCCCCHHHHHHHHHHCCHHHHCCCHH AGLAHLAPLVALTHLNLSSCNHFTDAGLTHLTPLLALQDLNLNYCENFTDAGLAHFKSLA HHHHHHHHHHHHHHCCHHHCCCHHHCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHH TFPNLNLICYQNCINLED CCCCCCEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA