| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is pheT [H]
Identifier: 46446003
GI number: 46446003
Start: 494708
End: 497116
Strand: Direct
Name: pheT [H]
Synonym: pc0369
Alternate gene names: 46446003
Gene position: 494708-497116 (Clockwise)
Preceding gene: 46445999
Following gene: 46446004
Centisome position: 20.49
GC content: 35.82
Gene sequence:
>2409_bases TTGGTCATTATGCGTATACCTTTATCTTGGCTTAAAGAATATATTGATTTGAATCTTGAACCTGTTGAAATAGCTAAAAT TTTGACAATGGCTGGTCTAGAAGTAGATGGCTATGAAGAGATAGGAAAGGGATTTTCGGGAGTTATTGTGGGAGATGTTT TGGAAGTAGAAAAACATCCTAATGCTGATAAACTCCTTATTGCTTTGGTAAGTGATGGAAAAGAAATTCATCAAGTGGTT TGTGGAGCTTCTAATTGTCGAAAAGGATTAAAAACAGCATTTGCACCTGTTGGAGCTTCTCTGATTGATGAAGGGAAAGA GTTTAAAATAAAAAAAGGAAAGTTAAGAGGAATTGAATCAAACGGCATGCTTTGCTCGGCCAAAGAACTGCAGATATCAA ATGAAGATGATGGAATTATGGAACTTTCAGAACATCTACAAGCAGGAACAGCATTAAATACGCTTTATTCGGATACCATT TTTGAAATTTCTTTAACGCCTAATTTGGGGCATTGTGCAAGTATTGTTGGTGTAGCTCGGGAGTTATCTGCAGCGACAAG CCATCCTCTTCGTTATCCTCATTTGGTTTTTAAAGAAGAGGGAAATCTTATTAATAACAGTCTTACACTTGATATTGAAG CGAAAGAAGCTTGTTCAAGGTACACTTGCCGGGTGATTAAAAATGTGAAAGTAGGTGCTTCTCCAGATTGGTTAAAAGCA AAAATCGAAAAGAGTGGTCTTCGCAGTGTAAATAATATTGTTGATGTAACTAATTATGTATTGTTAGAAATGGGGCATCC TTTGCATGCCTTTGATTACGATCTTGTCAAAGGAAAAAAAATTGTTGTTAGAATGGCTCAAGAAGGAGAAATTTTTGAGA CTTTGGATGGGAAAGAGCGAATTTTAAAAGATTCTCACCTAGTGATTGCTGATTCAGAAAAGCCCATAGCTATTGCTGGC GTGATGGGAGGGCGCAATAGCGAAGTGAGCGAGAAAACAACCAATATTATTTTAGAATCTGCTTTTTTTGATCCTATTTT TGTGCGAAAAACAAGCAAACAATTAGGATTGCAAACAGATGCTTCTAAGCGATTTGAAAGGGGCACTGACCCAAACCAAC TGATTTCGGTTCTTAATCGCGCAGCTATGTTAATTCAAATGGTGGCTGGAGGGATAATTGAAGATTCTATTTTAGATGAG CAAACGAAAGACTTTCTAGAATTGACAATTCGATGCAGACTATCTCGAATAAATCAGATATTGGGGACAACGCTTAGTCG AGGAGAAGTTGAAACTATTTTTCAAAGTTTAGGATTCCATTATCAATGGGATGGACAAGATAGTTTTATGGTATGCGTGC CTACTTACCGGACTGACGTTAAAGAAGAAATTGACCTCATTGAAGAAGTTGCTCGCATCTATGGCTACGATCACATTCCA AGAAATGGTGGTCGTTATCAAACGTCCAAATTACCTGATGCACCGATTTATCTATTCGAAAAAGAAATTCAATCATATTT GATTGCAGAAGGGTTACAGGAATTTATCACATGTGATTTGATTGGGCCAACTTTGGTCAATGTTGTGCAAAACCTTTCTA TGCCTGCAGAAGCAATTGTCAAAGTTCTAAATCCTACGTCGATAGAACAATCGATTTTGAGAACATCTTTATTACCCGGA CTTTTACAAGTTGTCAAATACAATTTGGATCATCAAAACCATCAAATCAATGGATTCGAAATTGGGCGGATCCATTTTAA AGACGGCGATCAATATCAAGAACAATCTGTTGTTGGAATTCTTTTATCAGGCTTTTCTCAACCCTACCATTTTGAAGAGA AAAAACGAGAGTATGATTTTTATGATTTGAAAGGAATTATAGAAAACCTTTTGAAAGAACTAGGAATTGAAAAACCGCAA TTTAAAAATTTAGATCTTAAAACTTTTCATTCTGGGCGGCAGGCTTCTTTGTTTGTAGATGAACTTGAGGTAGGTTCTTT TGGAGAAGTTCATCCTAGTATTCAAAGGCGTTTAGATGTTTCTCAGCGTATCTTATTTGGAGAGTTTAATTTACATGACT TAATGCAAGTGGCAACTAAACTTGAAAAAGTCAAACCTTTAGCTATTTATCCTGGTTCTGAACGCGATTGGACTTTCACA ATCAAGACGTCTGTACCTTTTGCTGAAATTATCAAGGCTATTCATGAGCAAAAATCTGATCTATTAGAAAATGTATTGTT ATTAGATATTTACCGAAGTGAAAAACTGACAGTTGGTCATCAAAATATGACTCTGCGATTTATTTATCGGGATTTTTCTA AAACAATTGCACAAGAAGTTGTAGAAAATGAGCATCAACGATTAAAAACAGCAGTTTCTCAAAAGTTTGCTAATGATCTT AAACAATAA
Upstream 100 bases:
>100_bases AATTTTATGATAAAATATTCTTAATATCTCCTCGAGCTTCTCAATTAAAAGAATCTATTCAGAATGAAAATCATTTAATC CTTAAAATCTAAATCTATGT
Downstream 100 bases:
>100_bases TTTGAGAAAATTCTCATTCAATTGGAGTGTTATATGAAGAATTCATTTTTCTTATCTTCTACTTTGTTATGTCTATTAGT TTCTACCTCTTGTCAAACTC
Product: putative phenylalanine-tRNA ligase beta chain
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS [H]
Number of amino acids: Translated: 802; Mature: 802
Protein sequence:
>802_residues MVIMRIPLSWLKEYIDLNLEPVEIAKILTMAGLEVDGYEEIGKGFSGVIVGDVLEVEKHPNADKLLIALVSDGKEIHQVV CGASNCRKGLKTAFAPVGASLIDEGKEFKIKKGKLRGIESNGMLCSAKELQISNEDDGIMELSEHLQAGTALNTLYSDTI FEISLTPNLGHCASIVGVARELSAATSHPLRYPHLVFKEEGNLINNSLTLDIEAKEACSRYTCRVIKNVKVGASPDWLKA KIEKSGLRSVNNIVDVTNYVLLEMGHPLHAFDYDLVKGKKIVVRMAQEGEIFETLDGKERILKDSHLVIADSEKPIAIAG VMGGRNSEVSEKTTNIILESAFFDPIFVRKTSKQLGLQTDASKRFERGTDPNQLISVLNRAAMLIQMVAGGIIEDSILDE QTKDFLELTIRCRLSRINQILGTTLSRGEVETIFQSLGFHYQWDGQDSFMVCVPTYRTDVKEEIDLIEEVARIYGYDHIP RNGGRYQTSKLPDAPIYLFEKEIQSYLIAEGLQEFITCDLIGPTLVNVVQNLSMPAEAIVKVLNPTSIEQSILRTSLLPG LLQVVKYNLDHQNHQINGFEIGRIHFKDGDQYQEQSVVGILLSGFSQPYHFEEKKREYDFYDLKGIIENLLKELGIEKPQ FKNLDLKTFHSGRQASLFVDELEVGSFGEVHPSIQRRLDVSQRILFGEFNLHDLMQVATKLEKVKPLAIYPGSERDWTFT IKTSVPFAEIIKAIHEQKSDLLENVLLLDIYRSEKLTVGHQNMTLRFIYRDFSKTIAQEVVENEHQRLKTAVSQKFANDL KQ
Sequences:
>Translated_802_residues MVIMRIPLSWLKEYIDLNLEPVEIAKILTMAGLEVDGYEEIGKGFSGVIVGDVLEVEKHPNADKLLIALVSDGKEIHQVV CGASNCRKGLKTAFAPVGASLIDEGKEFKIKKGKLRGIESNGMLCSAKELQISNEDDGIMELSEHLQAGTALNTLYSDTI FEISLTPNLGHCASIVGVARELSAATSHPLRYPHLVFKEEGNLINNSLTLDIEAKEACSRYTCRVIKNVKVGASPDWLKA KIEKSGLRSVNNIVDVTNYVLLEMGHPLHAFDYDLVKGKKIVVRMAQEGEIFETLDGKERILKDSHLVIADSEKPIAIAG VMGGRNSEVSEKTTNIILESAFFDPIFVRKTSKQLGLQTDASKRFERGTDPNQLISVLNRAAMLIQMVAGGIIEDSILDE QTKDFLELTIRCRLSRINQILGTTLSRGEVETIFQSLGFHYQWDGQDSFMVCVPTYRTDVKEEIDLIEEVARIYGYDHIP RNGGRYQTSKLPDAPIYLFEKEIQSYLIAEGLQEFITCDLIGPTLVNVVQNLSMPAEAIVKVLNPTSIEQSILRTSLLPG LLQVVKYNLDHQNHQINGFEIGRIHFKDGDQYQEQSVVGILLSGFSQPYHFEEKKREYDFYDLKGIIENLLKELGIEKPQ FKNLDLKTFHSGRQASLFVDELEVGSFGEVHPSIQRRLDVSQRILFGEFNLHDLMQVATKLEKVKPLAIYPGSERDWTFT IKTSVPFAEIIKAIHEQKSDLLENVLLLDIYRSEKLTVGHQNMTLRFIYRDFSKTIAQEVVENEHQRLKTAVSQKFANDL KQ >Mature_802_residues MVIMRIPLSWLKEYIDLNLEPVEIAKILTMAGLEVDGYEEIGKGFSGVIVGDVLEVEKHPNADKLLIALVSDGKEIHQVV CGASNCRKGLKTAFAPVGASLIDEGKEFKIKKGKLRGIESNGMLCSAKELQISNEDDGIMELSEHLQAGTALNTLYSDTI FEISLTPNLGHCASIVGVARELSAATSHPLRYPHLVFKEEGNLINNSLTLDIEAKEACSRYTCRVIKNVKVGASPDWLKA KIEKSGLRSVNNIVDVTNYVLLEMGHPLHAFDYDLVKGKKIVVRMAQEGEIFETLDGKERILKDSHLVIADSEKPIAIAG VMGGRNSEVSEKTTNIILESAFFDPIFVRKTSKQLGLQTDASKRFERGTDPNQLISVLNRAAMLIQMVAGGIIEDSILDE QTKDFLELTIRCRLSRINQILGTTLSRGEVETIFQSLGFHYQWDGQDSFMVCVPTYRTDVKEEIDLIEEVARIYGYDHIP RNGGRYQTSKLPDAPIYLFEKEIQSYLIAEGLQEFITCDLIGPTLVNVVQNLSMPAEAIVKVLNPTSIEQSILRTSLLPG LLQVVKYNLDHQNHQINGFEIGRIHFKDGDQYQEQSVVGILLSGFSQPYHFEEKKREYDFYDLKGIIENLLKELGIEKPQ FKNLDLKTFHSGRQASLFVDELEVGSFGEVHPSIQRRLDVSQRILFGEFNLHDLMQVATKLEKVKPLAIYPGSERDWTFT IKTSVPFAEIIKAIHEQKSDLLENVLLLDIYRSEKLTVGHQNMTLRFIYRDFSKTIAQEVVENEHQRLKTAVSQKFANDL KQ
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1788006, Length=808, Percent_Identity=35.519801980198, Blast_Score=468, Evalue=1e-133,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005146 - InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004532 - InterPro: IPR020825 - InterPro: IPR005121 - InterPro: IPR002547 [H]
Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind [H]
EC number: =6.1.1.20 [H]
Molecular weight: Translated: 90199; Mature: 90199
Theoretical pI: Translated: 5.57; Mature: 5.57
Prosite motif: PS50886 TRBD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVIMRIPLSWLKEYIDLNLEPVEIAKILTMAGLEVDGYEEIGKGFSGVIVGDVLEVEKHP CEEEECCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHCCCCCCEEEHHHHHHCCCC NADKLLIALVSDGKEIHQVVCGASNCRKGLKTAFAPVGASLIDEGKEFKIKKGKLRGIES CCCCEEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHCCHHHHCCCCCEEEECCCCCCCCC NGMLCSAKELQISNEDDGIMELSEHLQAGTALNTLYSDTIFEISLTPNLGHCASIVGVAR CCCEEEHHHCEECCCCCHHHHHHHHHHHCHHHHHHHCCEEEEEEECCCCHHHHHHHHHHH ELSAATSHPLRYPHLVFKEEGNLINNSLTLDIEAKEACSRYTCRVIKNVKVGASPDWLKA HHHHHCCCCCCCCCEEEECCCCEECCEEEEEEEHHHHHHHHHHHHHHCCCCCCCCHHHHH KIEKSGLRSVNNIVDVTNYVLLEMGHPLHAFDYDLVKGKKIVVRMAQEGEIFETLDGKER HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCEEEEEECCCCCHHHHCCCHHH ILKDSHLVIADSEKPIAIAGVMGGRNSEVSEKTTNIILESAFFDPIFVRKTSKQLGLQTD HHCCCEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECHHHHCCCCC ASKRFERGTDPNQLISVLNRAAMLIQMVAGGIIEDSILDEQTKDFLELTIRCRLSRINQI HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGTTLSRGEVETIFQSLGFHYQWDGQDSFMVCVPTYRTDVKEEIDLIEEVARIYGYDHIP HHCCCCCCHHHHHHHHCCCEEEECCCCCEEEEECCHHCCHHHHHHHHHHHHHHHCCCCCC RNGGRYQTSKLPDAPIYLFEKEIQSYLIAEGLQEFITCDLIGPTLVNVVQNLSMPAEAIV CCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHH KVLNPTSIEQSILRTSLLPGLLQVVKYNLDHQNHQINGFEIGRIHFKDGDQYQEQSVVGI HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCEEEEEEEECCCCCHHHHHHHHH LLSGFSQPYHFEEKKREYDFYDLKGIIENLLKELGIEKPQFKNLDLKTFHSGRQASLFVD HHHCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCEEEEE ELEVGSFGEVHPSIQRRLDVSQRILFGEFNLHDLMQVATKLEKVKPLAIYPGSERDWTFT CCCCCCCCCCCHHHHHHHCHHHHHEEECCCHHHHHHHHHHHHHCCCEEEECCCCCCEEEE IKTSVPFAEIIKAIHEQKSDLLENVLLLDIYRSEKLTVGHQNMTLRFIYRDFSKTIAQEV EECCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEECCCCCEEEHHHHHHHHHHHHHH VENEHQRLKTAVSQKFANDLKQ HHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MVIMRIPLSWLKEYIDLNLEPVEIAKILTMAGLEVDGYEEIGKGFSGVIVGDVLEVEKHP CEEEECCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHCCCCCCEEEHHHHHHCCCC NADKLLIALVSDGKEIHQVVCGASNCRKGLKTAFAPVGASLIDEGKEFKIKKGKLRGIES CCCCEEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHCCHHHHCCCCCEEEECCCCCCCCC NGMLCSAKELQISNEDDGIMELSEHLQAGTALNTLYSDTIFEISLTPNLGHCASIVGVAR CCCEEEHHHCEECCCCCHHHHHHHHHHHCHHHHHHHCCEEEEEEECCCCHHHHHHHHHHH ELSAATSHPLRYPHLVFKEEGNLINNSLTLDIEAKEACSRYTCRVIKNVKVGASPDWLKA HHHHHCCCCCCCCCEEEECCCCEECCEEEEEEEHHHHHHHHHHHHHHCCCCCCCCHHHHH KIEKSGLRSVNNIVDVTNYVLLEMGHPLHAFDYDLVKGKKIVVRMAQEGEIFETLDGKER HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCEEEEEECCCCCHHHHCCCHHH ILKDSHLVIADSEKPIAIAGVMGGRNSEVSEKTTNIILESAFFDPIFVRKTSKQLGLQTD HHCCCEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECHHHHCCCCC ASKRFERGTDPNQLISVLNRAAMLIQMVAGGIIEDSILDEQTKDFLELTIRCRLSRINQI HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGTTLSRGEVETIFQSLGFHYQWDGQDSFMVCVPTYRTDVKEEIDLIEEVARIYGYDHIP HHCCCCCCHHHHHHHHCCCEEEECCCCCEEEEECCHHCCHHHHHHHHHHHHHHHCCCCCC RNGGRYQTSKLPDAPIYLFEKEIQSYLIAEGLQEFITCDLIGPTLVNVVQNLSMPAEAIV CCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHH KVLNPTSIEQSILRTSLLPGLLQVVKYNLDHQNHQINGFEIGRIHFKDGDQYQEQSVVGI HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCEEEEEEEECCCCCHHHHHHHHH LLSGFSQPYHFEEKKREYDFYDLKGIIENLLKELGIEKPQFKNLDLKTFHSGRQASLFVD HHHCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCEEEEE ELEVGSFGEVHPSIQRRLDVSQRILFGEFNLHDLMQVATKLEKVKPLAIYPGSERDWTFT CCCCCCCCCCCHHHHHHHCHHHHHEEECCCHHHHHHHHHHHHHCCCEEEECCCCCCEEEE IKTSVPFAEIIKAIHEQKSDLLENVLLLDIYRSEKLTVGHQNMTLRFIYRDFSKTIAQEV EECCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEECCCCCEEEHHHHHHHHHHHHHH VENEHQRLKTAVSQKFANDLKQ HHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA