Definition Candidatus Protochlamydia amoebophila UWE25, complete genome.
Accession NC_005861
Length 2,414,465

Click here to switch to the map view.

The map label for this gene is 46446497

Identifier: 46446497

GI number: 46446497

Start: 1044121

End: 1045134

Strand: Reverse

Name: 46446497

Synonym: pc0863

Alternate gene names: NA

Gene position: 1045134-1044121 (Counterclockwise)

Preceding gene: 46446500

Following gene: 46446493

Centisome position: 43.29

GC content: 32.05

Gene sequence:

>1014_bases
ATGTCTGAATTTATAGCAGAACCCAATCCCGATACAAATGAAAGTAAACAACCACTATTAAACTCAACATTTAATATTGA
ACAATTATCAAGACAAATTCAGTCTACTCCTTTTCTTATTAAGCAAGCCCTGGAAAGTGATCGCATTTTACTAGATCATC
TTCAAAATTTAACTGAACGCACAAAAGCCTGTATCATGCATTTTAATGAACAGAAACAAACGATTTTAACTCGTTTTGAT
AATTGGCTAGCACCACTTGCTAGCGATGTATTAGACGAATTTATTAAACAAGCTCAGTTATTAAAAAGTGAACTAGATGA
AACTCTTCTTAATTTAAGAAAAATTGACACAATCGACTGGGATAAACATGCCAATTCTTGGTTAAACCTTTACCACCAGT
GGAGCGATCATAAAGAACTTAATAAAAAAATTTTAAAACTCGTTTCCGATCGAACTGAACATTTGATTGATAAAGACTTA
AAACTCATTAAAGAGTATCAAATTCAATATTTATCAAAAATGGAAGAAGAAGACCCCGATCTAATAAACTTAGAAAATCG
ACTTGCTAAAGCAATTGAAGAACCTCTTAAGCATCTCGTTGAACTGAAAACACATGTGAAAAATGCAGAGTCAATGCAAC
AAGCTTCTGAATGGATTGAAAAACTTGATTCTCAAAGAGAAAATTGTTTCGACCAATTGTTAATGAAAATTGACTCCGTT
GTAAAAGAAGTCGTTTTACCAGAAGCTGAAATTGGTTCTGAAGATTTAAAAGAAATTGAAAATGAGATGCATTTTGTCGC
CCAAGAACTCAAGCATATACATGAACTATTACCCAAGCTTGATAAACATGATGAAAAAGAATTTTATTTTACTGAAGTTC
GTTTAGAAGGGCTTAGAGATCATTTAGAACAATTCGACTCTTTAAAATTACCCTTTTCTACGAGAGATCGCTTAGAAACA
CTATTCGCAACTATTGAAGCAACGCTTTCAGAAGTTTTAAAAAGAAATGAATGA

Upstream 100 bases:

>100_bases
AATTAATTAAAAAAATTTATTTTTTACTTATTTCTTGCAAAAGAAAGAATTAACTTATCAAAATTTGGTTTATTTTCCCT
TCGGTCAATGATGAGGTTTT

Downstream 100 bases:

>100_bases
GTTATTAATAAATATATTCATCCGCTATTTCTCTTTTGTCATGTCCGTCAAGGACATGAAAAGCTCTTAATTTATTAAGT
GTGATTGGAGAAAGCTGTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 336

Protein sequence:

>337_residues
MSEFIAEPNPDTNESKQPLLNSTFNIEQLSRQIQSTPFLIKQALESDRILLDHLQNLTERTKACIMHFNEQKQTILTRFD
NWLAPLASDVLDEFIKQAQLLKSELDETLLNLRKIDTIDWDKHANSWLNLYHQWSDHKELNKKILKLVSDRTEHLIDKDL
KLIKEYQIQYLSKMEEEDPDLINLENRLAKAIEEPLKHLVELKTHVKNAESMQQASEWIEKLDSQRENCFDQLLMKIDSV
VKEVVLPEAEIGSEDLKEIENEMHFVAQELKHIHELLPKLDKHDEKEFYFTEVRLEGLRDHLEQFDSLKLPFSTRDRLET
LFATIEATLSEVLKRNE

Sequences:

>Translated_337_residues
MSEFIAEPNPDTNESKQPLLNSTFNIEQLSRQIQSTPFLIKQALESDRILLDHLQNLTERTKACIMHFNEQKQTILTRFD
NWLAPLASDVLDEFIKQAQLLKSELDETLLNLRKIDTIDWDKHANSWLNLYHQWSDHKELNKKILKLVSDRTEHLIDKDL
KLIKEYQIQYLSKMEEEDPDLINLENRLAKAIEEPLKHLVELKTHVKNAESMQQASEWIEKLDSQRENCFDQLLMKIDSV
VKEVVLPEAEIGSEDLKEIENEMHFVAQELKHIHELLPKLDKHDEKEFYFTEVRLEGLRDHLEQFDSLKLPFSTRDRLET
LFATIEATLSEVLKRNE
>Mature_336_residues
SEFIAEPNPDTNESKQPLLNSTFNIEQLSRQIQSTPFLIKQALESDRILLDHLQNLTERTKACIMHFNEQKQTILTRFDN
WLAPLASDVLDEFIKQAQLLKSELDETLLNLRKIDTIDWDKHANSWLNLYHQWSDHKELNKKILKLVSDRTEHLIDKDLK
LIKEYQIQYLSKMEEEDPDLINLENRLAKAIEEPLKHLVELKTHVKNAESMQQASEWIEKLDSQRENCFDQLLMKIDSVV
KEVVLPEAEIGSEDLKEIENEMHFVAQELKHIHELLPKLDKHDEKEFYFTEVRLEGLRDHLEQFDSLKLPFSTRDRLETL
FATIEATLSEVLKRNE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39817; Mature: 39686

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEFIAEPNPDTNESKQPLLNSTFNIEQLSRQIQSTPFLIKQALESDRILLDHLQNLTER
CCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
TKACIMHFNEQKQTILTRFDNWLAPLASDVLDEFIKQAQLLKSELDETLLNLRKIDTIDW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DKHANSWLNLYHQWSDHKELNKKILKLVSDRTEHLIDKDLKLIKEYQIQYLSKMEEEDPD
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
LINLENRLAKAIEEPLKHLVELKTHVKNAESMQQASEWIEKLDSQRENCFDQLLMKIDSV
CCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKEVVLPEAEIGSEDLKEIENEMHFVAQELKHIHELLPKLDKHDEKEFYFTEVRLEGLRD
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
HLEQFDSLKLPFSTRDRLETLFATIEATLSEVLKRNE
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SEFIAEPNPDTNESKQPLLNSTFNIEQLSRQIQSTPFLIKQALESDRILLDHLQNLTER
CCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
TKACIMHFNEQKQTILTRFDNWLAPLASDVLDEFIKQAQLLKSELDETLLNLRKIDTIDW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DKHANSWLNLYHQWSDHKELNKKILKLVSDRTEHLIDKDLKLIKEYQIQYLSKMEEEDPD
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
LINLENRLAKAIEEPLKHLVELKTHVKNAESMQQASEWIEKLDSQRENCFDQLLMKIDSV
CCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKEVVLPEAEIGSEDLKEIENEMHFVAQELKHIHELLPKLDKHDEKEFYFTEVRLEGLRD
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
HLEQFDSLKLPFSTRDRLETLFATIEATLSEVLKRNE
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA