| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is gltX
Identifier: 46445878
GI number: 46445878
Start: 342450
End: 343958
Strand: Reverse
Name: gltX
Synonym: pc0244
Alternate gene names: 46445878
Gene position: 343958-342450 (Counterclockwise)
Preceding gene: 46445879
Following gene: 46445877
Centisome position: 14.25
GC content: 38.1
Gene sequence:
>1509_bases ATGTCAGTTCGCGTGCGCATTGCGCCTTCTCCAACAGGTGATCCCCACGTTGGAACAGCCTATATGGCTTTGTTTAATAT GATTTTTGCACGTCATTACAATGGAACATTTATTCTTCGTATTGAAGATACAGATCGGGCTCGTAGCCGACCAGAATATG AAGAAAATATTTATTCAGCCCTCAAATGGGCAAATATCCAATGGGATGAAGGCCCTGATATTGGGGGTGCTTATGGTCCT TACCGACAATCAGAAAGATTTGATATTTATAAACAATATGCTGAAGAACTTTTATCTAAAGGGAAAGCCTATAAATGTTT TTGCACTGCTGCTGAACTTGATGAAATGAGAGAATTGAGCGCTAAACAGGGTGGAAGACAAGGTTATGATAGACGTTGCA GACACCTGACTCCTGATGAGATAATTGAGAGAGAGCAAGCCGAGCTTTCGTATGTTATTCGTTTAAAAGTCCCTTTAAAC GGTGAATGTGTTTATGAAGATGCGATTAAAAAACGAATGACCTTTCCTTGGGCTGATATAGACGATCAAGTTCTTCTCAA ATCAGATGGTTTTCCCACCTACCACCTGGCAAACGTTGTCGATGATTATCTTATGAAAATTTCTCATGTGATTCGAGGCG ATGAATGGATGAGTTCTACTCCAAAGCACATCTTGCTATATGAATCCTTTGGATGGACTCCTCCAACGTTCTTGCATATG CCTCTTTTATTAGGTAAAGATGGTAAAAAATTGTCTAAACGAAAAAATCCGACTTCCATTTTTTTTTATAGAGATAGCGG TTATTTATCCGAAGCTTTCATCAATTTCTTAACATTGATGGGCTATAGTATGACTGGCGATCAAGAAATTTATAGCTTAG ATGACATTATACGAGAATTTGATTACAAGCGGATTGGCGTCTCCGGAGCTATTTTTGATGTGCAGAAGTTAGACTGGGTG AACCAACAGTACCTCATTAAAAATATTCCTGTTGAGCAACTTTGGGATAGGATCAAAGAATGGAGCTTTAACGATGAATT TATGCAACGCCTAATGCCTCTTTGCCATTCTCGCATTAAAACTTTTGGCGATTTTATGGATCTGTTTAACTTTTTATTCA TCAATCATCTTCATTATAATGATGCGATATTTGTCGTTAAAGATCTATCTAAAGAACAAATTTGCTACTTGATTCAATCT TTAATTTGGCGTTTGGATGAATTAGAAAATTGGAACGGAACAGGTGTTAATCAAGCTTCCAGAGAGATTGCAGAAATATT TGGAGTCAATCATAAGAAAATTGTCATGCCAATTCTCTTTGCTAGTTTGATGAGTAAAACACAAGGTCCTCCTCTCTTTG ATTCCGTCAACCTTTTAGGGAAAGATCGTACACGTGCGCGACTGCTTAAAGCGATGGAATATTTAGGAGGAATTTCAAAT AAAAAAATGGCCAGCCTCAAAAAGGCCTGGCAAGAAAAAAGCGGTCAACCGCTCATGATCAAGGATTAA
Upstream 100 bases:
>100_bases ATTTGTAAAAAGAATTGTTAAATACAAATTCACCCACTATTTATTAAACCTTCTTATTTAGAAGGGTCACTACAGATTTT AAAGAAAAGGCCTTAGTTTT
Downstream 100 bases:
>100_bases AAATTCTTTTAATTAATGCTGGATGAATGAGATTTAATTCAGCATTGATTTATGCAAGTATAGGAGAGATAAAATGGATA TGACTGCACATGCTTTTTCT
Product: glutamyl-tRNA synthetase
Products: NA
Alternate protein names: Glutamate--tRNA ligase; GluRS
Number of amino acids: Translated: 502; Mature: 501
Protein sequence:
>502_residues MSVRVRIAPSPTGDPHVGTAYMALFNMIFARHYNGTFILRIEDTDRARSRPEYEENIYSALKWANIQWDEGPDIGGAYGP YRQSERFDIYKQYAEELLSKGKAYKCFCTAAELDEMRELSAKQGGRQGYDRRCRHLTPDEIIEREQAELSYVIRLKVPLN GECVYEDAIKKRMTFPWADIDDQVLLKSDGFPTYHLANVVDDYLMKISHVIRGDEWMSSTPKHILLYESFGWTPPTFLHM PLLLGKDGKKLSKRKNPTSIFFYRDSGYLSEAFINFLTLMGYSMTGDQEIYSLDDIIREFDYKRIGVSGAIFDVQKLDWV NQQYLIKNIPVEQLWDRIKEWSFNDEFMQRLMPLCHSRIKTFGDFMDLFNFLFINHLHYNDAIFVVKDLSKEQICYLIQS LIWRLDELENWNGTGVNQASREIAEIFGVNHKKIVMPILFASLMSKTQGPPLFDSVNLLGKDRTRARLLKAMEYLGGISN KKMASLKKAWQEKSGQPLMIKD
Sequences:
>Translated_502_residues MSVRVRIAPSPTGDPHVGTAYMALFNMIFARHYNGTFILRIEDTDRARSRPEYEENIYSALKWANIQWDEGPDIGGAYGP YRQSERFDIYKQYAEELLSKGKAYKCFCTAAELDEMRELSAKQGGRQGYDRRCRHLTPDEIIEREQAELSYVIRLKVPLN GECVYEDAIKKRMTFPWADIDDQVLLKSDGFPTYHLANVVDDYLMKISHVIRGDEWMSSTPKHILLYESFGWTPPTFLHM PLLLGKDGKKLSKRKNPTSIFFYRDSGYLSEAFINFLTLMGYSMTGDQEIYSLDDIIREFDYKRIGVSGAIFDVQKLDWV NQQYLIKNIPVEQLWDRIKEWSFNDEFMQRLMPLCHSRIKTFGDFMDLFNFLFINHLHYNDAIFVVKDLSKEQICYLIQS LIWRLDELENWNGTGVNQASREIAEIFGVNHKKIVMPILFASLMSKTQGPPLFDSVNLLGKDRTRARLLKAMEYLGGISN KKMASLKKAWQEKSGQPLMIKD >Mature_501_residues SVRVRIAPSPTGDPHVGTAYMALFNMIFARHYNGTFILRIEDTDRARSRPEYEENIYSALKWANIQWDEGPDIGGAYGPY RQSERFDIYKQYAEELLSKGKAYKCFCTAAELDEMRELSAKQGGRQGYDRRCRHLTPDEIIEREQAELSYVIRLKVPLNG ECVYEDAIKKRMTFPWADIDDQVLLKSDGFPTYHLANVVDDYLMKISHVIRGDEWMSSTPKHILLYESFGWTPPTFLHMP LLLGKDGKKLSKRKNPTSIFFYRDSGYLSEAFINFLTLMGYSMTGDQEIYSLDDIIREFDYKRIGVSGAIFDVQKLDWVN QQYLIKNIPVEQLWDRIKEWSFNDEFMQRLMPLCHSRIKTFGDFMDLFNFLFINHLHYNDAIFVVKDLSKEQICYLIQSL IWRLDELENWNGTGVNQASREIAEIFGVNHKKIVMPILFASLMSKTQGPPLFDSVNLLGKDRTRARLLKAMEYLGGISNK KMASLKKAWQEKSGQPLMIKD
Specific function: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction:glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
COG id: COG0008
COG function: function code J; Glutamyl- and glutaminyl-tRNA synthetases
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family
Homologues:
Organism=Homo sapiens, GI134288884, Length=498, Percent_Identity=33.5341365461847, Blast_Score=280, Evalue=2e-75, Organism=Escherichia coli, GI1788743, Length=492, Percent_Identity=33.5365853658537, Blast_Score=288, Evalue=7e-79, Organism=Escherichia coli, GI226510925, Length=295, Percent_Identity=29.8305084745763, Blast_Score=121, Evalue=1e-28, Organism=Caenorhabditis elegans, GI71993394, Length=492, Percent_Identity=35.5691056910569, Blast_Score=287, Evalue=7e-78, Organism=Saccharomyces cerevisiae, GI6324540, Length=505, Percent_Identity=35.6435643564356, Blast_Score=281, Evalue=2e-76, Organism=Saccharomyces cerevisiae, GI6324742, Length=247, Percent_Identity=27.9352226720648, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI24665321, Length=491, Percent_Identity=35.030549898167, Blast_Score=294, Evalue=7e-80,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): SYE_PARUW (Q6MEN1)
Other databases:
- EMBL: BX908798 - RefSeq: YP_007243.1 - ProteinModelPortal: Q6MEN1 - STRING: Q6MEN1 - GeneID: 2781428 - GenomeReviews: BX908798_GR - KEGG: pcu:pc0244 - NMPDR: fig|264201.1.peg.244 - eggNOG: COG0008 - HOGENOM: HBG628189 - OMA: YRCFTSE - PhylomeDB: Q6MEN1 - ProtClustDB: PRK01406 - BioCyc: CPRO264201:PC0244-MONOMER - GO: GO:0005737 - HAMAP: MF_00022_B - InterPro: IPR008925 - InterPro: IPR020751 - InterPro: IPR001412 - InterPro: IPR004527 - InterPro: IPR000924 - InterPro: IPR020061 - InterPro: IPR020058 - InterPro: IPR014729 - Gene3D: G3DSA:1.10.1160.10 - Gene3D: G3DSA:3.40.50.620 - Gene3D: G3DSA:1.10.10.350 - PANTHER: PTHR10119 - PRINTS: PR00987 - TIGRFAMs: TIGR00464
Pfam domain/function: PF00749 tRNA-synt_1c; SSF48163 tRNA-synt_bind
EC number: =6.1.1.17
Molecular weight: Translated: 58421; Mature: 58290
Theoretical pI: Translated: 7.09; Mature: 7.09
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: BINDING 253-253
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVRVRIAPSPTGDPHVGTAYMALFNMIFARHYNGTFILRIEDTDRARSRPEYEENIYSA CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHH LKWANIQWDEGPDIGGAYGPYRQSERFDIYKQYAEELLSKGKAYKCFCTAAELDEMRELS HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHH AKQGGRQGYDRRCRHLTPDEIIEREQAELSYVIRLKVPLNGECVYEDAIKKRMTFPWADI HHCCCCCCHHHHHCCCCHHHHHHHHHCCEEEEEEEEECCCCCEEEHHHHHHHCCCCCCCC DDQVLLKSDGFPTYHLANVVDDYLMKISHVIRGDEWMSSTPKHILLYESFGWTPPTFLHM CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEEECCCCCCCHHHHH PLLLGKDGKKLSKRKNPTSIFFYRDSGYLSEAFINFLTLMGYSMTGDQEIYSLDDIIREF HHHCCCCCHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC DYKRIGVSGAIFDVQKLDWVNQQYLIKNIPVEQLWDRIKEWSFNDEFMQRLMPLCHSRIK CCHHCCCCCCEEHHHHHHHCCHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH TFGDFMDLFNFLFINHLHYNDAIFVVKDLSKEQICYLIQSLIWRLDELENWNGTGVNQAS HHHHHHHHHHHHHHHHEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH REIAEIFGVNHKKIVMPILFASLMSKTQGPPLFDSVNLLGKDRTRARLLKAMEYLGGISN HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCC KKMASLKKAWQEKSGQPLMIKD HHHHHHHHHHHHCCCCEEEECC >Mature Secondary Structure SVRVRIAPSPTGDPHVGTAYMALFNMIFARHYNGTFILRIEDTDRARSRPEYEENIYSA CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHH LKWANIQWDEGPDIGGAYGPYRQSERFDIYKQYAEELLSKGKAYKCFCTAAELDEMRELS HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHH AKQGGRQGYDRRCRHLTPDEIIEREQAELSYVIRLKVPLNGECVYEDAIKKRMTFPWADI HHCCCCCCHHHHHCCCCHHHHHHHHHCCEEEEEEEEECCCCCEEEHHHHHHHCCCCCCCC DDQVLLKSDGFPTYHLANVVDDYLMKISHVIRGDEWMSSTPKHILLYESFGWTPPTFLHM CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEEECCCCCCCHHHHH PLLLGKDGKKLSKRKNPTSIFFYRDSGYLSEAFINFLTLMGYSMTGDQEIYSLDDIIREF HHHCCCCCHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC DYKRIGVSGAIFDVQKLDWVNQQYLIKNIPVEQLWDRIKEWSFNDEFMQRLMPLCHSRIK CCHHCCCCCCEEHHHHHHHCCHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH TFGDFMDLFNFLFINHLHYNDAIFVVKDLSKEQICYLIQSLIWRLDELENWNGTGVNQAS HHHHHHHHHHHHHHHHEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH REIAEIFGVNHKKIVMPILFASLMSKTQGPPLFDSVNLLGKDRTRARLLKAMEYLGGISN HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCC KKMASLKKAWQEKSGQPLMIKD HHHHHHHHHHHHCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA