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The map label for this gene is recD [H]

Identifier: 46446323

GI number: 46446323

Start: 837508

End: 839673

Strand: Reverse

Name: recD [H]

Synonym: pc0689

Alternate gene names: 46446323

Gene position: 839673-837508 (Counterclockwise)

Preceding gene: 46446327

Following gene: 46446322

Centisome position: 34.78

GC content: 36.2

Gene sequence:

>2166_bases
ATGGAACAAATCTGCGGTTACGTTGAAAGATTGACATTTCATAATTCAGAAAATGGATATACCGTTGCACAGCTCCAACA
ACCAAAACAAAGTGAATTAACTTGCATTGTTGGATGTATGCCAGGTATTCAGCCAGGAGAAACGATTCGCTGTAACGGAA
ACTGGAAAACGCATCTCATTCATGGAAGACAATTTGAAATATCTAGTTTTCGAGTCGAAGCGCCCGCCGATATTTTAGGG
ATCAAGAAATATTTAGGGTCTGGCTTGATTAAAGGAATTGGACCGAAATACGCCACTCGCATTGTAGATATTTTTGGAAT
AGACACTCTAAAAATTATTGAAGAGTCTCCCCAAAGGCTATTAGAAATTGAAGGACTGGGAACCAAACGAGTTGAAAAAA
TTCAAGCCTGTTGGATCGAACAAAAATCGATTCGAGATGTAATGATTTTTCTTCAAGGGCATGGCGTTAGTCCAGCGTTT
GCTCAAAAAATTTTCAAAAAATATGGTTCGCAAAGCATTTTAAAACTTAAAGATAATCCTTATTGCTTGGCTCGAGATAT
TTTTGGAGTGGGCTTTAAAACTGCTGATACAGTTGCTCAAAAAATGGGCATTTCTAAAGATTCAGAGCAAAGAATTGGAG
CAGGAATTGAGTATGTTTTATCTCAATTATCGGGAGATGGACATGTTTGCTATCCGGTCGATGAGTTTTTAAAAGAGGCT
GAAACTCATTTAGAAGTAAAGGCAGATTTGATTGAAAAAAGACTCGAAGGGCTTCAAAGTGAAGAAAGGATTATACTCGC
TCAATTAATTCATGAAGGAAAAAAACGGGACTTTATTTGGATCAAGCCATTATTTATTGCCGAAACAGGAATTGCACGAG
AACTTAAAAGACTCAAAAATGGAGTCAGTACCTTTCGCTCAATTAATAAAGAAAAAGCTGTGGAATGGGTACAGGCACAA
TTAAAAATTGAATTAGCTCCTAATCAAAAAGAAGCCGTTGCCAAAGCAATTTCGACAAAATTACATATTATTACAGGTGG
CCCAGGAACAGGGAAAAGCACTATTACAAATGCAATTTTACAGATCACTGCGATTCTAACTCAAAAAATTTTGTTAGCAG
CTCCAACAGGAAGAGCAGCTAAACGAATGAGCGAAATTACCAAACGAAAAGCCTCTACGATTCACAGCCTTCTGGAATAT
GATTTCAAATCAACAGGAGGTTTTAAACGAAATCGAGAAAATCCTTTAGATTGCGACTTAATCATCATCGATGAAGCCAG
CATGATTGATACGTTTTTAATGTACAGCCTTTTAAAAGCGCTACCCGACCACACGCGAGTGATTTTTGTTGGGGATATTC
ACCAATTGCCGAGCGTAGGACCGGGTAACGTCTTAAGTGACATGATTACGTCTCTTACCATCTCTGTAACGACATTAAAA
GAAATTTTTAGACAAGCGGCAGGTTCTCACATTATTACAAATGCCCATCGAGTCAATAAAGGAATGTTTCCCAGCCTTTA
TAATGGACAAAACAGTGACTTTTTCTTTATCGAATGTCAGGAAAATGAAGAAGTTTTAAATACTATAGTCAAATTGGTCT
CCCAAAGACTTCCTAATCGCTATGGATTTAATCCTAATCAAGATATTCAAGTATTGGCCCCCATGAAAAAAGGGTTAATT
GGCACAGAACACCTCAATCAATCCCTACAAATGATTCTTAATCCAAAAGAACACGCTCTTTTTAGAGGAGGGCAAAAATT
TCAAGTGGGTGATAAAGTCATGCAAATTCGCAATGACTATCAAAAAGAAGTTTTTAATGGAGATATTGGTTATATTCTCA
ACATTGATTCAGAAGAACAGCAAGTTTTAATTCAATTTGAAGATAAAGAAGTTGTTTACGATTATACTGATTTAGATGAA
TTGATTTTAGCTTACGCTATTTCCGTTCATAAATTCCAAGGAAGCGAGTGTCCTTGCGTTGTCATGCCAGTTCATACAAG
TCATTTTATGTTACTTCATCGCAATTTACTTTATACAGGCATTACACGTGGAAAAAAACTTGTTGTTTTGGTTGGCACTA
AAAAAGCTTTAGCAATTGCTGTTAAAAAAGATGATGTTCAAAAAAGATATACTAGCCTTCAAAATGCTTTAATGGAAATT
ATTTAA

Upstream 100 bases:

>100_bases
AGTCAAGTTTTTAATTCGATGAAGTATTTGAATAAAGAATAAAACTTTCCGTTATATTCAAAGTGTTCGTTATCAATACC
GGGCAGAATAAAAGGCAACG

Downstream 100 bases:

>100_bases
TGTCCAAAAAACAAACTACACCTATTTTTAAATTATCCAAATTAAAGAAATCTTCAATCAGTAGCTTACTTGCCTTACTT
GTATTTGCTATCTATCAATT

Product: putative exodeoxyribonuclease V

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 721; Mature: 721

Protein sequence:

>721_residues
MEQICGYVERLTFHNSENGYTVAQLQQPKQSELTCIVGCMPGIQPGETIRCNGNWKTHLIHGRQFEISSFRVEAPADILG
IKKYLGSGLIKGIGPKYATRIVDIFGIDTLKIIEESPQRLLEIEGLGTKRVEKIQACWIEQKSIRDVMIFLQGHGVSPAF
AQKIFKKYGSQSILKLKDNPYCLARDIFGVGFKTADTVAQKMGISKDSEQRIGAGIEYVLSQLSGDGHVCYPVDEFLKEA
ETHLEVKADLIEKRLEGLQSEERIILAQLIHEGKKRDFIWIKPLFIAETGIARELKRLKNGVSTFRSINKEKAVEWVQAQ
LKIELAPNQKEAVAKAISTKLHIITGGPGTGKSTITNAILQITAILTQKILLAAPTGRAAKRMSEITKRKASTIHSLLEY
DFKSTGGFKRNRENPLDCDLIIIDEASMIDTFLMYSLLKALPDHTRVIFVGDIHQLPSVGPGNVLSDMITSLTISVTTLK
EIFRQAAGSHIITNAHRVNKGMFPSLYNGQNSDFFFIECQENEEVLNTIVKLVSQRLPNRYGFNPNQDIQVLAPMKKGLI
GTEHLNQSLQMILNPKEHALFRGGQKFQVGDKVMQIRNDYQKEVFNGDIGYILNIDSEEQQVLIQFEDKEVVYDYTDLDE
LILAYAISVHKFQGSECPCVVMPVHTSHFMLLHRNLLYTGITRGKKLVVLVGTKKALAIAVKKDDVQKRYTSLQNALMEI
I

Sequences:

>Translated_721_residues
MEQICGYVERLTFHNSENGYTVAQLQQPKQSELTCIVGCMPGIQPGETIRCNGNWKTHLIHGRQFEISSFRVEAPADILG
IKKYLGSGLIKGIGPKYATRIVDIFGIDTLKIIEESPQRLLEIEGLGTKRVEKIQACWIEQKSIRDVMIFLQGHGVSPAF
AQKIFKKYGSQSILKLKDNPYCLARDIFGVGFKTADTVAQKMGISKDSEQRIGAGIEYVLSQLSGDGHVCYPVDEFLKEA
ETHLEVKADLIEKRLEGLQSEERIILAQLIHEGKKRDFIWIKPLFIAETGIARELKRLKNGVSTFRSINKEKAVEWVQAQ
LKIELAPNQKEAVAKAISTKLHIITGGPGTGKSTITNAILQITAILTQKILLAAPTGRAAKRMSEITKRKASTIHSLLEY
DFKSTGGFKRNRENPLDCDLIIIDEASMIDTFLMYSLLKALPDHTRVIFVGDIHQLPSVGPGNVLSDMITSLTISVTTLK
EIFRQAAGSHIITNAHRVNKGMFPSLYNGQNSDFFFIECQENEEVLNTIVKLVSQRLPNRYGFNPNQDIQVLAPMKKGLI
GTEHLNQSLQMILNPKEHALFRGGQKFQVGDKVMQIRNDYQKEVFNGDIGYILNIDSEEQQVLIQFEDKEVVYDYTDLDE
LILAYAISVHKFQGSECPCVVMPVHTSHFMLLHRNLLYTGITRGKKLVVLVGTKKALAIAVKKDDVQKRYTSLQNALMEI
I
>Mature_721_residues
MEQICGYVERLTFHNSENGYTVAQLQQPKQSELTCIVGCMPGIQPGETIRCNGNWKTHLIHGRQFEISSFRVEAPADILG
IKKYLGSGLIKGIGPKYATRIVDIFGIDTLKIIEESPQRLLEIEGLGTKRVEKIQACWIEQKSIRDVMIFLQGHGVSPAF
AQKIFKKYGSQSILKLKDNPYCLARDIFGVGFKTADTVAQKMGISKDSEQRIGAGIEYVLSQLSGDGHVCYPVDEFLKEA
ETHLEVKADLIEKRLEGLQSEERIILAQLIHEGKKRDFIWIKPLFIAETGIARELKRLKNGVSTFRSINKEKAVEWVQAQ
LKIELAPNQKEAVAKAISTKLHIITGGPGTGKSTITNAILQITAILTQKILLAAPTGRAAKRMSEITKRKASTIHSLLEY
DFKSTGGFKRNRENPLDCDLIIIDEASMIDTFLMYSLLKALPDHTRVIFVGDIHQLPSVGPGNVLSDMITSLTISVTTLK
EIFRQAAGSHIITNAHRVNKGMFPSLYNGQNSDFFFIECQENEEVLNTIVKLVSQRLPNRYGFNPNQDIQVLAPMKKGLI
GTEHLNQSLQMILNPKEHALFRGGQKFQVGDKVMQIRNDYQKEVFNGDIGYILNIDSEEQQVLIQFEDKEVVYDYTDLDE
LILAYAISVHKFQGSECPCVVMPVHTSHFMLLHRNLLYTGITRGKKLVVLVGTKKALAIAVKKDDVQKRYTSLQNALMEI
I

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789182, Length=559, Percent_Identity=26.1180679785331, Blast_Score=140, Evalue=3e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 80883; Mature: 80883

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQICGYVERLTFHNSENGYTVAQLQQPKQSELTCIVGCMPGIQPGETIRCNGNWKTHLI
CCHHHHHHHHHHEECCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCEEEECCCEEEEEE
HGRQFEISSFRVEAPADILGIKKYLGSGLIKGIGPKYATRIVDIFGIDTLKIIEESPQRL
ECCEEEECCEEECCCHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHCCCHHHHHHHCHHHH
LEIEGLGTKRVEKIQACWIEQKSIRDVMIFLQGHGVSPAFAQKIFKKYGSQSILKLKDNP
EEECCCCHHHHHHHHHHHHCHHHHHEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCC
YCLARDIFGVGFKTADTVAQKMGISKDSEQRIGAGIEYVLSQLSGDGHVCYPVDEFLKEA
EEEEHHHHHCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHCCCCCEEECHHHHHHHH
ETHLEVKADLIEKRLEGLQSEERIILAQLIHEGKKRDFIWIKPLFIAETGIARELKRLKN
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEEHHHCCCCHHHHHHHHHH
GVSTFRSINKEKAVEWVQAQLKIELAPNQKEAVAKAISTKLHIITGGPGTGKSTITNAIL
HHHHHHHCCHHHHHHHHHHEEEEEECCCHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHH
QITAILTQKILLAAPTGRAAKRMSEITKRKASTIHSLLEYDFKSTGGFKRNRENPLDCDL
HHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE
IIIDEASMIDTFLMYSLLKALPDHTRVIFVGDIHQLPSVGPGNVLSDMITSLTISVTTLK
EEECCHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHH
EIFRQAAGSHIITNAHRVNKGMFPSLYNGQNSDFFFIECQENEEVLNTIVKLVSQRLPNR
HHHHHHCCCEEEECHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCC
YGFNPNQDIQVLAPMKKGLIGTEHLNQSLQMILNPKEHALFRGGQKFQVGDKVMQIRNDY
CCCCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCHHHHHHCCCCEEEHHHHHHHHHHHH
QKEVFNGDIGYILNIDSEEQQVLIQFEDKEVVYDYTDLDELILAYAISVHKFQGSECPCV
HHHHHCCCCCEEEECCCCCCEEEEEEECCEEEEECCCHHHHHHHHHHHHHEECCCCCCEE
VMPVHTSHFMLLHRNLLYTGITRGKKLVVLVGTKKALAIAVKKDDVQKRYTSLQNALMEI
EEECCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHH
I
C
>Mature Secondary Structure
MEQICGYVERLTFHNSENGYTVAQLQQPKQSELTCIVGCMPGIQPGETIRCNGNWKTHLI
CCHHHHHHHHHHEECCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCEEEECCCEEEEEE
HGRQFEISSFRVEAPADILGIKKYLGSGLIKGIGPKYATRIVDIFGIDTLKIIEESPQRL
ECCEEEECCEEECCCHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHCCCHHHHHHHCHHHH
LEIEGLGTKRVEKIQACWIEQKSIRDVMIFLQGHGVSPAFAQKIFKKYGSQSILKLKDNP
EEECCCCHHHHHHHHHHHHCHHHHHEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCC
YCLARDIFGVGFKTADTVAQKMGISKDSEQRIGAGIEYVLSQLSGDGHVCYPVDEFLKEA
EEEEHHHHHCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHCCCCCEEECHHHHHHHH
ETHLEVKADLIEKRLEGLQSEERIILAQLIHEGKKRDFIWIKPLFIAETGIARELKRLKN
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEEHHHCCCCHHHHHHHHHH
GVSTFRSINKEKAVEWVQAQLKIELAPNQKEAVAKAISTKLHIITGGPGTGKSTITNAIL
HHHHHHHCCHHHHHHHHHHEEEEEECCCHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHH
QITAILTQKILLAAPTGRAAKRMSEITKRKASTIHSLLEYDFKSTGGFKRNRENPLDCDL
HHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE
IIIDEASMIDTFLMYSLLKALPDHTRVIFVGDIHQLPSVGPGNVLSDMITSLTISVTTLK
EEECCHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHH
EIFRQAAGSHIITNAHRVNKGMFPSLYNGQNSDFFFIECQENEEVLNTIVKLVSQRLPNR
HHHHHHCCCEEEECHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCC
YGFNPNQDIQVLAPMKKGLIGTEHLNQSLQMILNPKEHALFRGGQKFQVGDKVMQIRNDY
CCCCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCHHHHHHCCCCEEEHHHHHHHHHHHH
QKEVFNGDIGYILNIDSEEQQVLIQFEDKEVVYDYTDLDELILAYAISVHKFQGSECPCV
HHHHHCCCCCEEEECCCCCCEEEEEEECCEEEEECCCHHHHHHHHHHHHHEECCCCCCEE
VMPVHTSHFMLLHRNLLYTGITRGKKLVVLVGTKKALAIAVKKDDVQKRYTSLQNALMEI
EEECCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHH
I
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]