| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46446739
Identifier: 46446739
GI number: 46446739
Start: 1324524
End: 1325027
Strand: Reverse
Name: 46446739
Synonym: pc1105
Alternate gene names: NA
Gene position: 1325027-1324524 (Counterclockwise)
Preceding gene: 46446741
Following gene: 46446738
Centisome position: 54.88
GC content: 38.69
Gene sequence:
>504_bases ATGTCGTTTGAAAATGCAAAAGAAAATCTTAAAGAATTCGGGAAAGAACTTGGCTTAGAGGGATTAGAATTTGATGAAAA TAATACGTGTATTTTGGGAATCGATGATGAGTTTTCGCTACACTTAACTTATGAGCCAAATTCTAAACGTCTATACCTTT ACTCCCCTCTTCTTGATGGTCTCCCAAGAGATGAAAAAACGAAATTAAGGCTATATGAGCGTTTATTAGAAGGTTCTATG CTAGGTGGTCAAATGGCTGGTGGTGGAGTTGGAGTAGCAGTAAAAGAAGAACTCATTCTTATGCACTGCACATTGGATAT GGAACATGCAGTTTCTTCTGCATTAAGAGCTTTTGCTCCCCTTTATGTTGAAACAGTCGAAAAATGGCGCAAAATTTGTA GCGAAGTTTCTGAAGGTCGTGATGAGGGTGCAAATGCTTCCAAATCCCTCCCTCCACAAATTACAGGTGGCGGAAAACAA GGTCAAGGATTTATCAAGATTTAA
Upstream 100 bases:
>100_bases AATGGTTGTGAATTTAATATAATAAAGAGTCAAAATAGTAAGTTAAAATTAGATAACCCGTAGAAAAAATCGGTGTGTTA TCTAACCTGAGGAGGTTATT
Downstream 100 bases:
>100_bases TCCTAAAAAGGGGTACTTACTCCAAATGACATGAAACCTCGAGGAGTTGCTATTAACTATTTAGTTAAAAGCAGCTCTTT TTTTTAGAAGGGTTTACTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 167; Mature: 166
Protein sequence:
>167_residues MSFENAKENLKEFGKELGLEGLEFDENNTCILGIDDEFSLHLTYEPNSKRLYLYSPLLDGLPRDEKTKLRLYERLLEGSM LGGQMAGGGVGVAVKEELILMHCTLDMEHAVSSALRAFAPLYVETVEKWRKICSEVSEGRDEGANASKSLPPQITGGGKQ GQGFIKI
Sequences:
>Translated_167_residues MSFENAKENLKEFGKELGLEGLEFDENNTCILGIDDEFSLHLTYEPNSKRLYLYSPLLDGLPRDEKTKLRLYERLLEGSM LGGQMAGGGVGVAVKEELILMHCTLDMEHAVSSALRAFAPLYVETVEKWRKICSEVSEGRDEGANASKSLPPQITGGGKQ GQGFIKI >Mature_166_residues SFENAKENLKEFGKELGLEGLEFDENNTCILGIDDEFSLHLTYEPNSKRLYLYSPLLDGLPRDEKTKLRLYERLLEGSML GGQMAGGGVGVAVKEELILMHCTLDMEHAVSSALRAFAPLYVETVEKWRKICSEVSEGRDEGANASKSLPPQITGGGKQG QGFIKI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18456; Mature: 18325
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFENAKENLKEFGKELGLEGLEFDENNTCILGIDDEFSLHLTYEPNSKRLYLYSPLLDG CCCCHHHHHHHHHHHHHCCCCCEECCCCEEEEEECCCEEEEEEECCCCCEEEEECCHHCC LPRDEKTKLRLYERLLEGSMLGGQMAGGGVGVAVKEELILMHCTLDMEHAVSSALRAFAP CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHCEEEEEECCCHHHHHHHHHHHHHH LYVETVEKWRKICSEVSEGRDEGANASKSLPPQITGGGKQGQGFIKI HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC >Mature Secondary Structure SFENAKENLKEFGKELGLEGLEFDENNTCILGIDDEFSLHLTYEPNSKRLYLYSPLLDG CCCHHHHHHHHHHHHHCCCCCEECCCCEEEEEECCCEEEEEEECCCCCEEEEECCHHCC LPRDEKTKLRLYERLLEGSMLGGQMAGGGVGVAVKEELILMHCTLDMEHAVSSALRAFAP CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHCEEEEEECCCHHHHHHHHHHHHHH LYVETVEKWRKICSEVSEGRDEGANASKSLPPQITGGGKQGQGFIKI HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA