| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46446519
Identifier: 46446519
GI number: 46446519
Start: 1069844
End: 1070581
Strand: Direct
Name: 46446519
Synonym: pc0885
Alternate gene names: NA
Gene position: 1069844-1070581 (Clockwise)
Preceding gene: 46446518
Following gene: 46446520
Centisome position: 44.31
GC content: 34.28
Gene sequence:
>738_bases TTGTATTTTATTTTATTTTTAAGCTTATTTTGCTGTGGACAAATGATTTCGGCAGCTACATTACATACAATTTTAGTGGC TGACACGATTCATGACATCAATTCCATTACGGTCCCAGATTTGGCAAGGTGGCAAAAAGAACTGCAGATGATTGCTCAAT CTACGCATATGATTTTAAAAGAGATAACTTTTGAAGGGAAACGTTTCCGCAAACAACTCATTGTTGATTATTTAAAAAAT TTTTCCGTTAATCATGACGACGCCGTAGTGTTCATTTTCTCTGGACATGGTTATCGAACGCGAGACAAAAAATCACCTTG GCCTTTTTTAATATTTGAGCTTGATAAGCATGGAATGGATTTAAAATGGATTGACGAAATTATTCGGTCTAAAAAACCCC GTTTTTCTTTAGTTTTAGGGGATTGTTGCAACAATTACATTGAAAAAGGCTTTTTAGGTGAGAATAAAAATATCTTTGTC AATTTACGTTTAGTAGAAACAGATCCTTCTGGTTACAACCAGTTATTTTGCCGAGCAAAAGGGCATATTATTGTTTGTAG CTGCAGTCCAGGAAATTTCTCTTACGGATCTCCTTTTGGAGGATTATATTCACAGTGTTTTCTCGTTAGCTTAAACAGAG AAATATCTCAAAAATTTCCTAGTTGGAAAAAAGTTTTAGAAAGAGCCAATGGTTACATTCAACAAGTGCAAATACCTGTT TGTGAAATCAACCATTGA
Upstream 100 bases:
>100_bases TTGGCCGTCTTAAAATCAACGATTCTGTTAGAAAAAACGACTGGGAAAATAACAAAATTTTTTAGTCATTCGCGGAATTC TTATGAAAAAAAATCCTTCT
Downstream 100 bases:
>100_bases TAACAATTTCTTGATAAATTAAATTTTTATTTTTCTTATCAAGGAGTACTTATGCGAAATACCACAAACTTTTTTTACAA AATTTGCTTTTTTGCCCTAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 245; Mature: 245
Protein sequence:
>245_residues MYFILFLSLFCCGQMISAATLHTILVADTIHDINSITVPDLARWQKELQMIAQSTHMILKEITFEGKRFRKQLIVDYLKN FSVNHDDAVVFIFSGHGYRTRDKKSPWPFLIFELDKHGMDLKWIDEIIRSKKPRFSLVLGDCCNNYIEKGFLGENKNIFV NLRLVETDPSGYNQLFCRAKGHIIVCSCSPGNFSYGSPFGGLYSQCFLVSLNREISQKFPSWKKVLERANGYIQQVQIPV CEINH
Sequences:
>Translated_245_residues MYFILFLSLFCCGQMISAATLHTILVADTIHDINSITVPDLARWQKELQMIAQSTHMILKEITFEGKRFRKQLIVDYLKN FSVNHDDAVVFIFSGHGYRTRDKKSPWPFLIFELDKHGMDLKWIDEIIRSKKPRFSLVLGDCCNNYIEKGFLGENKNIFV NLRLVETDPSGYNQLFCRAKGHIIVCSCSPGNFSYGSPFGGLYSQCFLVSLNREISQKFPSWKKVLERANGYIQQVQIPV CEINH >Mature_245_residues MYFILFLSLFCCGQMISAATLHTILVADTIHDINSITVPDLARWQKELQMIAQSTHMILKEITFEGKRFRKQLIVDYLKN FSVNHDDAVVFIFSGHGYRTRDKKSPWPFLIFELDKHGMDLKWIDEIIRSKKPRFSLVLGDCCNNYIEKGFLGENKNIFV NLRLVETDPSGYNQLFCRAKGHIIVCSCSPGNFSYGSPFGGLYSQCFLVSLNREISQKFPSWKKVLERANGYIQQVQIPV CEINH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28258; Mature: 28258
Theoretical pI: Translated: 8.48; Mature: 8.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 3.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYFILFLSLFCCGQMISAATLHTILVADTIHDINSITVPDLARWQKELQMIAQSTHMILK CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH EITFEGKRFRKQLIVDYLKNFSVNHDDAVVFIFSGHGYRTRDKKSPWPFLIFELDKHGMD HHHCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCC LKWIDEIIRSKKPRFSLVLGDCCNNYIEKGFLGENKNIFVNLRLVETDPSGYNQLFCRAK HHHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCCCCCEEEEEEEEEEECCCCCHHEEEEEC GHIIVCSCSPGNFSYGSPFGGLYSQCFLVSLNREISQKFPSWKKVLERANGYIQQVQIPV CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHCCCEEEEEEEE CEINH EECCC >Mature Secondary Structure MYFILFLSLFCCGQMISAATLHTILVADTIHDINSITVPDLARWQKELQMIAQSTHMILK CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH EITFEGKRFRKQLIVDYLKNFSVNHDDAVVFIFSGHGYRTRDKKSPWPFLIFELDKHGMD HHHCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCC LKWIDEIIRSKKPRFSLVLGDCCNNYIEKGFLGENKNIFVNLRLVETDPSGYNQLFCRAK HHHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCCCCCEEEEEEEEEEECCCCCHHEEEEEC GHIIVCSCSPGNFSYGSPFGGLYSQCFLVSLNREISQKFPSWKKVLERANGYIQQVQIPV CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHCCCEEEEEEEE CEINH EECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA