Definition Candidatus Protochlamydia amoebophila UWE25, complete genome.
Accession NC_005861
Length 2,414,465

Click here to switch to the map view.

The map label for this gene is 46446333

Identifier: 46446333

GI number: 46446333

Start: 851359

End: 852702

Strand: Reverse

Name: 46446333

Synonym: pc0699

Alternate gene names: NA

Gene position: 852702-851359 (Counterclockwise)

Preceding gene: 46446334

Following gene: 46446332

Centisome position: 35.32

GC content: 32.59

Gene sequence:

>1344_bases
ATGTATGTGACACATAATCATAATCCCTGTTTCTTGCGTATTAATGATGAGATAAAAATAGATATCAATAGCGATTGGAA
AGTTCGTAATTTTTGGACAGTCAATGAAAAAAAGATTAGCTTATTTACGAAAGATGATCAGTTGAAATGCAAAACTTGTG
ACGCTGCTGGTAAAAAAATCACAACTGATATTTTAAAGCTGCAACCAGAAGCTGAACAAATTTCAAAAAAAAACACCATC
TCTTACGTTTTTGAGTGTAAAGCCGCCTTAGAAGATGATAATACTATAAGTTTTTCGAAGCCAATTTTAACACAAACATT
TGGCAAGAAAGAGATTACTTTGCTACGTAGAAAAAATGATTTTGTTTGGCAATTATTTTATAAAAACTTGAAAATAAGTA
TTCAGGTTCCGGTTGAGCGCATAACATGTTCTAGTCAATGCAGCATGGAAACTGTGCATAAGGTTAAAACAGTAAGAGAA
GGACTAAGTTTAGAAGAACAAAGCAAATTTTTTAGTAAATTTTTTACTGTTTTTAATTGCTCAGACCATAAAAAATTAGC
AAAAGAAATTGCAGTTTGGCAAATTATTGAAGAAAAAGAATTTGAATCAGTTAAAGATGCTGTAATTGTAAATACAGCTG
TAGGATCCATTGTTAGTTTAGGGACTTTGCTTTTTTCTCCTAGTAACGCTGCCCTATTTAGTATATTAGCGACTATACGA
GCAGCTCATAACTCTTATCGCAACTTTAGGGAATATAAGAATAGAATTAAAATTCAAAGGGATAGATATAGTGCTGAATT
CACTAAGATAGAAGAACAATTAAAGAATGTGAATTTTACAGTTGAAATAGAACCTTATAACGCTCCAAGTCAGCTTGATG
AACGAGTAAGGGTAAGTTCGTTTCAATGGGCTGTCACTTTGATTACTAATAATGGAATACTTGGTAATCATGCACTAATT
TGCTTTGAAGGGATAACAGAAGGCAACTATTTTGCAAAACTTGGCGAATTTACTGGTTTAAGAGTACGACTTAATAGGGA
TGTTAAAAAAGTTGAATTTCAAACACGATCTGTAATTTGGATGAAACAAAGTGAAGAAGTCCAAAAAGTCATTGATATCA
TTGATGAAGAAGACAGGAATCGGGTTGTTATTCCTTATTCCTACTGCGGCGAAAGTTCTATAATGGGAGGAAATTCGAAT
TGTCTGGATTGGGCGCGGAAAAAATTACGTTTGTTAGATATTCAACTAGAAAAAAGTGCTTTTGAAAATCTTGCTGCCTT
AGCTAAATTGTATACAAAACCACCTGAGTATTATTTTAACGAAAAAGTTGGGGTATCCCTTTAA

Upstream 100 bases:

>100_bases
TTCACTGGCTCTTCCCTAAACAATGCTAAATTAATAAACCGTGATAAAAGAAACCTTTGCCTTTCAGGCAAAGGTTCATG
ATGATAAGGAGAAATTTTTC

Downstream 100 bases:

>100_bases
AATTATCAAAATAAAAATTTAATGGATCAAGCACATGCATTTAGAAAATAGTTTATATCAAACAGATAAATTTGTTGAAT
TAGAACCAGTTATAGAACAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 447; Mature: 447

Protein sequence:

>447_residues
MYVTHNHNPCFLRINDEIKIDINSDWKVRNFWTVNEKKISLFTKDDQLKCKTCDAAGKKITTDILKLQPEAEQISKKNTI
SYVFECKAALEDDNTISFSKPILTQTFGKKEITLLRRKNDFVWQLFYKNLKISIQVPVERITCSSQCSMETVHKVKTVRE
GLSLEEQSKFFSKFFTVFNCSDHKKLAKEIAVWQIIEEKEFESVKDAVIVNTAVGSIVSLGTLLFSPSNAALFSILATIR
AAHNSYRNFREYKNRIKIQRDRYSAEFTKIEEQLKNVNFTVEIEPYNAPSQLDERVRVSSFQWAVTLITNNGILGNHALI
CFEGITEGNYFAKLGEFTGLRVRLNRDVKKVEFQTRSVIWMKQSEEVQKVIDIIDEEDRNRVVIPYSYCGESSIMGGNSN
CLDWARKKLRLLDIQLEKSAFENLAALAKLYTKPPEYYFNEKVGVSL

Sequences:

>Translated_447_residues
MYVTHNHNPCFLRINDEIKIDINSDWKVRNFWTVNEKKISLFTKDDQLKCKTCDAAGKKITTDILKLQPEAEQISKKNTI
SYVFECKAALEDDNTISFSKPILTQTFGKKEITLLRRKNDFVWQLFYKNLKISIQVPVERITCSSQCSMETVHKVKTVRE
GLSLEEQSKFFSKFFTVFNCSDHKKLAKEIAVWQIIEEKEFESVKDAVIVNTAVGSIVSLGTLLFSPSNAALFSILATIR
AAHNSYRNFREYKNRIKIQRDRYSAEFTKIEEQLKNVNFTVEIEPYNAPSQLDERVRVSSFQWAVTLITNNGILGNHALI
CFEGITEGNYFAKLGEFTGLRVRLNRDVKKVEFQTRSVIWMKQSEEVQKVIDIIDEEDRNRVVIPYSYCGESSIMGGNSN
CLDWARKKLRLLDIQLEKSAFENLAALAKLYTKPPEYYFNEKVGVSL
>Mature_447_residues
MYVTHNHNPCFLRINDEIKIDINSDWKVRNFWTVNEKKISLFTKDDQLKCKTCDAAGKKITTDILKLQPEAEQISKKNTI
SYVFECKAALEDDNTISFSKPILTQTFGKKEITLLRRKNDFVWQLFYKNLKISIQVPVERITCSSQCSMETVHKVKTVRE
GLSLEEQSKFFSKFFTVFNCSDHKKLAKEIAVWQIIEEKEFESVKDAVIVNTAVGSIVSLGTLLFSPSNAALFSILATIR
AAHNSYRNFREYKNRIKIQRDRYSAEFTKIEEQLKNVNFTVEIEPYNAPSQLDERVRVSSFQWAVTLITNNGILGNHALI
CFEGITEGNYFAKLGEFTGLRVRLNRDVKKVEFQTRSVIWMKQSEEVQKVIDIIDEEDRNRVVIPYSYCGESSIMGGNSN
CLDWARKKLRLLDIQLEKSAFENLAALAKLYTKPPEYYFNEKVGVSL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51631; Mature: 51631

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYVTHNHNPCFLRINDEIKIDINSDWKVRNFWTVNEKKISLFTKDDQLKCKTCDAAGKKI
CEEECCCCEEEEEECCEEEEEECCCEEEEEEEEECCCEEEEEECCCCCEEEECCCCCCHH
TTDILKLQPEAEQISKKNTISYVFECKAALEDDNTISFSKPILTQTFGKKEITLLRRKND
EEHHHHCCCCHHHHCCCCCEEEEEEEEHHCCCCCEEEECCCHHHHHCCCCEEEEEECCCC
FVWQLFYKNLKISIQVPVERITCSSQCSMETVHKVKTVREGLSLEEQSKFFSKFFTVFNC
CEEEEEECCEEEEEEECHHEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
SDHKKLAKEIAVWQIIEEKEFESVKDAVIVNTAVGSIVSLGTLLFSPSNAALFSILATIR
CCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHEECCCCHHHHHHHHHHH
AAHNSYRNFREYKNRIKIQRDRYSAEFTKIEEQLKNVNFTVEIEPYNAPSQLDERVRVSS
HHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCC
FQWAVTLITNNGILGNHALICFEGITEGNYFAKLGEFTGLRVRLNRDVKKVEFQTRSVIW
EEEEEEEEECCCEECCCEEEEEECCCCCCHHHHHCCCCCEEEEECCCCCCEEEEEEEEEE
MKQSEEVQKVIDIIDEEDRNRVVIPYSYCGESSIMGGNSNCLDWARKKLRLLDIQLEKSA
EECHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHEEEEEEEEHHHH
FENLAALAKLYTKPPEYYFNEKVGVSL
HHHHHHHHHHHCCCCCHHCCCCCCCCC
>Mature Secondary Structure
MYVTHNHNPCFLRINDEIKIDINSDWKVRNFWTVNEKKISLFTKDDQLKCKTCDAAGKKI
CEEECCCCEEEEEECCEEEEEECCCEEEEEEEEECCCEEEEEECCCCCEEEECCCCCCHH
TTDILKLQPEAEQISKKNTISYVFECKAALEDDNTISFSKPILTQTFGKKEITLLRRKND
EEHHHHCCCCHHHHCCCCCEEEEEEEEHHCCCCCEEEECCCHHHHHCCCCEEEEEECCCC
FVWQLFYKNLKISIQVPVERITCSSQCSMETVHKVKTVREGLSLEEQSKFFSKFFTVFNC
CEEEEEECCEEEEEEECHHEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
SDHKKLAKEIAVWQIIEEKEFESVKDAVIVNTAVGSIVSLGTLLFSPSNAALFSILATIR
CCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHEECCCCHHHHHHHHHHH
AAHNSYRNFREYKNRIKIQRDRYSAEFTKIEEQLKNVNFTVEIEPYNAPSQLDERVRVSS
HHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCC
FQWAVTLITNNGILGNHALICFEGITEGNYFAKLGEFTGLRVRLNRDVKKVEFQTRSVIW
EEEEEEEEECCCEECCCEEEEEECCCCCCHHHHHCCCCCEEEEECCCCCCEEEEEEEEEE
MKQSEEVQKVIDIIDEEDRNRVVIPYSYCGESSIMGGNSNCLDWARKKLRLLDIQLEKSA
EECHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHEEEEEEEEHHHH
FENLAALAKLYTKPPEYYFNEKVGVSL
HHHHHHHHHHHCCCCCHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA