Definition Candidatus Protochlamydia amoebophila UWE25, complete genome.
Accession NC_005861
Length 2,414,465

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The map label for this gene is 46446673

Identifier: 46446673

GI number: 46446673

Start: 1235690

End: 1238296

Strand: Reverse

Name: 46446673

Synonym: pc1039

Alternate gene names: NA

Gene position: 1238296-1235690 (Counterclockwise)

Preceding gene: 46446675

Following gene: 46446672

Centisome position: 51.29

GC content: 32.22

Gene sequence:

>2607_bases
ATGTTGGTTGGTGATCTACACACATCTATTCAATTTGGACAAAATTTTAATCCTTTCACAGCAACCGTCAATTCACTTGT
GGAGACGATAACTTTTATATTTTTTAATACCATCACCCTAGGTACTTACGGTAGTTTGGAAATTTTAGCGAAAAAAAATA
AGATAAATAATCTTGAACGCGTGCAAAAACAAATGCAAGAGGAATTATCTAATTTCATCCAGAAATGGAATGATCTAGAA
AGCCGCTTAGCAACTGTTCGTGAAGAAATTTTAAATAAAACTCAAGGTGCGACTTTCATTTCAGAGGAAAATTTAACTAC
CTTAGAAATCGAAACTAAAAACTTAAAAAGACAATTTAGCTTATTATTCCCAGATTCAGATTTATCTATCAGTTTTGCTA
ATTTTTTAAAAAATTTAATAACAAATTTCTTAACTTTAGGTATTTACAGTGCCTATCAAAATTCTTTATTAAATAAAAAA
GTTTCGCTTTTGATAAAGCAAAATAATTACATTAAAGATAAATTTCAGAGGGATAACGAGCAAAAAGAGCATCAAATTTT
ATCAAATATAAAAATCGCAAAATCATTTGTAAGTTGGCAAAAAGGTTTACAAGCTTATAGCCAAAATCCCCATATCATAG
AAAATGAAATTTCAGAAATTAGACAAAAATTAATTGAAGACGAAGCTTGTTTAAGGAAACTAGAATCTGATAAAAAGAAC
TGGGAAACGCTTCATATTGATTTAACAAGATTGCAGGAGCAGTGCGTCAAACTGGACAGCCAACGTTTAGCATTAAAAAA
AGTCTATGCAGACGTTTTTGAACAAATGACTTATGAAAAAACTTTAGAAGTTATTGGACAAGATAAGGCTAAAGTAAAGC
AATTACAGCAAAAATTAGACCAAATTTCTCGTATAAAAAAACAGTCAGGAACGTCTATTCTTGGGCAGTTAAAACCGATA
AATCCCTCAGACAAAAAGACATTAGATCAGTATGGAATCGTTTTAGCTGATGAAGAAGTACAAGGAGATTATGGTTTAAA
TAGTAATGATGATGAAGAGAATTTGTTTACAGATTACGTTAAACGAAATGAAAAAACAGTGACTCCGGAGAAATTCATAA
ATGAAAGTTTGACATATATTTTAGACAAAATGCTTAAATTAGGCAATGACTCAACATCGAATGTTAAATTTAATGATAGT
GAAATGATTTATCTAGATCCAGACTATTTATATAGTAAAATGGCTATTTATCAACTTCTCGTATTAGATGTATTAGAGCA
TGGTGCTATTGTCAGAGACTGTCAAGGAATAAAATTGAAAATCGGAAGAGCTTCTGAGCTAGAAATGAGGCCTTCTAATC
CTGCTCAAGTAGGAACTTTTGAAAATGGCCGCTTCGGAAGCAAAATCATTTTGAGAAATGAAGACCCATTTGGCCCAGTT
TCGGGGACGGCAGGTTTACAATATGGAATAGATCCTGTAAGAGCAAAACGAATTTGGATTTTGTTGACTGAAGAAGAGCA
ACAATATCTTTATTATTGGCTTATGGATCCTTTTTTCGAAGAAGGAAGTCAAGAAAGTAAAAGTTTGAGAGAATTTGTTA
CAAGGGGGGATAAAAAAAGAGTTGCGCTTGTTAATCTTGTTTATGACCATGTTTGTGATATAGCTGCCTCTATTATGAAA
AATTTTGAAAAGCATACAGGAGTCGTTTGGCAGGAAAAAATGACAAATGATAAACCTCTTGTAACTCCTTATAAGAAAGT
AAGCATAAACATTTTGGATCAAATCGAAGACTCTGCACCTATTGTAGCATGGCAAATGAATATTGAAATTCTTGCGAAAT
ATCCTTTGCTTTATACTGCTTTGCAAGAGGCTCAAGCAGATCATTCTATCTTACAAATGATGCAAATGATCCCTGGTTAT
TTGCAAAATCCTTTAAATAAAGCATATGCAGCTCAATGGAAGAGTGATGATAAAATCAAAGGACTCTCTGAACAATACTA
CGGGAGTCATGAATTGTTAGAAGGCTATGTTTACGATACTTCTCCTCGCGGGTGTTTGTTCTCCAATCTCTTAGCTATCA
TTATGACAAATGAAAATTATGTTAATAAAAGATATTTAAAATTTTTAAAAGAAGCGGTGGCAGATTGTTTAGATAACGAA
GAAACAGCAAAAGAATTTAAAGATAGAATTAAACAAGATTATCATTGGTCTCTCAAACAATACCAAAAGTGGTTGAGAGG
AGAATCGATAGAAATGATTTCCGAATATTCTGATATTGAGATTGAATTGACTGCTCGATTAATCGGGGTGAAAATAGGTG
TATTTGTGCTTGGCCAAAATACGGCTCTTGATGAATCTGGAGCTATGATTCCAGCTGGTCAAATCAATTACTTTGGACCA
AACACAAAAGAAGTTTATTACCTTTATAATCATCCGAGTGTCACTTACTATGGATTATTTTCAAAATATCATAAAGGTGA
GAATTTAAAAACTTATCTAAGTTCATTTGATGAAAATGTATTTGGAGAGGGGATTGTCGAAAGGATTGAAAGCACTGTTA
ATAAATTGCACCTTTATTGGAGATTGTTAGCTCAAGCTAAAGATTAA

Upstream 100 bases:

>100_bases
TAGTGTTTAATTTTTATTTTTAATATGCATTATATTAAGAATTTATTGGATTTTCAAAATTATTTAATTTAATTAATTTT
TCCAGTTAAGAAGGGATAAC

Downstream 100 bases:

>100_bases
TTGCTTTAGGGTGTCTAAGGTATGAGAGTATAAATTAATACGAATTATCATAAGTATATAGGAATTTATGAGTAACTTGA
CAGTACAACCAAGCAGTTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 868; Mature: 868

Protein sequence:

>868_residues
MLVGDLHTSIQFGQNFNPFTATVNSLVETITFIFFNTITLGTYGSLEILAKKNKINNLERVQKQMQEELSNFIQKWNDLE
SRLATVREEILNKTQGATFISEENLTTLEIETKNLKRQFSLLFPDSDLSISFANFLKNLITNFLTLGIYSAYQNSLLNKK
VSLLIKQNNYIKDKFQRDNEQKEHQILSNIKIAKSFVSWQKGLQAYSQNPHIIENEISEIRQKLIEDEACLRKLESDKKN
WETLHIDLTRLQEQCVKLDSQRLALKKVYADVFEQMTYEKTLEVIGQDKAKVKQLQQKLDQISRIKKQSGTSILGQLKPI
NPSDKKTLDQYGIVLADEEVQGDYGLNSNDDEENLFTDYVKRNEKTVTPEKFINESLTYILDKMLKLGNDSTSNVKFNDS
EMIYLDPDYLYSKMAIYQLLVLDVLEHGAIVRDCQGIKLKIGRASELEMRPSNPAQVGTFENGRFGSKIILRNEDPFGPV
SGTAGLQYGIDPVRAKRIWILLTEEEQQYLYYWLMDPFFEEGSQESKSLREFVTRGDKKRVALVNLVYDHVCDIAASIMK
NFEKHTGVVWQEKMTNDKPLVTPYKKVSINILDQIEDSAPIVAWQMNIEILAKYPLLYTALQEAQADHSILQMMQMIPGY
LQNPLNKAYAAQWKSDDKIKGLSEQYYGSHELLEGYVYDTSPRGCLFSNLLAIIMTNENYVNKRYLKFLKEAVADCLDNE
ETAKEFKDRIKQDYHWSLKQYQKWLRGESIEMISEYSDIEIELTARLIGVKIGVFVLGQNTALDESGAMIPAGQINYFGP
NTKEVYYLYNHPSVTYYGLFSKYHKGENLKTYLSSFDENVFGEGIVERIESTVNKLHLYWRLLAQAKD

Sequences:

>Translated_868_residues
MLVGDLHTSIQFGQNFNPFTATVNSLVETITFIFFNTITLGTYGSLEILAKKNKINNLERVQKQMQEELSNFIQKWNDLE
SRLATVREEILNKTQGATFISEENLTTLEIETKNLKRQFSLLFPDSDLSISFANFLKNLITNFLTLGIYSAYQNSLLNKK
VSLLIKQNNYIKDKFQRDNEQKEHQILSNIKIAKSFVSWQKGLQAYSQNPHIIENEISEIRQKLIEDEACLRKLESDKKN
WETLHIDLTRLQEQCVKLDSQRLALKKVYADVFEQMTYEKTLEVIGQDKAKVKQLQQKLDQISRIKKQSGTSILGQLKPI
NPSDKKTLDQYGIVLADEEVQGDYGLNSNDDEENLFTDYVKRNEKTVTPEKFINESLTYILDKMLKLGNDSTSNVKFNDS
EMIYLDPDYLYSKMAIYQLLVLDVLEHGAIVRDCQGIKLKIGRASELEMRPSNPAQVGTFENGRFGSKIILRNEDPFGPV
SGTAGLQYGIDPVRAKRIWILLTEEEQQYLYYWLMDPFFEEGSQESKSLREFVTRGDKKRVALVNLVYDHVCDIAASIMK
NFEKHTGVVWQEKMTNDKPLVTPYKKVSINILDQIEDSAPIVAWQMNIEILAKYPLLYTALQEAQADHSILQMMQMIPGY
LQNPLNKAYAAQWKSDDKIKGLSEQYYGSHELLEGYVYDTSPRGCLFSNLLAIIMTNENYVNKRYLKFLKEAVADCLDNE
ETAKEFKDRIKQDYHWSLKQYQKWLRGESIEMISEYSDIEIELTARLIGVKIGVFVLGQNTALDESGAMIPAGQINYFGP
NTKEVYYLYNHPSVTYYGLFSKYHKGENLKTYLSSFDENVFGEGIVERIESTVNKLHLYWRLLAQAKD
>Mature_868_residues
MLVGDLHTSIQFGQNFNPFTATVNSLVETITFIFFNTITLGTYGSLEILAKKNKINNLERVQKQMQEELSNFIQKWNDLE
SRLATVREEILNKTQGATFISEENLTTLEIETKNLKRQFSLLFPDSDLSISFANFLKNLITNFLTLGIYSAYQNSLLNKK
VSLLIKQNNYIKDKFQRDNEQKEHQILSNIKIAKSFVSWQKGLQAYSQNPHIIENEISEIRQKLIEDEACLRKLESDKKN
WETLHIDLTRLQEQCVKLDSQRLALKKVYADVFEQMTYEKTLEVIGQDKAKVKQLQQKLDQISRIKKQSGTSILGQLKPI
NPSDKKTLDQYGIVLADEEVQGDYGLNSNDDEENLFTDYVKRNEKTVTPEKFINESLTYILDKMLKLGNDSTSNVKFNDS
EMIYLDPDYLYSKMAIYQLLVLDVLEHGAIVRDCQGIKLKIGRASELEMRPSNPAQVGTFENGRFGSKIILRNEDPFGPV
SGTAGLQYGIDPVRAKRIWILLTEEEQQYLYYWLMDPFFEEGSQESKSLREFVTRGDKKRVALVNLVYDHVCDIAASIMK
NFEKHTGVVWQEKMTNDKPLVTPYKKVSINILDQIEDSAPIVAWQMNIEILAKYPLLYTALQEAQADHSILQMMQMIPGY
LQNPLNKAYAAQWKSDDKIKGLSEQYYGSHELLEGYVYDTSPRGCLFSNLLAIIMTNENYVNKRYLKFLKEAVADCLDNE
ETAKEFKDRIKQDYHWSLKQYQKWLRGESIEMISEYSDIEIELTARLIGVKIGVFVLGQNTALDESGAMIPAGQINYFGP
NTKEVYYLYNHPSVTYYGLFSKYHKGENLKTYLSSFDENVFGEGIVERIESTVNKLHLYWRLLAQAKD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 100181; Mature: 100181

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVGDLHTSIQFGQNFNPFTATVNSLVETITFIFFNTITLGTYGSLEILAKKNKINNLER
CCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHCCHHHH
VQKQMQEELSNFIQKWNDLESRLATVREEILNKTQGATFISEENLTTLEIETKNLKRQFS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEEEHHHHHHHHH
LLFPDSDLSISFANFLKNLITNFLTLGIYSAYQNSLLNKKVSLLIKQNNYIKDKFQRDNE
EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHCCCH
QKEHQILSNIKIAKSFVSWQKGLQAYSQNPHIIENEISEIRQKLIEDEACLRKLESDKKN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
WETLHIDLTRLQEQCVKLDSQRLALKKVYADVFEQMTYEKTLEVIGQDKAKVKQLQQKLD
CEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
QISRIKKQSGTSILGQLKPINPSDKKTLDQYGIVLADEEVQGDYGLNSNDDEENLFTDYV
HHHHHHHHCCCHHHHCCCCCCCCHHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHHH
KRNEKTVTPEKFINESLTYILDKMLKLGNDSTSNVKFNDSEMIYLDPDYLYSKMAIYQLL
HCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCEEEEECHHHHHHHHHHHHHH
VLDVLEHGAIVRDCQGIKLKIGRASELEMRPSNPAQVGTFENGRFGSKIILRNEDPFGPV
HHHHHHCCCCEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
SGTAGLQYGIDPVRAKRIWILLTEEEQQYLYYWLMDPFFEEGSQESKSLREFVTRGDKKR
CCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCHHHHCCCHHHHHHHHHHHCCCCCH
VALVNLVYDHVCDIAASIMKNFEKHTGVVWQEKMTNDKPLVTPYKKVSINILDQIEDSAP
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHCCCCCCCCCCHHHHHHHHHHHCCCCCC
IVAWQMNIEILAKYPLLYTALQEAQADHSILQMMQMIPGYLQNPLNKAYAAQWKSDDKIK
EEEEEECEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC
GLSEQYYGSHELLEGYVYDTSPRGCLFSNLLAIIMTNENYVNKRYLKFLKEAVADCLDNE
CCHHHHCCCHHHHHCEEECCCCCHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHCCH
ETAKEFKDRIKQDYHWSLKQYQKWLRGESIEMISEYSDIEIELTARLIGVKIGVFVLGQN
HHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHCCCCCEEEEEHHHHHEEEEEEEEECC
TALDESGAMIPAGQINYFGPNTKEVYYLYNHPSVTYYGLFSKYHKGENLKTYLSSFDENV
CCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCEEEEHHHHHHCCCCHHHHHHHHHCCCH
FGEGIVERIESTVNKLHLYWRLLAQAKD
HHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLVGDLHTSIQFGQNFNPFTATVNSLVETITFIFFNTITLGTYGSLEILAKKNKINNLER
CCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHCCHHHH
VQKQMQEELSNFIQKWNDLESRLATVREEILNKTQGATFISEENLTTLEIETKNLKRQFS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEEEHHHHHHHHH
LLFPDSDLSISFANFLKNLITNFLTLGIYSAYQNSLLNKKVSLLIKQNNYIKDKFQRDNE
EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHCCCH
QKEHQILSNIKIAKSFVSWQKGLQAYSQNPHIIENEISEIRQKLIEDEACLRKLESDKKN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
WETLHIDLTRLQEQCVKLDSQRLALKKVYADVFEQMTYEKTLEVIGQDKAKVKQLQQKLD
CEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
QISRIKKQSGTSILGQLKPINPSDKKTLDQYGIVLADEEVQGDYGLNSNDDEENLFTDYV
HHHHHHHHCCCHHHHCCCCCCCCHHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHHH
KRNEKTVTPEKFINESLTYILDKMLKLGNDSTSNVKFNDSEMIYLDPDYLYSKMAIYQLL
HCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCEEEEECHHHHHHHHHHHHHH
VLDVLEHGAIVRDCQGIKLKIGRASELEMRPSNPAQVGTFENGRFGSKIILRNEDPFGPV
HHHHHHCCCCEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
SGTAGLQYGIDPVRAKRIWILLTEEEQQYLYYWLMDPFFEEGSQESKSLREFVTRGDKKR
CCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCHHHHCCCHHHHHHHHHHHCCCCCH
VALVNLVYDHVCDIAASIMKNFEKHTGVVWQEKMTNDKPLVTPYKKVSINILDQIEDSAP
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHCCCCCCCCCCHHHHHHHHHHHCCCCCC
IVAWQMNIEILAKYPLLYTALQEAQADHSILQMMQMIPGYLQNPLNKAYAAQWKSDDKIK
EEEEEECEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC
GLSEQYYGSHELLEGYVYDTSPRGCLFSNLLAIIMTNENYVNKRYLKFLKEAVADCLDNE
CCHHHHCCCHHHHHCEEECCCCCHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHCCH
ETAKEFKDRIKQDYHWSLKQYQKWLRGESIEMISEYSDIEIELTARLIGVKIGVFVLGQN
HHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHCCCCCEEEEEHHHHHEEEEEEEEECC
TALDESGAMIPAGQINYFGPNTKEVYYLYNHPSVTYYGLFSKYHKGENLKTYLSSFDENV
CCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCEEEEHHHHHHCCCCHHHHHHHHHCCCH
FGEGIVERIESTVNKLHLYWRLLAQAKD
HHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA