Definition Candidatus Protochlamydia amoebophila UWE25, complete genome.
Accession NC_005861
Length 2,414,465

Click here to switch to the map view.

The map label for this gene is 46446787

Identifier: 46446787

GI number: 46446787

Start: 1382535

End: 1383407

Strand: Reverse

Name: 46446787

Synonym: pc1153

Alternate gene names: NA

Gene position: 1383407-1382535 (Counterclockwise)

Preceding gene: 46446788

Following gene: 46446785

Centisome position: 57.3

GC content: 35.05

Gene sequence:

>873_bases
ATGGATTTTAAAGTTCGAAGTTATTTTTTATCTTTGATAATCATCTGTATTCTTTCAACTCTAACAAGCTGTTGCCCCTC
TTCTAGTGCTTACAGAGAGTTGTACTCCCATTTACGTCAATATAAAAAAACACGTGTGCCAATGAGGGAAGAGAATTATT
TTTTGATTATTTTAGTCAATGCACGTCATTTAGATTATACGGATACCCGTTCATTTTTTCATACAGTGGCCAAGCATCCC
CGTGATGCCACTAAAAATGGAGATTTGGGACATGCTTGGATCTATTTACAAGGAAATATCAATGGAAGAATAGTCGTTAT
TGAAGGAGGACATTCTGGAGAAAGAGGAATGACAGATGTTCGTTATTTTGATGGCATCATGAATTATAATGATTGGGGAT
ATGTAAATCCCACTTTAGAACAAAGGAAACATCCTTGTTATGAACCCAATCCTGTTAAATATTTATGGGCAACTTTAAAC
GATGGTTATTTTCAACAAGGAACAGGAGGGCATAGACCCACCTACGCTGCAAAAATTTCATTAACTAAACAACAATTCAA
TGCAATTATTCAAGCCATCAAAATCGATGCTTATCCTTATCACCATTATTCATTGACGCAACAGCAATGTTCAAATTTTG
TTTCGAAAATAAGTGAACTAGCCGGTTTAAAATTAGAATCAGAAATTGCTATGCCTATTTATCCCTCTGTCTGGTATAGA
GGGCAAATGGTCCGGCTTTGGGAAGATCCTCAATATTCAGTAATCAAACTTGCAACACCTGATATCCTTGAAAAATCACT
AATGAAGGCTGTACAAAAAGGTAATGCAGAATATGCTTTAGATTGGTACTTAAACAATAAATCACATAACTAA

Upstream 100 bases:

>100_bases
GCATTGCCAAGCTTACGACCGTATCTTATTTATTCGTACAATTAGACGGACAGGCCCTTCCACATTGAGAGCAGTTTTGC
ATTTTTCTCAAAGTTAAGCT

Downstream 100 bases:

>100_bases
AACTTTAATCATCAAAAAATAGTAATTAATCGGATTAGTTATTCACCTTTAATTTTTGAATATTTTTAGTTTCAATAATA
CTTTGATTTAAAAATATTTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MDFKVRSYFLSLIIICILSTLTSCCPSSSAYRELYSHLRQYKKTRVPMREENYFLIILVNARHLDYTDTRSFFHTVAKHP
RDATKNGDLGHAWIYLQGNINGRIVVIEGGHSGERGMTDVRYFDGIMNYNDWGYVNPTLEQRKHPCYEPNPVKYLWATLN
DGYFQQGTGGHRPTYAAKISLTKQQFNAIIQAIKIDAYPYHHYSLTQQQCSNFVSKISELAGLKLESEIAMPIYPSVWYR
GQMVRLWEDPQYSVIKLATPDILEKSLMKAVQKGNAEYALDWYLNNKSHN

Sequences:

>Translated_290_residues
MDFKVRSYFLSLIIICILSTLTSCCPSSSAYRELYSHLRQYKKTRVPMREENYFLIILVNARHLDYTDTRSFFHTVAKHP
RDATKNGDLGHAWIYLQGNINGRIVVIEGGHSGERGMTDVRYFDGIMNYNDWGYVNPTLEQRKHPCYEPNPVKYLWATLN
DGYFQQGTGGHRPTYAAKISLTKQQFNAIIQAIKIDAYPYHHYSLTQQQCSNFVSKISELAGLKLESEIAMPIYPSVWYR
GQMVRLWEDPQYSVIKLATPDILEKSLMKAVQKGNAEYALDWYLNNKSHN
>Mature_290_residues
MDFKVRSYFLSLIIICILSTLTSCCPSSSAYRELYSHLRQYKKTRVPMREENYFLIILVNARHLDYTDTRSFFHTVAKHP
RDATKNGDLGHAWIYLQGNINGRIVVIEGGHSGERGMTDVRYFDGIMNYNDWGYVNPTLEQRKHPCYEPNPVKYLWATLN
DGYFQQGTGGHRPTYAAKISLTKQQFNAIIQAIKIDAYPYHHYSLTQQQCSNFVSKISELAGLKLESEIAMPIYPSVWYR
GQMVRLWEDPQYSVIKLATPDILEKSLMKAVQKGNAEYALDWYLNNKSHN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33601; Mature: 33601

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFKVRSYFLSLIIICILSTLTSCCPSSSAYRELYSHLRQYKKTRVPMREENYFLIILVN
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEE
ARHLDYTDTRSFFHTVAKHPRDATKNGDLGHAWIYLQGNINGRIVVIEGGHSGERGMTDV
CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCHH
RYFDGIMNYNDWGYVNPTLEQRKHPCYEPNPVKYLWATLNDGYFQQGTGGHRPTYAAKIS
HHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEEECCCCCEECCCCCCCCCEEEEEE
LTKQQFNAIIQAIKIDAYPYHHYSLTQQQCSNFVSKISELAGLKLESEIAMPIYPSVWYR
ECHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCHHCC
GQMVRLWEDPQYSVIKLATPDILEKSLMKAVQKGNAEYALDWYLNNKSHN
CEEEEEECCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC
>Mature Secondary Structure
MDFKVRSYFLSLIIICILSTLTSCCPSSSAYRELYSHLRQYKKTRVPMREENYFLIILVN
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEE
ARHLDYTDTRSFFHTVAKHPRDATKNGDLGHAWIYLQGNINGRIVVIEGGHSGERGMTDV
CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCHH
RYFDGIMNYNDWGYVNPTLEQRKHPCYEPNPVKYLWATLNDGYFQQGTGGHRPTYAAKIS
HHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEEECCCCCEECCCCCCCCCEEEEEE
LTKQQFNAIIQAIKIDAYPYHHYSLTQQQCSNFVSKISELAGLKLESEIAMPIYPSVWYR
ECHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCHHCC
GQMVRLWEDPQYSVIKLATPDILEKSLMKAVQKGNAEYALDWYLNNKSHN
CEEEEEECCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA