| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46445913
Identifier: 46445913
GI number: 46445913
Start: 390366
End: 391883
Strand: Direct
Name: 46445913
Synonym: pc0279
Alternate gene names: NA
Gene position: 390366-391883 (Clockwise)
Preceding gene: 46445912
Following gene: 46445914
Centisome position: 16.17
GC content: 34.85
Gene sequence:
>1518_bases TTGGAGGCAGGTACTTTTATTTCGTCGTTATTTCCAAGATGCGGGTCACTCTGCCTTAGTCGATACGTTAGCTTATCAAG TATTAATAATTATTCGCATGAAAGTGTCACGGTTGATTTATATCGTCTTCCTGCTGCTCTAAAATTTGCTAATTATGATT CGCTTCAAAAATTTGAAGTCTATTTAAATATTGTTGGTAAAGGAGATCGTAAAGATTCACTTTCACTTCCAGAAGAATTT TTAGATGTAGTAGAAGTAGAAAGTGTTTATCCCGAACTTGTTCAAAAACGTTACGAATTAGAGGTCGCTCAAGTTTCTCA AAAAGCTTTACAGGCTCGTATTGGAATTAAAGAGTTATGGAGTTGGGAAGTTGATGATAAGAATTGGGAAATACTTAAAG CTCAATTTCCAGATTTAGCTTTAAGAAAAGCAATCACTCGTGAAGAACGTTTTAGTGTTTTAGATGACTTAGATAAAACA ACGCGTTCGAAAGTCGATAGGTTTGCAAAAGAGGCTATAGTTCGCTCTCATCCAGAGTGGATTCTTGAAGGCTTATCTAA AGTGAATTCTCAAAAAATGAATGTTGGACTGCGAACAACTGGTGGTAAAATTCCTTTTACAGGGTTGGATAAGAAGGAAA AACGCCAAGAATTTATGCAATTACTAGATCATGCTATATTAGGGGCGGCTCCTACGGATGACTTGAAAGCATATACAGCT GATAATCAAAATTACTACCAGATTAAAGTATTAAATCGTGCTCCTCAATCTGAAATTTTAACTTTTGAAGAAGCCAATCA AGATGGAACGATGGATGAAGTACGTATGAAAGCTTTAGAAAAATATTACTTGGCAATCAGAGAGCAAAATCCTAGCACTT ATCAAAAAGAAAATCAAGAATGGAAACCTTTTAAAAGTGTTCGAGAATTAGTTGCAGACGATTATTTTAGTAAGGTTTTA ATAGCTTTACAACCTGCTCAGAAAACTCTCTTAGCTAGTGAGAAGGAAACTGCAAATTGGAGTAAAGATCAAGCGGCGTC TCTTCGACTTTACTCCTATGTTCAACATATTAAAGCGAGACTAGAAAAAGATCCTTCATTAGCAACTCTATATGTAAAAA ACCAAGAGTTAGAGCAAAAACCTGCATCCTTAAAAGATCAATGGTTATTAGAACGGACAAATGTCTCTTTAACTCGTCAA GATCAAAAAGATGGTATCAATACAGAAGAAGCTTTTATTCTTCCTGTAACGGCTTGGTCCAATTTATCCACTCCAGTTAA TGGAGATTTAGCATTTTTCCAAGTTAAAGAAAAAGGGGAAGATGTTTCTAAAAAGGAAGTTGCTATTGCTGAGCAAACTA AAAAAGCTCAAGCCATTTTATCAATAGATGCTCAAAAAGTGTTAATGCACCACATCTTAGATAAAATTAAAGCTAAAGAT GCTATTTCATTAAGTTACCTTCAAGTTTCCCAAGAGACTTCAACAGACGAATCAGCATTAGCAAATCCTGATTTTTAA
Upstream 100 bases:
>100_bases AAAATCAAAATAATCCTTCAATTGGAGTACCTTCTCCAGAAGAATATTTCAATGAGCAGTTACGCCTCTTGAATATGGAT CAGGCGAGAGCAATCAAAGT
Downstream 100 bases:
>100_bases ATATTAAGAATCAGGAATCATATAACAATGATGGTTCCTGATTCTTTTTTACACGAAAGGGAAATTCTAGTTTTATGGAT GAAAATGAATCTTTTTCTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 505; Mature: 505
Protein sequence:
>505_residues MEAGTFISSLFPRCGSLCLSRYVSLSSINNYSHESVTVDLYRLPAALKFANYDSLQKFEVYLNIVGKGDRKDSLSLPEEF LDVVEVESVYPELVQKRYELEVAQVSQKALQARIGIKELWSWEVDDKNWEILKAQFPDLALRKAITREERFSVLDDLDKT TRSKVDRFAKEAIVRSHPEWILEGLSKVNSQKMNVGLRTTGGKIPFTGLDKKEKRQEFMQLLDHAILGAAPTDDLKAYTA DNQNYYQIKVLNRAPQSEILTFEEANQDGTMDEVRMKALEKYYLAIREQNPSTYQKENQEWKPFKSVRELVADDYFSKVL IALQPAQKTLLASEKETANWSKDQAASLRLYSYVQHIKARLEKDPSLATLYVKNQELEQKPASLKDQWLLERTNVSLTRQ DQKDGINTEEAFILPVTAWSNLSTPVNGDLAFFQVKEKGEDVSKKEVAIAEQTKKAQAILSIDAQKVLMHHILDKIKAKD AISLSYLQVSQETSTDESALANPDF
Sequences:
>Translated_505_residues MEAGTFISSLFPRCGSLCLSRYVSLSSINNYSHESVTVDLYRLPAALKFANYDSLQKFEVYLNIVGKGDRKDSLSLPEEF LDVVEVESVYPELVQKRYELEVAQVSQKALQARIGIKELWSWEVDDKNWEILKAQFPDLALRKAITREERFSVLDDLDKT TRSKVDRFAKEAIVRSHPEWILEGLSKVNSQKMNVGLRTTGGKIPFTGLDKKEKRQEFMQLLDHAILGAAPTDDLKAYTA DNQNYYQIKVLNRAPQSEILTFEEANQDGTMDEVRMKALEKYYLAIREQNPSTYQKENQEWKPFKSVRELVADDYFSKVL IALQPAQKTLLASEKETANWSKDQAASLRLYSYVQHIKARLEKDPSLATLYVKNQELEQKPASLKDQWLLERTNVSLTRQ DQKDGINTEEAFILPVTAWSNLSTPVNGDLAFFQVKEKGEDVSKKEVAIAEQTKKAQAILSIDAQKVLMHHILDKIKAKD AISLSYLQVSQETSTDESALANPDF >Mature_505_residues MEAGTFISSLFPRCGSLCLSRYVSLSSINNYSHESVTVDLYRLPAALKFANYDSLQKFEVYLNIVGKGDRKDSLSLPEEF LDVVEVESVYPELVQKRYELEVAQVSQKALQARIGIKELWSWEVDDKNWEILKAQFPDLALRKAITREERFSVLDDLDKT TRSKVDRFAKEAIVRSHPEWILEGLSKVNSQKMNVGLRTTGGKIPFTGLDKKEKRQEFMQLLDHAILGAAPTDDLKAYTA DNQNYYQIKVLNRAPQSEILTFEEANQDGTMDEVRMKALEKYYLAIREQNPSTYQKENQEWKPFKSVRELVADDYFSKVL IALQPAQKTLLASEKETANWSKDQAASLRLYSYVQHIKARLEKDPSLATLYVKNQELEQKPASLKDQWLLERTNVSLTRQ DQKDGINTEEAFILPVTAWSNLSTPVNGDLAFFQVKEKGEDVSKKEVAIAEQTKKAQAILSIDAQKVLMHHILDKIKAKD AISLSYLQVSQETSTDESALANPDF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57610; Mature: 57610
Theoretical pI: Translated: 5.49; Mature: 5.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEAGTFISSLFPRCGSLCLSRYVSLSSINNYSHESVTVDLYRLPAALKFANYDSLQKFEV CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHCCHHHHHCCCCCHHEEEE YLNIVGKGDRKDSLSLPEEFLDVVEVESVYPELVQKRYELEVAQVSQKALQARIGIKELW EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH SWEVDDKNWEILKAQFPDLALRKAITREERFSVLDDLDKTTRSKVDRFAKEAIVRSHPEW CCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH ILEGLSKVNSQKMNVGLRTTGGKIPFTGLDKKEKRQEFMQLLDHAILGAAPTDDLKAYTA HHHHHHHHCCHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEC DNQNYYQIKVLNRAPQSEILTFEEANQDGTMDEVRMKALEKYYLAIREQNPSTYQKENQE CCCCEEEEEEECCCCHHHEEEHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCC WKPFKSVRELVADDYFSKVLIALQPAQKTLLASEKETANWSKDQAASLRLYSYVQHIKAR CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH LEKDPSLATLYVKNQELEQKPASLKDQWLLERTNVSLTRQDQKDGINTEEAFILPVTAWS HCCCCCEEEEEEECCHHHCCCCCCHHHHHHHHCCCCEEECHHHCCCCCCCEEEEEEEECC NLSTPVNGDLAFFQVKEKGEDVSKKEVAIAEQTKKAQAILSIDAQKVLMHHILDKIKAKD CCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC AISLSYLQVSQETSTDESALANPDF CCEEHHEEECCCCCCCCCCCCCCCC >Mature Secondary Structure MEAGTFISSLFPRCGSLCLSRYVSLSSINNYSHESVTVDLYRLPAALKFANYDSLQKFEV CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHCCHHHHHCCCCCHHEEEE YLNIVGKGDRKDSLSLPEEFLDVVEVESVYPELVQKRYELEVAQVSQKALQARIGIKELW EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH SWEVDDKNWEILKAQFPDLALRKAITREERFSVLDDLDKTTRSKVDRFAKEAIVRSHPEW CCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH ILEGLSKVNSQKMNVGLRTTGGKIPFTGLDKKEKRQEFMQLLDHAILGAAPTDDLKAYTA HHHHHHHHCCHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEC DNQNYYQIKVLNRAPQSEILTFEEANQDGTMDEVRMKALEKYYLAIREQNPSTYQKENQE CCCCEEEEEEECCCCHHHEEEHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCC WKPFKSVRELVADDYFSKVLIALQPAQKTLLASEKETANWSKDQAASLRLYSYVQHIKAR CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH LEKDPSLATLYVKNQELEQKPASLKDQWLLERTNVSLTRQDQKDGINTEEAFILPVTAWS HCCCCCEEEEEEECCHHHCCCCCCHHHHHHHHCCCCEEECHHHCCCCCCCEEEEEEEECC NLSTPVNGDLAFFQVKEKGEDVSKKEVAIAEQTKKAQAILSIDAQKVLMHHILDKIKAKD CCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC AISLSYLQVSQETSTDESALANPDF CCEEHHEEECCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA