| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46446787
Identifier: 46446787
GI number: 46446787
Start: 1382535
End: 1383407
Strand: Reverse
Name: 46446787
Synonym: pc1153
Alternate gene names: NA
Gene position: 1383407-1382535 (Counterclockwise)
Preceding gene: 46446788
Following gene: 46446785
Centisome position: 57.3
GC content: 35.05
Gene sequence:
>873_bases ATGGATTTTAAAGTTCGAAGTTATTTTTTATCTTTGATAATCATCTGTATTCTTTCAACTCTAACAAGCTGTTGCCCCTC TTCTAGTGCTTACAGAGAGTTGTACTCCCATTTACGTCAATATAAAAAAACACGTGTGCCAATGAGGGAAGAGAATTATT TTTTGATTATTTTAGTCAATGCACGTCATTTAGATTATACGGATACCCGTTCATTTTTTCATACAGTGGCCAAGCATCCC CGTGATGCCACTAAAAATGGAGATTTGGGACATGCTTGGATCTATTTACAAGGAAATATCAATGGAAGAATAGTCGTTAT TGAAGGAGGACATTCTGGAGAAAGAGGAATGACAGATGTTCGTTATTTTGATGGCATCATGAATTATAATGATTGGGGAT ATGTAAATCCCACTTTAGAACAAAGGAAACATCCTTGTTATGAACCCAATCCTGTTAAATATTTATGGGCAACTTTAAAC GATGGTTATTTTCAACAAGGAACAGGAGGGCATAGACCCACCTACGCTGCAAAAATTTCATTAACTAAACAACAATTCAA TGCAATTATTCAAGCCATCAAAATCGATGCTTATCCTTATCACCATTATTCATTGACGCAACAGCAATGTTCAAATTTTG TTTCGAAAATAAGTGAACTAGCCGGTTTAAAATTAGAATCAGAAATTGCTATGCCTATTTATCCCTCTGTCTGGTATAGA GGGCAAATGGTCCGGCTTTGGGAAGATCCTCAATATTCAGTAATCAAACTTGCAACACCTGATATCCTTGAAAAATCACT AATGAAGGCTGTACAAAAAGGTAATGCAGAATATGCTTTAGATTGGTACTTAAACAATAAATCACATAACTAA
Upstream 100 bases:
>100_bases GCATTGCCAAGCTTACGACCGTATCTTATTTATTCGTACAATTAGACGGACAGGCCCTTCCACATTGAGAGCAGTTTTGC ATTTTTCTCAAAGTTAAGCT
Downstream 100 bases:
>100_bases AACTTTAATCATCAAAAAATAGTAATTAATCGGATTAGTTATTCACCTTTAATTTTTGAATATTTTTAGTTTCAATAATA CTTTGATTTAAAAATATTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 290; Mature: 290
Protein sequence:
>290_residues MDFKVRSYFLSLIIICILSTLTSCCPSSSAYRELYSHLRQYKKTRVPMREENYFLIILVNARHLDYTDTRSFFHTVAKHP RDATKNGDLGHAWIYLQGNINGRIVVIEGGHSGERGMTDVRYFDGIMNYNDWGYVNPTLEQRKHPCYEPNPVKYLWATLN DGYFQQGTGGHRPTYAAKISLTKQQFNAIIQAIKIDAYPYHHYSLTQQQCSNFVSKISELAGLKLESEIAMPIYPSVWYR GQMVRLWEDPQYSVIKLATPDILEKSLMKAVQKGNAEYALDWYLNNKSHN
Sequences:
>Translated_290_residues MDFKVRSYFLSLIIICILSTLTSCCPSSSAYRELYSHLRQYKKTRVPMREENYFLIILVNARHLDYTDTRSFFHTVAKHP RDATKNGDLGHAWIYLQGNINGRIVVIEGGHSGERGMTDVRYFDGIMNYNDWGYVNPTLEQRKHPCYEPNPVKYLWATLN DGYFQQGTGGHRPTYAAKISLTKQQFNAIIQAIKIDAYPYHHYSLTQQQCSNFVSKISELAGLKLESEIAMPIYPSVWYR GQMVRLWEDPQYSVIKLATPDILEKSLMKAVQKGNAEYALDWYLNNKSHN >Mature_290_residues MDFKVRSYFLSLIIICILSTLTSCCPSSSAYRELYSHLRQYKKTRVPMREENYFLIILVNARHLDYTDTRSFFHTVAKHP RDATKNGDLGHAWIYLQGNINGRIVVIEGGHSGERGMTDVRYFDGIMNYNDWGYVNPTLEQRKHPCYEPNPVKYLWATLN DGYFQQGTGGHRPTYAAKISLTKQQFNAIIQAIKIDAYPYHHYSLTQQQCSNFVSKISELAGLKLESEIAMPIYPSVWYR GQMVRLWEDPQYSVIKLATPDILEKSLMKAVQKGNAEYALDWYLNNKSHN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33601; Mature: 33601
Theoretical pI: Translated: 8.94; Mature: 8.94
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDFKVRSYFLSLIIICILSTLTSCCPSSSAYRELYSHLRQYKKTRVPMREENYFLIILVN CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEE ARHLDYTDTRSFFHTVAKHPRDATKNGDLGHAWIYLQGNINGRIVVIEGGHSGERGMTDV CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCHH RYFDGIMNYNDWGYVNPTLEQRKHPCYEPNPVKYLWATLNDGYFQQGTGGHRPTYAAKIS HHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEEECCCCCEECCCCCCCCCEEEEEE LTKQQFNAIIQAIKIDAYPYHHYSLTQQQCSNFVSKISELAGLKLESEIAMPIYPSVWYR ECHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCHHCC GQMVRLWEDPQYSVIKLATPDILEKSLMKAVQKGNAEYALDWYLNNKSHN CEEEEEECCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC >Mature Secondary Structure MDFKVRSYFLSLIIICILSTLTSCCPSSSAYRELYSHLRQYKKTRVPMREENYFLIILVN CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEE ARHLDYTDTRSFFHTVAKHPRDATKNGDLGHAWIYLQGNINGRIVVIEGGHSGERGMTDV CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCHH RYFDGIMNYNDWGYVNPTLEQRKHPCYEPNPVKYLWATLNDGYFQQGTGGHRPTYAAKIS HHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEEECCCCCEECCCCCCCCCEEEEEE LTKQQFNAIIQAIKIDAYPYHHYSLTQQQCSNFVSKISELAGLKLESEIAMPIYPSVWYR ECHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCHHCC GQMVRLWEDPQYSVIKLATPDILEKSLMKAVQKGNAEYALDWYLNNKSHN CEEEEEECCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA