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The map label for this gene is yhgF [C]

Identifier: 46446608

GI number: 46446608

Start: 1171399

End: 1173663

Strand: Reverse

Name: yhgF [C]

Synonym: pc0974

Alternate gene names: 46446608

Gene position: 1173663-1171399 (Counterclockwise)

Preceding gene: 46446609

Following gene: 46446607

Centisome position: 48.61

GC content: 38.63

Gene sequence:

>2265_bases
ATGTTAGAACAAACGCGCCAAGTATTTATGATTCAAATCGCTCAAGAACTTTCCCTTTCTGTCCATTCTGTCAAAGCTGT
AGTTGATTTATTGGAAGCGGGAAATACGATTCCTTTTATCGCCCGTTATCGAAAAGAAGCGACCAGCAACCTAGATGAAG
TTCAAATTAAAAACATTCAAGAACGACACAATTATTTAAAAGAATTAGAAGAAAGACGGCAAACAATTCTTACTTCGATT
GAATCGCAAGGAAAACTGACAGATGCCCTACGAGAACAAATTTTAGCTTGTAATGTCAAAACAATTTTAGAAGATCTTTA
CTTACCCTATAAACCTAAACGACGCACGAGAGCGATGATTGCTCGAGAGAAGGGACTAGAGCCTTTAGCTCTTTTAATTT
TAAGTCAACCTCTTCAAGGAAATCCGCAAGAAGCAGCCAGTTCATTTATTAATGAAGGAAAAGGAGTTTTGGATGTCAAC
CAAGCGATTTCCGGAGCTCTTGATATTGTAGCTGAAATGATTGCTGAAGAGGCTGCTGTTCGTTCGTATGTTCGAGAAAT
ATTTGCAACAGAAGGTGTTGTTGTTTCAAAAGTGCGTTCTAGTGTCAAAGGACCGACAAAGTTTGAGCAATATTATGATT
TTAAAGAAAAAGTTAAAACAATTCCTTCTCATCGCTATTTAGCTATTCGACGCGGTGAAAAAGAAGATATCCTCGATTTT
TCAATTGAAATAGAGGAATTTTCTGTCATTTCACAAATTGCAAAATTAGTAAATCTTAAACCAGCTTCTCCCTTTAGTTC
TCATTTATCACAAGCAGTTGAAGATTCTTTTAAAAGGCTTCTTTATCCTTCTGTAGAAACAGATGTCCGTTTAGATTTGA
AATTAGCCTCGGATCGAGCGGCTGTAGATATTTTTGCCAATAACTTACGTCATCTTTTATTAGCTTCTCCCCTAGGTGGA
AAGTCTGTTATTGGAATCGATCCCGGCATTCGAACAGGCTGTAAATGTGTGGCTGTCGATGAGACAGGTAAATATTTAAA
TACGATCACCATTTATCCTTCTCAAGGAGCAAGAGCGCATCAACAAGCAGAAAAAGACTTAGCGACTTTTATTCAGTTCT
ACAAACCTTATGCGGTTGCGATTGGTAATGGAACGGCAGGTCGAGAAACAGAAAGTTTTGTCAAACAACTGATCAAAAAA
GATGCTTTAACGGGCACCCTGGTTGTCACTGTTAATGAATCGGGAGCAAGTGTTTACAGTGCCTCTGATGTCGCAAGGGA
AGAATTTCCCGATTTAGACTTGACAATAAGAGGGGCCATTTCAATCGCTCGCCGATTACAAGACCCTCTGGCTGAACTTG
TCAAAATTGATCCAAAATCAATTGGAGTTGGACAATATCAACATGATGTTCATCAATCTCTTTTACAAGACCAACTTGTT
CATGTAGTGGAAAGTTGTGTAAATCATGTAGGAGTCGATTTAAATACAGCGAGCGCCCCTTTACTATCTTATGTTTCTGG
GATCGGTCAGTCGCTTGCTCAAAAAATGGTTAAATATCGAGAATCTCATGGCGCTTTTAAAAGTCGTCAGCAGCTTAAAA
AGGTCCCTGGATTTGGAGCTAAAACCTTTGAACAAGCAGCGGGATTTTTGCGTATCAGAAATGGAGAATATCCTTTAGAC
TCTTCAGCAGTTCATCCGGAGCGTTATGAATTAGTAGAACAAATTGCTAAAGATTTAAACCTCTCCTTGAGAGATTTAAT
TGATCATCCCGAATTTGTCGCTCAAATTGATTTAAAGAAGTATATGAGTGCCTCTGTAGGAGAGTTGACCTTAAAAGATA
TCCTGCAAGAATTAAAAAAGCCAGGTCGAGATCCGCGAGCAACTTTTGAACCTCCCAGCTTTCGCGAGGATATTTTATCT
ATTCAAGATCTTAAACCAGGGCTCCATTTAGAAGGAATAGTGACTAACGTAACAGCTTTTGGGGCTTTTATCGATATAGG
TGTGCATCAAGATGGGTTAATTCATTTATCAGAGCTTTCCGATCACTATGTCAGCCATCCCAATGATGTGGTGAAAGCTG
GAGATAAGCTAAAAGTAGAAGTTTTAACAATTGATGTTGAACGTAAGCGCATTTCTTTAACGGCAAGAGTAGGCCAAAAT
CGCTCTACTAAAGAGCCAATACAAGTTGCTAAAGAGTCTTCAAAGCCAAAAAGGCAAACCAGATCCCAAAGTAATTTTAT
TTCTAATCCGTTTGCTTCCCTTTAA

Upstream 100 bases:

>100_bases
TTTAGCTAAGTAATATTTGAGGCCATTTTTTTTCTAGATTGCAGTTAACAATAAGTACTGTTAAACTTTGACCTCCTTAT
GATTTTATGAAGAGAGGTTT

Downstream 100 bases:

>100_bases
AAATCCCCTGTTGCATGTTTGGAAAAAAGCTGTTAAAAGAGGTTTTTGAAGATTAAAAAATAGGAGAAATTGCGATGGAT
AACCAACCAAAAATATTAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 754; Mature: 754

Protein sequence:

>754_residues
MLEQTRQVFMIQIAQELSLSVHSVKAVVDLLEAGNTIPFIARYRKEATSNLDEVQIKNIQERHNYLKELEERRQTILTSI
ESQGKLTDALREQILACNVKTILEDLYLPYKPKRRTRAMIAREKGLEPLALLILSQPLQGNPQEAASSFINEGKGVLDVN
QAISGALDIVAEMIAEEAAVRSYVREIFATEGVVVSKVRSSVKGPTKFEQYYDFKEKVKTIPSHRYLAIRRGEKEDILDF
SIEIEEFSVISQIAKLVNLKPASPFSSHLSQAVEDSFKRLLYPSVETDVRLDLKLASDRAAVDIFANNLRHLLLASPLGG
KSVIGIDPGIRTGCKCVAVDETGKYLNTITIYPSQGARAHQQAEKDLATFIQFYKPYAVAIGNGTAGRETESFVKQLIKK
DALTGTLVVTVNESGASVYSASDVAREEFPDLDLTIRGAISIARRLQDPLAELVKIDPKSIGVGQYQHDVHQSLLQDQLV
HVVESCVNHVGVDLNTASAPLLSYVSGIGQSLAQKMVKYRESHGAFKSRQQLKKVPGFGAKTFEQAAGFLRIRNGEYPLD
SSAVHPERYELVEQIAKDLNLSLRDLIDHPEFVAQIDLKKYMSASVGELTLKDILQELKKPGRDPRATFEPPSFREDILS
IQDLKPGLHLEGIVTNVTAFGAFIDIGVHQDGLIHLSELSDHYVSHPNDVVKAGDKLKVEVLTIDVERKRISLTARVGQN
RSTKEPIQVAKESSKPKRQTRSQSNFISNPFASL

Sequences:

>Translated_754_residues
MLEQTRQVFMIQIAQELSLSVHSVKAVVDLLEAGNTIPFIARYRKEATSNLDEVQIKNIQERHNYLKELEERRQTILTSI
ESQGKLTDALREQILACNVKTILEDLYLPYKPKRRTRAMIAREKGLEPLALLILSQPLQGNPQEAASSFINEGKGVLDVN
QAISGALDIVAEMIAEEAAVRSYVREIFATEGVVVSKVRSSVKGPTKFEQYYDFKEKVKTIPSHRYLAIRRGEKEDILDF
SIEIEEFSVISQIAKLVNLKPASPFSSHLSQAVEDSFKRLLYPSVETDVRLDLKLASDRAAVDIFANNLRHLLLASPLGG
KSVIGIDPGIRTGCKCVAVDETGKYLNTITIYPSQGARAHQQAEKDLATFIQFYKPYAVAIGNGTAGRETESFVKQLIKK
DALTGTLVVTVNESGASVYSASDVAREEFPDLDLTIRGAISIARRLQDPLAELVKIDPKSIGVGQYQHDVHQSLLQDQLV
HVVESCVNHVGVDLNTASAPLLSYVSGIGQSLAQKMVKYRESHGAFKSRQQLKKVPGFGAKTFEQAAGFLRIRNGEYPLD
SSAVHPERYELVEQIAKDLNLSLRDLIDHPEFVAQIDLKKYMSASVGELTLKDILQELKKPGRDPRATFEPPSFREDILS
IQDLKPGLHLEGIVTNVTAFGAFIDIGVHQDGLIHLSELSDHYVSHPNDVVKAGDKLKVEVLTIDVERKRISLTARVGQN
RSTKEPIQVAKESSKPKRQTRSQSNFISNPFASL
>Mature_754_residues
MLEQTRQVFMIQIAQELSLSVHSVKAVVDLLEAGNTIPFIARYRKEATSNLDEVQIKNIQERHNYLKELEERRQTILTSI
ESQGKLTDALREQILACNVKTILEDLYLPYKPKRRTRAMIAREKGLEPLALLILSQPLQGNPQEAASSFINEGKGVLDVN
QAISGALDIVAEMIAEEAAVRSYVREIFATEGVVVSKVRSSVKGPTKFEQYYDFKEKVKTIPSHRYLAIRRGEKEDILDF
SIEIEEFSVISQIAKLVNLKPASPFSSHLSQAVEDSFKRLLYPSVETDVRLDLKLASDRAAVDIFANNLRHLLLASPLGG
KSVIGIDPGIRTGCKCVAVDETGKYLNTITIYPSQGARAHQQAEKDLATFIQFYKPYAVAIGNGTAGRETESFVKQLIKK
DALTGTLVVTVNESGASVYSASDVAREEFPDLDLTIRGAISIARRLQDPLAELVKIDPKSIGVGQYQHDVHQSLLQDQLV
HVVESCVNHVGVDLNTASAPLLSYVSGIGQSLAQKMVKYRESHGAFKSRQQLKKVPGFGAKTFEQAAGFLRIRNGEYPLD
SSAVHPERYELVEQIAKDLNLSLRDLIDHPEFVAQIDLKKYMSASVGELTLKDILQELKKPGRDPRATFEPPSFREDILS
IQDLKPGLHLEGIVTNVTAFGAFIDIGVHQDGLIHLSELSDHYVSHPNDVVKAGDKLKVEVLTIDVERKRISLTARVGQN
RSTKEPIQVAKESSKPKRQTRSQSNFISNPFASL

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=785, Percent_Identity=33.5031847133758, Blast_Score=395, Evalue=1e-110,
Organism=Homo sapiens, GI27597090, Length=706, Percent_Identity=22.5212464589235, Blast_Score=103, Evalue=6e-22,
Organism=Escherichia coli, GI87082262, Length=722, Percent_Identity=47.9224376731302, Blast_Score=635, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=88, Percent_Identity=39.7727272727273, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17511129, Length=725, Percent_Identity=31.1724137931034, Blast_Score=244, Evalue=1e-64,
Organism=Caenorhabditis elegans, GI17552892, Length=374, Percent_Identity=28.0748663101604, Blast_Score=89, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6321552, Length=510, Percent_Identity=24.5098039215686, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI62484314, Length=768, Percent_Identity=32.5520833333333, Blast_Score=387, Evalue=1e-107,
Organism=Drosophila melanogaster, GI24640080, Length=729, Percent_Identity=20.5761316872428, Blast_Score=92, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 83734; Mature: 83734

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEQTRQVFMIQIAQELSLSVHSVKAVVDLLEAGNTIPFIARYRKEATSNLDEVQIKNIQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHH
ERHNYLKELEERRQTILTSIESQGKLTDALREQILACNVKTILEDLYLPYKPKRRTRAMI
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHH
AREKGLEPLALLILSQPLQGNPQEAASSFINEGKGVLDVNQAISGALDIVAEMIAEEAAV
HHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHH
RSYVREIFATEGVVVSKVRSSVKGPTKFEQYYDFKEKVKTIPSHRYLAIRRGEKEDILDF
HHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEE
SIEIEEFSVISQIAKLVNLKPASPFSSHLSQAVEDSFKRLLYPSVETDVRLDLKLASDRA
EEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCH
AVDIFANNLRHLLLASPLGGKSVIGIDPGIRTGCKCVAVDETGKYLNTITIYPSQGARAH
HHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEECCCCCEEEEEEEECCCCCHHH
QQAEKDLATFIQFYKPYAVAIGNGTAGRETESFVKQLIKKDALTGTLVVTVNESGASVYS
HHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEC
ASDVAREEFPDLDLTIRGAISIARRLQDPLAELVKIDPKSIGVGQYQHDVHQSLLQDQLV
HHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
HVVESCVNHVGVDLNTASAPLLSYVSGIGQSLAQKMVKYRESHGAFKSRQQLKKVPGFGA
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCH
KTFEQAAGFLRIRNGEYPLDSSAVHPERYELVEQIAKDLNLSLRDLIDHPEFVAQIDLKK
HHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHH
YMSASVGELTLKDILQELKKPGRDPRATFEPPSFREDILSIQDLKPGLHLEGIVTNVTAF
HHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
GAFIDIGVHQDGLIHLSELSDHYVSHPNDVVKAGDKLKVEVLTIDVERKRISLTARVGQN
HHHHEECCCCCCCEEHHHHHHHHHCCCHHHHHCCCCEEEEEEEEEECCHHEEEEEECCCC
RSTKEPIQVAKESSKPKRQTRSQSNFISNPFASL
CCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLEQTRQVFMIQIAQELSLSVHSVKAVVDLLEAGNTIPFIARYRKEATSNLDEVQIKNIQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHH
ERHNYLKELEERRQTILTSIESQGKLTDALREQILACNVKTILEDLYLPYKPKRRTRAMI
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHH
AREKGLEPLALLILSQPLQGNPQEAASSFINEGKGVLDVNQAISGALDIVAEMIAEEAAV
HHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHH
RSYVREIFATEGVVVSKVRSSVKGPTKFEQYYDFKEKVKTIPSHRYLAIRRGEKEDILDF
HHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEE
SIEIEEFSVISQIAKLVNLKPASPFSSHLSQAVEDSFKRLLYPSVETDVRLDLKLASDRA
EEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCH
AVDIFANNLRHLLLASPLGGKSVIGIDPGIRTGCKCVAVDETGKYLNTITIYPSQGARAH
HHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEECCCCCEEEEEEEECCCCCHHH
QQAEKDLATFIQFYKPYAVAIGNGTAGRETESFVKQLIKKDALTGTLVVTVNESGASVYS
HHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEC
ASDVAREEFPDLDLTIRGAISIARRLQDPLAELVKIDPKSIGVGQYQHDVHQSLLQDQLV
HHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
HVVESCVNHVGVDLNTASAPLLSYVSGIGQSLAQKMVKYRESHGAFKSRQQLKKVPGFGA
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCH
KTFEQAAGFLRIRNGEYPLDSSAVHPERYELVEQIAKDLNLSLRDLIDHPEFVAQIDLKK
HHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHH
YMSASVGELTLKDILQELKKPGRDPRATFEPPSFREDILSIQDLKPGLHLEGIVTNVTAF
HHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
GAFIDIGVHQDGLIHLSELSDHYVSHPNDVVKAGDKLKVEVLTIDVERKRISLTARVGQN
HHHHEECCCCCCCEEHHHHHHHHHCCCHHHHHCCCCEEEEEEEEEECCHHEEEEEECCCC
RSTKEPIQVAKESSKPKRQTRSQSNFISNPFASL
CCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]