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The map label for this gene is nqrD [H]

Identifier: 46445933

GI number: 46445933

Start: 412043

End: 412678

Strand: Reverse

Name: nqrD [H]

Synonym: pc0299

Alternate gene names: 46445933

Gene position: 412678-412043 (Counterclockwise)

Preceding gene: 46445934

Following gene: 46445932

Centisome position: 17.09

GC content: 36.79

Gene sequence:

>636_bases
ATGAGCCAGCCCGAACCTCCAGTTTCGAGTTATTTTACCTCGCAAATTTGGTCTAGTAACCAAGTTTTAGTAGCTGTTTT
GGGAATTTGTTCTGCCTTAGCGATTACCAATCGATTAAGTGTTGCCATTACGATGGGGCTTTCAGTATCATTTGTCACAG
CTTTTTCCTCTCTTTTTGTTTCCTTACTGAGAAAAATTACTCCAGACAGTGTTCGCATGATCGTTCAATTAGCAATTATT
TCCGTTTTTGTCATTATTATTGATCAGTTTTTACAAGCTTATTTTTTTGGTATTTCTAAAGTTTTAAGTGTATTTGTTGG
ATTAATTATTACAAATTGCATTGTGATGGGAAGAACAGAAGGAATGGCGAAAAATGTAGGGCCTTTAGCAGCTTTTTTAG
ACGGGTTAGGTGCTGGAACGGGCTATGCCATTGTCTTATTCATTATTGCTTTTATTAGAGAATTATTTGGATTTGGCCAA
CTATTTGGTTATCAAGTTATCCCTCAATCATGGTATGCCACAGCAGCAAATCCTGACGGCTATGAAAACTTTGTTCTAAT
GGTTAGTCCTCCGGCAGCTTTTTTTCTGATCGGTGGTCTCATTTACGTATCTAAAAAAATGCAAGGTAATGCTTAA

Upstream 100 bases:

>100_bases
AGTTACAAACGCATATAAAAATGTCTTAGCAGCTTACAGGCCTTTTTTAATTAAATCTCAAGATAAATTTGCTAAAATTC
AATCACAATAAAGGGAATTC

Downstream 100 bases:

>100_bases
TACCATTTATTGAAAAGAGGAGACTTTGTCATGTGGATGGGACCCTACAGCGTGCTAAACCTTTTTGGTTTGTTATTACA
AGCTGTATTTATTGAGAACT

Product: Na(+)-translocating NADH-quinone reductase subunit D

Products: NA

Alternate protein names: Na(+)-NQR subunit D; Na(+)-translocating NQR subunit D; NQR complex subunit D; NQR-1 subunit D [H]

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MSQPEPPVSSYFTSQIWSSNQVLVAVLGICSALAITNRLSVAITMGLSVSFVTAFSSLFVSLLRKITPDSVRMIVQLAII
SVFVIIIDQFLQAYFFGISKVLSVFVGLIITNCIVMGRTEGMAKNVGPLAAFLDGLGAGTGYAIVLFIIAFIRELFGFGQ
LFGYQVIPQSWYATAANPDGYENFVLMVSPPAAFFLIGGLIYVSKKMQGNA

Sequences:

>Translated_211_residues
MSQPEPPVSSYFTSQIWSSNQVLVAVLGICSALAITNRLSVAITMGLSVSFVTAFSSLFVSLLRKITPDSVRMIVQLAII
SVFVIIIDQFLQAYFFGISKVLSVFVGLIITNCIVMGRTEGMAKNVGPLAAFLDGLGAGTGYAIVLFIIAFIRELFGFGQ
LFGYQVIPQSWYATAANPDGYENFVLMVSPPAAFFLIGGLIYVSKKMQGNA
>Mature_210_residues
SQPEPPVSSYFTSQIWSSNQVLVAVLGICSALAITNRLSVAITMGLSVSFVTAFSSLFVSLLRKITPDSVRMIVQLAIIS
VFVIIIDQFLQAYFFGISKVLSVFVGLIITNCIVMGRTEGMAKNVGPLAAFLDGLGAGTGYAIVLFIIAFIRELFGFGQL
FGYQVIPQSWYATAANPDGYENFVLMVSPPAAFFLIGGLIYVSKKMQGNA

Specific function: NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to nqrE are probably involved in the second step, the conversion of ubisemiqui

COG id: COG1347

COG function: function code C; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=200, Percent_Identity=33, Blast_Score=103, Evalue=6e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011292 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 22735; Mature: 22604

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQPEPPVSSYFTSQIWSSNQVLVAVLGICSALAITNRLSVAITMGLSVSFVTAFSSLFV
CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHH
SLLRKITPDSVRMIVQLAIISVFVIIIDQFLQAYFFGISKVLSVFVGLIITNCIVMGRTE
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GMAKNVGPLAAFLDGLGAGTGYAIVLFIIAFIRELFGFGQLFGYQVIPQSWYATAANPDG
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCC
YENFVLMVSPPAAFFLIGGLIYVSKKMQGNA
CCCEEEEECCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SQPEPPVSSYFTSQIWSSNQVLVAVLGICSALAITNRLSVAITMGLSVSFVTAFSSLFV
CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHH
SLLRKITPDSVRMIVQLAIISVFVIIIDQFLQAYFFGISKVLSVFVGLIITNCIVMGRTE
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GMAKNVGPLAAFLDGLGAGTGYAIVLFIIAFIRELFGFGQLFGYQVIPQSWYATAANPDG
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCC
YENFVLMVSPPAAFFLIGGLIYVSKKMQGNA
CCCEEEEECCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA