Definition Candidatus Protochlamydia amoebophila UWE25, complete genome.
Accession NC_005861
Length 2,414,465

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The map label for this gene is 46446024

Identifier: 46446024

GI number: 46446024

Start: 523661

End: 525067

Strand: Direct

Name: 46446024

Synonym: pc0390

Alternate gene names: NA

Gene position: 523661-525067 (Clockwise)

Preceding gene: 46446023

Following gene: 46446025

Centisome position: 21.69

GC content: 35.61

Gene sequence:

>1407_bases
ATGAAACAACGATCTTTTTTACTCCTCCTCATATTAACTATCTGTTTAGGGTTTCATTCTTCTGTAGAAGCTTCGAAATC
CAGGCCTTTTTCAAGTCAACAAGAGGCTCAAAGATACCTAAATCAACATTACAATAAAGGGTGTCATTATTATAATAAGC
AGAATTGGCGTTTTGCGATGGATGAATTTGAAAAAGTAGTTTATTTTTTTCCAAATTCTACAGAAGCAGCTGAAGCCTAT
TATTATTTAGGAGTCTGTTATTTTGAAAGAAAAGAGTATGACTTCGCAAATAATGCATTTTCAAAATATTTGACTTCTGT
TGAACAACCGGCTTTTTTTGAAGATGCTGTGCATTATAAATTCTGCATTGCAGAGCATTTTCGCTGCGGAAAAAGAAGAA
GGCCTTTAACATTTCGTTATTTTCCTAAATGGATGTCTGGGCAAACAATAGCTTTAACAATTTACGATGAAATCATTGTC
GCAATGCCGAACAGTGATATGACGGTTAATGCTTTATATTCTAAGGCTCAATTACTGCAAAAAATGGAAAGTTTTAGAGA
AGCTATTGAAACATATCAAATTTTAATTCGCCGATTTCCTAAACATGAAATGACTCCGCTGTGTTATCTTAAAATTGCTG
AATCTTACTCCCAACAAAGTGTTTATGAATTTCAAAATCCCGATATTTTGGCATTAGCAGAACTCAATTCACGGAAATTT
AAAGAAGAATTTCCTCGGGAAGAAAAAACTGAACTTGCAGAAAGGTATGTTCAAAGAATTAAGGATATGTATGCCAAAGG
TTTGTGCGACATGGGGTTATTTTACGAGAGAATGGGCCACCCTGATGCAGCTGCTATCTATTTTCGTAGCTCGATTGAAG
AATTTCCTGATACATATGTAGCAGGTTATTGTCGCTCACGTTTGAAATCATTTGGGTGTGAATATGAGGAAGAGCAACCA
ATTTTGATAGAATCAGGCGAAATAGAAAATTCTTGCCAAGAGAAAGAGACTTGTGAAAATGAAAGCCTGCCTATGCAAAA
AGAAAATCCTGAAGCTCAATCGCAAATTTTAAGTCTACAGCTATCTTCAGATAAAGTTAGCCAAGAGCATCTTGTTGAAG
AAGTTCTTATTAATCACTCCTCTGTAGACTCTGCAGAAGTCCTCCCAAAAGACTGTTATCAAGAAGAGATAGTTAATGCT
CGTCCATATGAATCCCAATTTAACGATTTTATTTTTTATGATTTGCAATCCGATGCTGTTCTTCCCGATCATGAATCAGT
CAATGGAAAAACAAATGAGCAAATGGATTCTCAATTAGATGTCCAGGAAGAGATTGGGACGACTCCTTATATTCTTCATT
ATAGCTTGACAAAGAAAACCCCTCAACAGCGCATGCAAAGACCTTAG

Upstream 100 bases:

>100_bases
AAGTGGGTATTAGATTGACAGTAAGGAAGTATCCTCATAAACTAAATCCCTTAATAGCAAATCGATTTTTTTGAAAAGTT
AATTCATTTAGCGAGAGTTT

Downstream 100 bases:

>100_bases
CTGCGATGATTAAATTCATTCTGACTTGTTTTTTTTTATTGGGTTTTTTTTCAAGCTGTCAATACCAATTTGGAAAAGGA
GAATTGGCTGATCAATATCA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 468; Mature: 468

Protein sequence:

>468_residues
MKQRSFLLLLILTICLGFHSSVEASKSRPFSSQQEAQRYLNQHYNKGCHYYNKQNWRFAMDEFEKVVYFFPNSTEAAEAY
YYLGVCYFERKEYDFANNAFSKYLTSVEQPAFFEDAVHYKFCIAEHFRCGKRRRPLTFRYFPKWMSGQTIALTIYDEIIV
AMPNSDMTVNALYSKAQLLQKMESFREAIETYQILIRRFPKHEMTPLCYLKIAESYSQQSVYEFQNPDILALAELNSRKF
KEEFPREEKTELAERYVQRIKDMYAKGLCDMGLFYERMGHPDAAAIYFRSSIEEFPDTYVAGYCRSRLKSFGCEYEEEQP
ILIESGEIENSCQEKETCENESLPMQKENPEAQSQILSLQLSSDKVSQEHLVEEVLINHSSVDSAEVLPKDCYQEEIVNA
RPYESQFNDFIFYDLQSDAVLPDHESVNGKTNEQMDSQLDVQEEIGTTPYILHYSLTKKTPQQRMQRP

Sequences:

>Translated_468_residues
MKQRSFLLLLILTICLGFHSSVEASKSRPFSSQQEAQRYLNQHYNKGCHYYNKQNWRFAMDEFEKVVYFFPNSTEAAEAY
YYLGVCYFERKEYDFANNAFSKYLTSVEQPAFFEDAVHYKFCIAEHFRCGKRRRPLTFRYFPKWMSGQTIALTIYDEIIV
AMPNSDMTVNALYSKAQLLQKMESFREAIETYQILIRRFPKHEMTPLCYLKIAESYSQQSVYEFQNPDILALAELNSRKF
KEEFPREEKTELAERYVQRIKDMYAKGLCDMGLFYERMGHPDAAAIYFRSSIEEFPDTYVAGYCRSRLKSFGCEYEEEQP
ILIESGEIENSCQEKETCENESLPMQKENPEAQSQILSLQLSSDKVSQEHLVEEVLINHSSVDSAEVLPKDCYQEEIVNA
RPYESQFNDFIFYDLQSDAVLPDHESVNGKTNEQMDSQLDVQEEIGTTPYILHYSLTKKTPQQRMQRP
>Mature_468_residues
MKQRSFLLLLILTICLGFHSSVEASKSRPFSSQQEAQRYLNQHYNKGCHYYNKQNWRFAMDEFEKVVYFFPNSTEAAEAY
YYLGVCYFERKEYDFANNAFSKYLTSVEQPAFFEDAVHYKFCIAEHFRCGKRRRPLTFRYFPKWMSGQTIALTIYDEIIV
AMPNSDMTVNALYSKAQLLQKMESFREAIETYQILIRRFPKHEMTPLCYLKIAESYSQQSVYEFQNPDILALAELNSRKF
KEEFPREEKTELAERYVQRIKDMYAKGLCDMGLFYERMGHPDAAAIYFRSSIEEFPDTYVAGYCRSRLKSFGCEYEEEQP
ILIESGEIENSCQEKETCENESLPMQKENPEAQSQILSLQLSSDKVSQEHLVEEVLINHSSVDSAEVLPKDCYQEEIVNA
RPYESQFNDFIFYDLQSDAVLPDHESVNGKTNEQMDSQLDVQEEIGTTPYILHYSLTKKTPQQRMQRP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55028; Mature: 55028

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQRSFLLLLILTICLGFHSSVEASKSRPFSSQQEAQRYLNQHYNKGCHYYNKQNWRFAM
CCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEHH
DEFEKVVYFFPNSTEAAEAYYYLGVCYFERKEYDFANNAFSKYLTSVEQPAFFEDAVHYK
HHHCEEEEECCCCCCHHHHHEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH
FCIAEHFRCGKRRRPLTFRYFPKWMSGQTIALTIYDEIIVAMPNSDMTVNALYSKAQLLQ
HHHHHHHHCCCCCCCCEEEECCHHCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHH
KMESFREAIETYQILIRRFPKHEMTPLCYLKIAESYSQQSVYEFQNPDILALAELNSRKF
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHH
KEEFPREEKTELAERYVQRIKDMYAKGLCDMGLFYERMGHPDAAAIYFRSSIEEFPDTYV
HHHCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHH
AGYCRSRLKSFGCEYEEEQPILIESGEIENSCQEKETCENESLPMQKENPEAQSQILSLQ
HHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHEEEE
LSSDKVSQEHLVEEVLINHSSVDSAEVLPKDCYQEEIVNARPYESQFNDFIFYDLQSDAV
ECCCHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHCCCCCCHHCCCCEEEEECCCCCC
LPDHESVNGKTNEQMDSQLDVQEEIGTTPYILHYSLTKKTPQQRMQRP
CCCCCCCCCCCCHHHHHHCCHHHHHCCCCEEEEEEHHCCCHHHHCCCC
>Mature Secondary Structure
MKQRSFLLLLILTICLGFHSSVEASKSRPFSSQQEAQRYLNQHYNKGCHYYNKQNWRFAM
CCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEHH
DEFEKVVYFFPNSTEAAEAYYYLGVCYFERKEYDFANNAFSKYLTSVEQPAFFEDAVHYK
HHHCEEEEECCCCCCHHHHHEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH
FCIAEHFRCGKRRRPLTFRYFPKWMSGQTIALTIYDEIIVAMPNSDMTVNALYSKAQLLQ
HHHHHHHHCCCCCCCCEEEECCHHCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHH
KMESFREAIETYQILIRRFPKHEMTPLCYLKIAESYSQQSVYEFQNPDILALAELNSRKF
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHH
KEEFPREEKTELAERYVQRIKDMYAKGLCDMGLFYERMGHPDAAAIYFRSSIEEFPDTYV
HHHCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHH
AGYCRSRLKSFGCEYEEEQPILIESGEIENSCQEKETCENESLPMQKENPEAQSQILSLQ
HHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHEEEE
LSSDKVSQEHLVEEVLINHSSVDSAEVLPKDCYQEEIVNARPYESQFNDFIFYDLQSDAV
ECCCHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHCCCCCCHHCCCCEEEEECCCCCC
LPDHESVNGKTNEQMDSQLDVQEEIGTTPYILHYSLTKKTPQQRMQRP
CCCCCCCCCCCCHHHHHHCCHHHHHCCCCEEEEEEHHCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA