| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46446673
Identifier: 46446673
GI number: 46446673
Start: 1235690
End: 1238296
Strand: Reverse
Name: 46446673
Synonym: pc1039
Alternate gene names: NA
Gene position: 1238296-1235690 (Counterclockwise)
Preceding gene: 46446675
Following gene: 46446672
Centisome position: 51.29
GC content: 32.22
Gene sequence:
>2607_bases ATGTTGGTTGGTGATCTACACACATCTATTCAATTTGGACAAAATTTTAATCCTTTCACAGCAACCGTCAATTCACTTGT GGAGACGATAACTTTTATATTTTTTAATACCATCACCCTAGGTACTTACGGTAGTTTGGAAATTTTAGCGAAAAAAAATA AGATAAATAATCTTGAACGCGTGCAAAAACAAATGCAAGAGGAATTATCTAATTTCATCCAGAAATGGAATGATCTAGAA AGCCGCTTAGCAACTGTTCGTGAAGAAATTTTAAATAAAACTCAAGGTGCGACTTTCATTTCAGAGGAAAATTTAACTAC CTTAGAAATCGAAACTAAAAACTTAAAAAGACAATTTAGCTTATTATTCCCAGATTCAGATTTATCTATCAGTTTTGCTA ATTTTTTAAAAAATTTAATAACAAATTTCTTAACTTTAGGTATTTACAGTGCCTATCAAAATTCTTTATTAAATAAAAAA GTTTCGCTTTTGATAAAGCAAAATAATTACATTAAAGATAAATTTCAGAGGGATAACGAGCAAAAAGAGCATCAAATTTT ATCAAATATAAAAATCGCAAAATCATTTGTAAGTTGGCAAAAAGGTTTACAAGCTTATAGCCAAAATCCCCATATCATAG AAAATGAAATTTCAGAAATTAGACAAAAATTAATTGAAGACGAAGCTTGTTTAAGGAAACTAGAATCTGATAAAAAGAAC TGGGAAACGCTTCATATTGATTTAACAAGATTGCAGGAGCAGTGCGTCAAACTGGACAGCCAACGTTTAGCATTAAAAAA AGTCTATGCAGACGTTTTTGAACAAATGACTTATGAAAAAACTTTAGAAGTTATTGGACAAGATAAGGCTAAAGTAAAGC AATTACAGCAAAAATTAGACCAAATTTCTCGTATAAAAAAACAGTCAGGAACGTCTATTCTTGGGCAGTTAAAACCGATA AATCCCTCAGACAAAAAGACATTAGATCAGTATGGAATCGTTTTAGCTGATGAAGAAGTACAAGGAGATTATGGTTTAAA TAGTAATGATGATGAAGAGAATTTGTTTACAGATTACGTTAAACGAAATGAAAAAACAGTGACTCCGGAGAAATTCATAA ATGAAAGTTTGACATATATTTTAGACAAAATGCTTAAATTAGGCAATGACTCAACATCGAATGTTAAATTTAATGATAGT GAAATGATTTATCTAGATCCAGACTATTTATATAGTAAAATGGCTATTTATCAACTTCTCGTATTAGATGTATTAGAGCA TGGTGCTATTGTCAGAGACTGTCAAGGAATAAAATTGAAAATCGGAAGAGCTTCTGAGCTAGAAATGAGGCCTTCTAATC CTGCTCAAGTAGGAACTTTTGAAAATGGCCGCTTCGGAAGCAAAATCATTTTGAGAAATGAAGACCCATTTGGCCCAGTT TCGGGGACGGCAGGTTTACAATATGGAATAGATCCTGTAAGAGCAAAACGAATTTGGATTTTGTTGACTGAAGAAGAGCA ACAATATCTTTATTATTGGCTTATGGATCCTTTTTTCGAAGAAGGAAGTCAAGAAAGTAAAAGTTTGAGAGAATTTGTTA CAAGGGGGGATAAAAAAAGAGTTGCGCTTGTTAATCTTGTTTATGACCATGTTTGTGATATAGCTGCCTCTATTATGAAA AATTTTGAAAAGCATACAGGAGTCGTTTGGCAGGAAAAAATGACAAATGATAAACCTCTTGTAACTCCTTATAAGAAAGT AAGCATAAACATTTTGGATCAAATCGAAGACTCTGCACCTATTGTAGCATGGCAAATGAATATTGAAATTCTTGCGAAAT ATCCTTTGCTTTATACTGCTTTGCAAGAGGCTCAAGCAGATCATTCTATCTTACAAATGATGCAAATGATCCCTGGTTAT TTGCAAAATCCTTTAAATAAAGCATATGCAGCTCAATGGAAGAGTGATGATAAAATCAAAGGACTCTCTGAACAATACTA CGGGAGTCATGAATTGTTAGAAGGCTATGTTTACGATACTTCTCCTCGCGGGTGTTTGTTCTCCAATCTCTTAGCTATCA TTATGACAAATGAAAATTATGTTAATAAAAGATATTTAAAATTTTTAAAAGAAGCGGTGGCAGATTGTTTAGATAACGAA GAAACAGCAAAAGAATTTAAAGATAGAATTAAACAAGATTATCATTGGTCTCTCAAACAATACCAAAAGTGGTTGAGAGG AGAATCGATAGAAATGATTTCCGAATATTCTGATATTGAGATTGAATTGACTGCTCGATTAATCGGGGTGAAAATAGGTG TATTTGTGCTTGGCCAAAATACGGCTCTTGATGAATCTGGAGCTATGATTCCAGCTGGTCAAATCAATTACTTTGGACCA AACACAAAAGAAGTTTATTACCTTTATAATCATCCGAGTGTCACTTACTATGGATTATTTTCAAAATATCATAAAGGTGA GAATTTAAAAACTTATCTAAGTTCATTTGATGAAAATGTATTTGGAGAGGGGATTGTCGAAAGGATTGAAAGCACTGTTA ATAAATTGCACCTTTATTGGAGATTGTTAGCTCAAGCTAAAGATTAA
Upstream 100 bases:
>100_bases TAGTGTTTAATTTTTATTTTTAATATGCATTATATTAAGAATTTATTGGATTTTCAAAATTATTTAATTTAATTAATTTT TCCAGTTAAGAAGGGATAAC
Downstream 100 bases:
>100_bases TTGCTTTAGGGTGTCTAAGGTATGAGAGTATAAATTAATACGAATTATCATAAGTATATAGGAATTTATGAGTAACTTGA CAGTACAACCAAGCAGTTTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 868; Mature: 868
Protein sequence:
>868_residues MLVGDLHTSIQFGQNFNPFTATVNSLVETITFIFFNTITLGTYGSLEILAKKNKINNLERVQKQMQEELSNFIQKWNDLE SRLATVREEILNKTQGATFISEENLTTLEIETKNLKRQFSLLFPDSDLSISFANFLKNLITNFLTLGIYSAYQNSLLNKK VSLLIKQNNYIKDKFQRDNEQKEHQILSNIKIAKSFVSWQKGLQAYSQNPHIIENEISEIRQKLIEDEACLRKLESDKKN WETLHIDLTRLQEQCVKLDSQRLALKKVYADVFEQMTYEKTLEVIGQDKAKVKQLQQKLDQISRIKKQSGTSILGQLKPI NPSDKKTLDQYGIVLADEEVQGDYGLNSNDDEENLFTDYVKRNEKTVTPEKFINESLTYILDKMLKLGNDSTSNVKFNDS EMIYLDPDYLYSKMAIYQLLVLDVLEHGAIVRDCQGIKLKIGRASELEMRPSNPAQVGTFENGRFGSKIILRNEDPFGPV SGTAGLQYGIDPVRAKRIWILLTEEEQQYLYYWLMDPFFEEGSQESKSLREFVTRGDKKRVALVNLVYDHVCDIAASIMK NFEKHTGVVWQEKMTNDKPLVTPYKKVSINILDQIEDSAPIVAWQMNIEILAKYPLLYTALQEAQADHSILQMMQMIPGY LQNPLNKAYAAQWKSDDKIKGLSEQYYGSHELLEGYVYDTSPRGCLFSNLLAIIMTNENYVNKRYLKFLKEAVADCLDNE ETAKEFKDRIKQDYHWSLKQYQKWLRGESIEMISEYSDIEIELTARLIGVKIGVFVLGQNTALDESGAMIPAGQINYFGP NTKEVYYLYNHPSVTYYGLFSKYHKGENLKTYLSSFDENVFGEGIVERIESTVNKLHLYWRLLAQAKD
Sequences:
>Translated_868_residues MLVGDLHTSIQFGQNFNPFTATVNSLVETITFIFFNTITLGTYGSLEILAKKNKINNLERVQKQMQEELSNFIQKWNDLE SRLATVREEILNKTQGATFISEENLTTLEIETKNLKRQFSLLFPDSDLSISFANFLKNLITNFLTLGIYSAYQNSLLNKK VSLLIKQNNYIKDKFQRDNEQKEHQILSNIKIAKSFVSWQKGLQAYSQNPHIIENEISEIRQKLIEDEACLRKLESDKKN WETLHIDLTRLQEQCVKLDSQRLALKKVYADVFEQMTYEKTLEVIGQDKAKVKQLQQKLDQISRIKKQSGTSILGQLKPI NPSDKKTLDQYGIVLADEEVQGDYGLNSNDDEENLFTDYVKRNEKTVTPEKFINESLTYILDKMLKLGNDSTSNVKFNDS EMIYLDPDYLYSKMAIYQLLVLDVLEHGAIVRDCQGIKLKIGRASELEMRPSNPAQVGTFENGRFGSKIILRNEDPFGPV SGTAGLQYGIDPVRAKRIWILLTEEEQQYLYYWLMDPFFEEGSQESKSLREFVTRGDKKRVALVNLVYDHVCDIAASIMK NFEKHTGVVWQEKMTNDKPLVTPYKKVSINILDQIEDSAPIVAWQMNIEILAKYPLLYTALQEAQADHSILQMMQMIPGY LQNPLNKAYAAQWKSDDKIKGLSEQYYGSHELLEGYVYDTSPRGCLFSNLLAIIMTNENYVNKRYLKFLKEAVADCLDNE ETAKEFKDRIKQDYHWSLKQYQKWLRGESIEMISEYSDIEIELTARLIGVKIGVFVLGQNTALDESGAMIPAGQINYFGP NTKEVYYLYNHPSVTYYGLFSKYHKGENLKTYLSSFDENVFGEGIVERIESTVNKLHLYWRLLAQAKD >Mature_868_residues MLVGDLHTSIQFGQNFNPFTATVNSLVETITFIFFNTITLGTYGSLEILAKKNKINNLERVQKQMQEELSNFIQKWNDLE SRLATVREEILNKTQGATFISEENLTTLEIETKNLKRQFSLLFPDSDLSISFANFLKNLITNFLTLGIYSAYQNSLLNKK VSLLIKQNNYIKDKFQRDNEQKEHQILSNIKIAKSFVSWQKGLQAYSQNPHIIENEISEIRQKLIEDEACLRKLESDKKN WETLHIDLTRLQEQCVKLDSQRLALKKVYADVFEQMTYEKTLEVIGQDKAKVKQLQQKLDQISRIKKQSGTSILGQLKPI NPSDKKTLDQYGIVLADEEVQGDYGLNSNDDEENLFTDYVKRNEKTVTPEKFINESLTYILDKMLKLGNDSTSNVKFNDS EMIYLDPDYLYSKMAIYQLLVLDVLEHGAIVRDCQGIKLKIGRASELEMRPSNPAQVGTFENGRFGSKIILRNEDPFGPV SGTAGLQYGIDPVRAKRIWILLTEEEQQYLYYWLMDPFFEEGSQESKSLREFVTRGDKKRVALVNLVYDHVCDIAASIMK NFEKHTGVVWQEKMTNDKPLVTPYKKVSINILDQIEDSAPIVAWQMNIEILAKYPLLYTALQEAQADHSILQMMQMIPGY LQNPLNKAYAAQWKSDDKIKGLSEQYYGSHELLEGYVYDTSPRGCLFSNLLAIIMTNENYVNKRYLKFLKEAVADCLDNE ETAKEFKDRIKQDYHWSLKQYQKWLRGESIEMISEYSDIEIELTARLIGVKIGVFVLGQNTALDESGAMIPAGQINYFGP NTKEVYYLYNHPSVTYYGLFSKYHKGENLKTYLSSFDENVFGEGIVERIESTVNKLHLYWRLLAQAKD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 100181; Mature: 100181
Theoretical pI: Translated: 5.56; Mature: 5.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLVGDLHTSIQFGQNFNPFTATVNSLVETITFIFFNTITLGTYGSLEILAKKNKINNLER CCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHCCHHHH VQKQMQEELSNFIQKWNDLESRLATVREEILNKTQGATFISEENLTTLEIETKNLKRQFS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEEEHHHHHHHHH LLFPDSDLSISFANFLKNLITNFLTLGIYSAYQNSLLNKKVSLLIKQNNYIKDKFQRDNE EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHCCCH QKEHQILSNIKIAKSFVSWQKGLQAYSQNPHIIENEISEIRQKLIEDEACLRKLESDKKN HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC WETLHIDLTRLQEQCVKLDSQRLALKKVYADVFEQMTYEKTLEVIGQDKAKVKQLQQKLD CEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH QISRIKKQSGTSILGQLKPINPSDKKTLDQYGIVLADEEVQGDYGLNSNDDEENLFTDYV HHHHHHHHCCCHHHHCCCCCCCCHHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHHH KRNEKTVTPEKFINESLTYILDKMLKLGNDSTSNVKFNDSEMIYLDPDYLYSKMAIYQLL HCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCEEEEECHHHHHHHHHHHHHH VLDVLEHGAIVRDCQGIKLKIGRASELEMRPSNPAQVGTFENGRFGSKIILRNEDPFGPV HHHHHHCCCCEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC SGTAGLQYGIDPVRAKRIWILLTEEEQQYLYYWLMDPFFEEGSQESKSLREFVTRGDKKR CCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCHHHHCCCHHHHHHHHHHHCCCCCH VALVNLVYDHVCDIAASIMKNFEKHTGVVWQEKMTNDKPLVTPYKKVSINILDQIEDSAP HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHCCCCCCCCCCHHHHHHHHHHHCCCCCC IVAWQMNIEILAKYPLLYTALQEAQADHSILQMMQMIPGYLQNPLNKAYAAQWKSDDKIK EEEEEECEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC GLSEQYYGSHELLEGYVYDTSPRGCLFSNLLAIIMTNENYVNKRYLKFLKEAVADCLDNE CCHHHHCCCHHHHHCEEECCCCCHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHCCH ETAKEFKDRIKQDYHWSLKQYQKWLRGESIEMISEYSDIEIELTARLIGVKIGVFVLGQN HHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHCCCCCEEEEEHHHHHEEEEEEEEECC TALDESGAMIPAGQINYFGPNTKEVYYLYNHPSVTYYGLFSKYHKGENLKTYLSSFDENV CCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCEEEEHHHHHHCCCCHHHHHHHHHCCCH FGEGIVERIESTVNKLHLYWRLLAQAKD HHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLVGDLHTSIQFGQNFNPFTATVNSLVETITFIFFNTITLGTYGSLEILAKKNKINNLER CCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHCCHHHH VQKQMQEELSNFIQKWNDLESRLATVREEILNKTQGATFISEENLTTLEIETKNLKRQFS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEEEHHHHHHHHH LLFPDSDLSISFANFLKNLITNFLTLGIYSAYQNSLLNKKVSLLIKQNNYIKDKFQRDNE EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHCCCH QKEHQILSNIKIAKSFVSWQKGLQAYSQNPHIIENEISEIRQKLIEDEACLRKLESDKKN HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC WETLHIDLTRLQEQCVKLDSQRLALKKVYADVFEQMTYEKTLEVIGQDKAKVKQLQQKLD CEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH QISRIKKQSGTSILGQLKPINPSDKKTLDQYGIVLADEEVQGDYGLNSNDDEENLFTDYV HHHHHHHHCCCHHHHCCCCCCCCHHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHHH KRNEKTVTPEKFINESLTYILDKMLKLGNDSTSNVKFNDSEMIYLDPDYLYSKMAIYQLL HCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCEEEEECHHHHHHHHHHHHHH VLDVLEHGAIVRDCQGIKLKIGRASELEMRPSNPAQVGTFENGRFGSKIILRNEDPFGPV HHHHHHCCCCEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC SGTAGLQYGIDPVRAKRIWILLTEEEQQYLYYWLMDPFFEEGSQESKSLREFVTRGDKKR CCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCHHHHCCCHHHHHHHHHHHCCCCCH VALVNLVYDHVCDIAASIMKNFEKHTGVVWQEKMTNDKPLVTPYKKVSINILDQIEDSAP HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHCCCCCCCCCCHHHHHHHHHHHCCCCCC IVAWQMNIEILAKYPLLYTALQEAQADHSILQMMQMIPGYLQNPLNKAYAAQWKSDDKIK EEEEEECEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC GLSEQYYGSHELLEGYVYDTSPRGCLFSNLLAIIMTNENYVNKRYLKFLKEAVADCLDNE CCHHHHCCCHHHHHCEEECCCCCHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHCCH ETAKEFKDRIKQDYHWSLKQYQKWLRGESIEMISEYSDIEIELTARLIGVKIGVFVLGQN HHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHCCCCCEEEEEHHHHHEEEEEEEEECC TALDESGAMIPAGQINYFGPNTKEVYYLYNHPSVTYYGLFSKYHKGENLKTYLSSFDENV CCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCEEEEHHHHHHCCCCHHHHHHHHHCCCH FGEGIVERIESTVNKLHLYWRLLAQAKD HHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA