| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is cocE [H]
Identifier: 46445767
GI number: 46445767
Start: 202912
End: 204597
Strand: Direct
Name: cocE [H]
Synonym: pc0133
Alternate gene names: 46445767
Gene position: 202912-204597 (Clockwise)
Preceding gene: 46445766
Following gene: 46445768
Centisome position: 8.4
GC content: 38.91
Gene sequence:
>1686_bases ATGATGATTCGTTTATATACATGTATTTTTGTATTTCTTTTAAATATTTTAGGGTCTGAGGAGCTTAAACCAGATTTAAC AATCATGGTTCCCATGAGAGATGGAGTATCTCTTCCCACAGATCTTTATTTGCCAACTCCAGAAGCTCGAAATCTTCCTT GCATTTTGATTAGAAGCCCTGCTGGTCGCGATTCGACATGGAAAAGTTTCGCCTCAATGGCAAAAGCAGGATATGTGATT GCAATTCAAGATACGCGTAGTGTATTAGATCTTGAAGGAAAAACATTTCCTTTTTTGTCAGATGGATGGGGAAAATTGCA AGATGGATATGATGCGGTAGAATGGCTGGCTAAAAGTCCCTATACGAATGGAAAAATTGGAACATGGGGTTCTTCAGCTG TAGGAATCACGCAACTACTCCTGGCTCCCACTCAACCTCCGCATTTGGTTTGCCAATACATTATTGTAGCTGCAGCGAGT TTATATCATCATGGACTTTTTCCTGGAGGACTTTTGCTCAAGCATCAAGCTGAAAGTTGGCTTGGTTATTACGCTCGTGA CACTGGTGTTCTTAATTACGTTTCTCAACGGCCTTTCTATAACGAGTTTTGGAAACAATTAAATACCTCTGAAATGGCCC ATCGAGTGAAAATCCCCGGAATGTTAGTCGCAGGTTGGTATGATACTTTCTTACAAGGAACTTTAGATGCATTTGAAGCA AGACAACGAGAAGGTGAAGAAGGGGCTAAAGGAAAACAAAAATTAATTATTGGCCCTTGGACACACTTTTGGCCTTTATC TAATCATTTCGGTGATTTTAAAATCCCTGTTGCAGGGGAAAATCCTCCTATGGATATTTCTCCAAAACGTTGGTTTGATC ATTATTTAAAGGGAGAAGTAAATGAAGTTGAATCTCTACCGCCCGTCCTTTATTATGTGATGGGGCCATTTGATGGATCA ACTTCAAGCGGAAATATTTGGCGTACATCTGAGGTATGGCCTGTACCCACTGTGGCTACAGCTTTTTATTTAACTTCTCA ACACACACTTCAACAAACTCCTCCCTCTCTAGGCCTTTTAGCTTATACGTATGACCCAACTAACCCTATTCCCACTAGAG GTGGGCGTAATTTATTTTTAGAATCAGGTCCTGTAGATCAACAAAATATTGAAAAAAGAAAGGATATCCTTGTATTTACA ACACATCCTCTGAAGGAAGATCTAGAAATAACGGGAAAGTTATCGGCAAAATTGTTTGTTACCTCAGATCAACAAGACTC AGACATTGTTGTTCATCTTACAGACGTTTATCCGGATGGTAAAAGTGTTTTGATTTCAGAAGGGGGTATACGTTTAGGAG TATTTTGTTATCAAAATGATTCAAAAATTGACTTAAAGCCAGACCAACCAGTTGAAGTAGATCTCGACTTATGGTCCACA AGTTTAGTTTTTGCGAAAGGACATTCAATTCGAATTTCTATTAGTAGTTCTAACTATCCGCGCTACGAAAAAAATCTTAA TGTGGGATTAATTGGCAGCCAGAGAGGAGAATTTAAATCTGCACACAATACCATTTATATGGGAGAAAAATACCCTTCAC AACTTATTTTGCCTGTTGTTCGTAAGGGAGAAACTTGGTTGACAAGAGAGCAACCATCTGTCAAGCCTATGGAAAATTCC TTATGA
Upstream 100 bases:
>100_bases TATAAAATCTCTTGTATAACTTAATTTGGATAAAGTTGATGTTAAACAAGAGATTTTGTGTATTTATAGATTTTAAATTT ATCTACAAAACAAGCTTGTG
Downstream 100 bases:
>100_bases AAGTCGTAATTTTAGCAGCAGGAAAAGGAAGTCGATTAGATCATTCGGAAGGACATGATCCTAAAGCTTTAACTCGTTTA ATCAATCGTCAAACAATTTT
Product: putative acylase and diesterase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 561; Mature: 561
Protein sequence:
>561_residues MMIRLYTCIFVFLLNILGSEELKPDLTIMVPMRDGVSLPTDLYLPTPEARNLPCILIRSPAGRDSTWKSFASMAKAGYVI AIQDTRSVLDLEGKTFPFLSDGWGKLQDGYDAVEWLAKSPYTNGKIGTWGSSAVGITQLLLAPTQPPHLVCQYIIVAAAS LYHHGLFPGGLLLKHQAESWLGYYARDTGVLNYVSQRPFYNEFWKQLNTSEMAHRVKIPGMLVAGWYDTFLQGTLDAFEA RQREGEEGAKGKQKLIIGPWTHFWPLSNHFGDFKIPVAGENPPMDISPKRWFDHYLKGEVNEVESLPPVLYYVMGPFDGS TSSGNIWRTSEVWPVPTVATAFYLTSQHTLQQTPPSLGLLAYTYDPTNPIPTRGGRNLFLESGPVDQQNIEKRKDILVFT THPLKEDLEITGKLSAKLFVTSDQQDSDIVVHLTDVYPDGKSVLISEGGIRLGVFCYQNDSKIDLKPDQPVEVDLDLWST SLVFAKGHSIRISISSSNYPRYEKNLNVGLIGSQRGEFKSAHNTIYMGEKYPSQLILPVVRKGETWLTREQPSVKPMENS L
Sequences:
>Translated_561_residues MMIRLYTCIFVFLLNILGSEELKPDLTIMVPMRDGVSLPTDLYLPTPEARNLPCILIRSPAGRDSTWKSFASMAKAGYVI AIQDTRSVLDLEGKTFPFLSDGWGKLQDGYDAVEWLAKSPYTNGKIGTWGSSAVGITQLLLAPTQPPHLVCQYIIVAAAS LYHHGLFPGGLLLKHQAESWLGYYARDTGVLNYVSQRPFYNEFWKQLNTSEMAHRVKIPGMLVAGWYDTFLQGTLDAFEA RQREGEEGAKGKQKLIIGPWTHFWPLSNHFGDFKIPVAGENPPMDISPKRWFDHYLKGEVNEVESLPPVLYYVMGPFDGS TSSGNIWRTSEVWPVPTVATAFYLTSQHTLQQTPPSLGLLAYTYDPTNPIPTRGGRNLFLESGPVDQQNIEKRKDILVFT THPLKEDLEITGKLSAKLFVTSDQQDSDIVVHLTDVYPDGKSVLISEGGIRLGVFCYQNDSKIDLKPDQPVEVDLDLWST SLVFAKGHSIRISISSSNYPRYEKNLNVGLIGSQRGEFKSAHNTIYMGEKYPSQLILPVVRKGETWLTREQPSVKPMENS L >Mature_561_residues MMIRLYTCIFVFLLNILGSEELKPDLTIMVPMRDGVSLPTDLYLPTPEARNLPCILIRSPAGRDSTWKSFASMAKAGYVI AIQDTRSVLDLEGKTFPFLSDGWGKLQDGYDAVEWLAKSPYTNGKIGTWGSSAVGITQLLLAPTQPPHLVCQYIIVAAAS LYHHGLFPGGLLLKHQAESWLGYYARDTGVLNYVSQRPFYNEFWKQLNTSEMAHRVKIPGMLVAGWYDTFLQGTLDAFEA RQREGEEGAKGKQKLIIGPWTHFWPLSNHFGDFKIPVAGENPPMDISPKRWFDHYLKGEVNEVESLPPVLYYVMGPFDGS TSSGNIWRTSEVWPVPTVATAFYLTSQHTLQQTPPSLGLLAYTYDPTNPIPTRGGRNLFLESGPVDQQNIEKRKDILVFT THPLKEDLEITGKLSAKLFVTSDQQDSDIVVHLTDVYPDGKSVLISEGGIRLGVFCYQNDSKIDLKPDQPVEVDLDLWST SLVFAKGHSIRISISSSNYPRYEKNLNVGLIGSQRGEFKSAHNTIYMGEKYPSQLILPVVRKGETWLTREQPSVKPMENS L
Specific function: Hydrolyzes cocaine to benzoate and ecgonine methyl ester, endowing the bacteria with the ability to utilize cocaine as a sole source of carbon and energy for growth, as this bacterium lives in the rhizosphere of coca plants [H]
COG id: COG2936
COG function: function code R; Predicted acyl esterases
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the alpha/beta hydrolase family. Carboxylesterase subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005674 - InterPro: IPR008979 - InterPro: IPR013736 - InterPro: IPR000383 [H]
Pfam domain/function: PF02129 Peptidase_S15; PF08530 PepX_C [H]
EC number: NA
Molecular weight: Translated: 62855; Mature: 62855
Theoretical pI: Translated: 6.46; Mature: 6.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMIRLYTCIFVFLLNILGSEELKPDLTIMVPMRDGVSLPTDLYLPTPEARNLPCILIRSP CEEEHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCEEEEECC AGRDSTWKSFASMAKAGYVIAIQDTRSVLDLEGKTFPFLSDGWGKLQDGYDAVEWLAKSP CCCCHHHHHHHHHHHCCEEEEECCCCCEEECCCCCCCCCCCCCHHHCCCHHHHHHHHHCC YTNGKIGTWGSSAVGITQLLLAPTQPPHLVCQYIIVAAASLYHHGLFPGGLLLKHQAESW CCCCCCCCCCCCHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHH LGYYARDTGVLNYVSQRPFYNEFWKQLNTSEMAHRVKIPGMLVAGWYDTFLQGTLDAFEA HHHHHHCCCHHHHHHCCCCHHHHHHHCCHHHHHHEECCCCEEEEHHHHHHHHHHHHHHHH RQREGEEGAKGKQKLIIGPWTHFWPLSNHFGDFKIPVAGENPPMDISPKRWFDHYLKGEV HHHCCCCCCCCCCEEEECCCHHCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCH NEVESLPPVLYYVMGPFDGSTSSGNIWRTSEVWPVPTVATAFYLTSQHTLQQTPPSLGLL HHHHCCCCEEEEEECCCCCCCCCCCEEECCCCCCCCHHHHEEEEECCHHHHCCCCCCEEE AYTYDPTNPIPTRGGRNLFLESGPVDQQNIEKRKDILVFTTHPLKEDLEITGKLSAKLFV EEEECCCCCCCCCCCCEEEEECCCCCHHHHHHHCCEEEEECCCCCCCCEEEEEEEEEEEE TSDQQDSDIVVHLTDVYPDGKSVLISEGGIRLGVFCYQNDSKIDLKPDQPVEVDLDLWST ECCCCCCCEEEEEEECCCCCCEEEEECCCEEEEEEEEECCCEEECCCCCCCEEEEEECCE SLVFAKGHSIRISISSSNYPRYEKNLNVGLIGSQRGEFKSAHNTIYMGEKYPSQLILPVV EEEEECCCEEEEEEECCCCCCHHCCCCEEEEECCCCCCCCCCCEEEECCCCCCHHHHHHH RKGETWLTREQPSVKPMENSL CCCCEEEECCCCCCCCCCCCC >Mature Secondary Structure MMIRLYTCIFVFLLNILGSEELKPDLTIMVPMRDGVSLPTDLYLPTPEARNLPCILIRSP CEEEHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCEEEEECC AGRDSTWKSFASMAKAGYVIAIQDTRSVLDLEGKTFPFLSDGWGKLQDGYDAVEWLAKSP CCCCHHHHHHHHHHHCCEEEEECCCCCEEECCCCCCCCCCCCCHHHCCCHHHHHHHHHCC YTNGKIGTWGSSAVGITQLLLAPTQPPHLVCQYIIVAAASLYHHGLFPGGLLLKHQAESW CCCCCCCCCCCCHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHH LGYYARDTGVLNYVSQRPFYNEFWKQLNTSEMAHRVKIPGMLVAGWYDTFLQGTLDAFEA HHHHHHCCCHHHHHHCCCCHHHHHHHCCHHHHHHEECCCCEEEEHHHHHHHHHHHHHHHH RQREGEEGAKGKQKLIIGPWTHFWPLSNHFGDFKIPVAGENPPMDISPKRWFDHYLKGEV HHHCCCCCCCCCCEEEECCCHHCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCH NEVESLPPVLYYVMGPFDGSTSSGNIWRTSEVWPVPTVATAFYLTSQHTLQQTPPSLGLL HHHHCCCCEEEEEECCCCCCCCCCCEEECCCCCCCCHHHHEEEEECCHHHHCCCCCCEEE AYTYDPTNPIPTRGGRNLFLESGPVDQQNIEKRKDILVFTTHPLKEDLEITGKLSAKLFV EEEECCCCCCCCCCCCEEEEECCCCCHHHHHHHCCEEEEECCCCCCCCEEEEEEEEEEEE TSDQQDSDIVVHLTDVYPDGKSVLISEGGIRLGVFCYQNDSKIDLKPDQPVEVDLDLWST ECCCCCCCEEEEEEECCCCCCEEEEECCCEEEEEEEEECCCEEECCCCCCCEEEEEECCE SLVFAKGHSIRISISSSNYPRYEKNLNVGLIGSQRGEFKSAHNTIYMGEKYPSQLILPVV EEEEECCCEEEEEEECCCCCCHHCCCCEEEEECCCCCCCCCCCEEEECCCCCCHHHHHHH RKGETWLTREQPSVKPMENSL CCCCEEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10698749; 11742345; 12369817 [H]