| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46446721
Identifier: 46446721
GI number: 46446721
Start: 1301057
End: 1302202
Strand: Direct
Name: 46446721
Synonym: pc1087
Alternate gene names: NA
Gene position: 1301057-1302202 (Clockwise)
Preceding gene: 46446720
Following gene: 46446725
Centisome position: 53.89
GC content: 31.59
Gene sequence:
>1146_bases TTGCGAACCAGGACTGGTTTTTTTAAAAATAAAAGTTTAAAATTAAGTGAACCAATAATTTACCAATTAAGAGGTATTAT TATGATTCCCAAGCCAAAAGATTATTTTTTTACTCCAACTGATTTACAAGGAACTATAGACACTTTTTTAAGACCTAATG CAATTCTTACTCAACAAAGACAACGACAACTAGAATTAGTTCTGGAAAATTTTTTCTTAAAAAAAGACCAAGAAAATCTT ACTCAGCAATTGACAGATATCAAGTGCAATATAACTGGTAAGCAAATTGAAAATGAGGAATTGAAAAACAAAAGTCAGCA GGAATTACAACAAATCATAAAAATAAGCGAGAAGTTATTAGCTGCGTGTAAAAAGGAGTGCGAAGATCATGCGCAGTTTA AAAAAGAAGCAGATCAAAAAGTAGCTTCTATCTCTCAATCTTTTGCCAAGTTACGCGAAAATGATGCTAAACAACTTCAT GAACTCAAAAGAATGCATCAGCAATGTGATGACTTACAGTTATCTCATAAGCAGGATATGCAATTACTTGGTCAACTCAA TGAACAGGTCCAAAAAATAAAAGAATCTTTTCACTTTCTTGGACAAGAATATAAGCAACACTTCAAAGACTTTCAAGTTC TTAAGCAACAATTTGGCCAAATTCGCAAAGATTTAGAACTTATTAAAAATCAATTAGACTACATGGGAAAGGATCTTGAA GACATTAGACAAGATTTTAAACGTTTTAAAGAAGAGATGAACAGCTTAACTCAAGATTTTCGAGTAATTAGAGCCCAAAT AGAAGAATTGGACCGTCGAGAAGATATTAGCAACAAAGCTATTGCGGATCGATTAGAAAAAATGCAAGTCGCATTTGATC AACTTGCAGCTCAGATGAATAAGGATAAATTTGTACAGTCAACAAGTCTACCTCAAATTTCAGAGAGTTCTTTTGATAGA TCAAATTCAAAAAATATTTTAACTTTTAGTTTTTTTCGGTCTCTATTTAAATGGAATATCTTCAAGATAATTTGTTTAAA TCACTTTAATCATCACCATTTATTTCGTCGTACTTCGAATATCTGGACTTCGAATATCTGGGCAAGAAAAATCCCAATAC CAGTTGATTCTAAAGAACTGGGTTAA
Upstream 100 bases:
>100_bases CTGAGACCCTTAATGCTTTAAGTTTTATACTTGGTATAGTTGGCGGTGGTATAACAGTATTAGGTTATTTGCGAAAATAA TTCAATTAGGAAAAACCAAC
Downstream 100 bases:
>100_bases CTATTTAGTAATAACTAATGCCAAGGTGGAACACCTTGGCTGTTTTTTTATACAACTATAAAACTTCTTAAAAAAACCTT AATTTTCAAAGTCCGTCATC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 381; Mature: 381
Protein sequence:
>381_residues MRTRTGFFKNKSLKLSEPIIYQLRGIIMIPKPKDYFFTPTDLQGTIDTFLRPNAILTQQRQRQLELVLENFFLKKDQENL TQQLTDIKCNITGKQIENEELKNKSQQELQQIIKISEKLLAACKKECEDHAQFKKEADQKVASISQSFAKLRENDAKQLH ELKRMHQQCDDLQLSHKQDMQLLGQLNEQVQKIKESFHFLGQEYKQHFKDFQVLKQQFGQIRKDLELIKNQLDYMGKDLE DIRQDFKRFKEEMNSLTQDFRVIRAQIEELDRREDISNKAIADRLEKMQVAFDQLAAQMNKDKFVQSTSLPQISESSFDR SNSKNILTFSFFRSLFKWNIFKIICLNHFNHHHLFRRTSNIWTSNIWARKIPIPVDSKELG
Sequences:
>Translated_381_residues MRTRTGFFKNKSLKLSEPIIYQLRGIIMIPKPKDYFFTPTDLQGTIDTFLRPNAILTQQRQRQLELVLENFFLKKDQENL TQQLTDIKCNITGKQIENEELKNKSQQELQQIIKISEKLLAACKKECEDHAQFKKEADQKVASISQSFAKLRENDAKQLH ELKRMHQQCDDLQLSHKQDMQLLGQLNEQVQKIKESFHFLGQEYKQHFKDFQVLKQQFGQIRKDLELIKNQLDYMGKDLE DIRQDFKRFKEEMNSLTQDFRVIRAQIEELDRREDISNKAIADRLEKMQVAFDQLAAQMNKDKFVQSTSLPQISESSFDR SNSKNILTFSFFRSLFKWNIFKIICLNHFNHHHLFRRTSNIWTSNIWARKIPIPVDSKELG >Mature_381_residues MRTRTGFFKNKSLKLSEPIIYQLRGIIMIPKPKDYFFTPTDLQGTIDTFLRPNAILTQQRQRQLELVLENFFLKKDQENL TQQLTDIKCNITGKQIENEELKNKSQQELQQIIKISEKLLAACKKECEDHAQFKKEADQKVASISQSFAKLRENDAKQLH ELKRMHQQCDDLQLSHKQDMQLLGQLNEQVQKIKESFHFLGQEYKQHFKDFQVLKQQFGQIRKDLELIKNQLDYMGKDLE DIRQDFKRFKEEMNSLTQDFRVIRAQIEELDRREDISNKAIADRLEKMQVAFDQLAAQMNKDKFVQSTSLPQISESSFDR SNSKNILTFSFFRSLFKWNIFKIICLNHFNHHHLFRRTSNIWTSNIWARKIPIPVDSKELG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45278; Mature: 45278
Theoretical pI: Translated: 9.72; Mature: 9.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTRTGFFKNKSLKLSEPIIYQLRGIIMIPKPKDYFFTPTDLQGTIDTFLRPNAILTQQR CCCCCCCCCCCCCCCCCHHHHHHCCCEECCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH QRQLELVLENFFLKKDQENLTQQLTDIKCNITGKQIENEELKNKSQQELQQIIKISEKLL HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHH AACKKECEDHAQFKKEADQKVASISQSFAKLRENDAKQLHELKRMHQQCDDLQLSHKQDM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QLLGQLNEQVQKIKESFHFLGQEYKQHFKDFQVLKQQFGQIRKDLELIKNQLDYMGKDLE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH DIRQDFKRFKEEMNSLTQDFRVIRAQIEELDRREDISNKAIADRLEKMQVAFDQLAAQMN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH KDKFVQSTSLPQISESSFDRSNSKNILTFSFFRSLFKWNIFKIICLNHFNHHHLFRRTSN HHHHHHHCCCCCCCHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH IWTSNIWARKIPIPVDSKELG HHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure MRTRTGFFKNKSLKLSEPIIYQLRGIIMIPKPKDYFFTPTDLQGTIDTFLRPNAILTQQR CCCCCCCCCCCCCCCCCHHHHHHCCCEECCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH QRQLELVLENFFLKKDQENLTQQLTDIKCNITGKQIENEELKNKSQQELQQIIKISEKLL HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHH AACKKECEDHAQFKKEADQKVASISQSFAKLRENDAKQLHELKRMHQQCDDLQLSHKQDM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QLLGQLNEQVQKIKESFHFLGQEYKQHFKDFQVLKQQFGQIRKDLELIKNQLDYMGKDLE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH DIRQDFKRFKEEMNSLTQDFRVIRAQIEELDRREDISNKAIADRLEKMQVAFDQLAAQMN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH KDKFVQSTSLPQISESSFDRSNSKNILTFSFFRSLFKWNIFKIICLNHFNHHHLFRRTSN HHHHHHHCCCCCCCHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH IWTSNIWARKIPIPVDSKELG HHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA