| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46445701
Identifier: 46445701
GI number: 46445701
Start: 124467
End: 125639
Strand: Reverse
Name: 46445701
Synonym: pc0067
Alternate gene names: NA
Gene position: 125639-124467 (Counterclockwise)
Preceding gene: 46445702
Following gene: 46445700
Centisome position: 5.2
GC content: 32.99
Gene sequence:
>1173_bases GTGAACAAAAAATTTGCCATTTCCTATCTTATTATCTTTATCGCTTTAATTTTTTCTCTAAGCCTTTCAAGACCGATTTC TGACAAGCTTAGAGGAGAGTCCGTCGCTCTCCTGGCTCCTTTGTGGAACAAATTACTTTATATTAAACATTTTATTTTAC ACCCATTTGAAGCTCCGCCTTCCAAAACAACTTTTACTCTCCAAGAAGAAAATCAAAAACTTGAACTTACAAATCAATTG TTGAATAATGATTTAAAAACTCTTTACGAACTATTAGATCAACAGCAGTCTTTACAATTTCAATTAAATAAATTAGCTAC TGAATATCCTCAAGAGCTTCGAGCTTTACAAAAACAACAAGAACATACTAAACAACAATTTTTTACCAATCTTCAGTTAC AAATCCAAACCAAGCCTGCTCGTGTTATATTTCGTTCTTTAGATACTTGGAACCAATCTTTGTGGATTAATGTTGGAGAA TCTGATAATCCCCCAAATGATAAAATTATAGCTAAAAACAGCCCTGTGTTAGTAGGACAAACAATTGTTGGTGTCATCGA TTATGTAGGAACTCACCAATCTCGCGTTCGATTAATTACAGACACAGGTCTAACCCCTTCTGTAAGAGCAGTTCGCGGTG GTGAACAAGAGCTATTCCTTGCTGAACAAATTGAATCTATTTTTATTCAATTACAACGAAAAAACACTAAAATTATTTCA AAAGAAGACTCGGATCAGATTGCTAAGTTTTTATCTCATTTAAAAACAGTTTTAAAAACTCATAAAAAGACTTGGTATCT TGCTAAAGGTCATTTACAAGGAATTAAACGACCAAATATACGAGGACAATCGTTTATTTTAAAAGGAACAGGATTTAACT ATGATTTTGCTGACGAGGAGGGTAATGGAAGAGATTTAAGAACAGGTAAACCTTTGAATCAAGAAGGTACTGCTGTTCCC CTTTTAAAAATGTATGATCTTTTAGTCACAACAGGAATGGATGGAGTTTTTCCAGCAGGTTTGAAAGTAGCCACAATTAG TAAAATTCATTTACTTAAAGAGGGAGATTATTTTTATGAGATTGAAGCTATTCCTTTAAGTGTGGATTTAGAAAGTTTAT CTTTAGTATTCGTCATCCCTCCCGTTGGATATATAAAAAACTTAGTTAATTAG
Upstream 100 bases:
>100_bases CTTGGTGAGATAAAGACATTAAGTTGAAACAAAGGTAATCATCTTTTTTAAAGTTATAAAACGTTTATATATATATTTTT TTTTTGAGCTTTGATATTAA
Downstream 100 bases:
>100_bases GAACACTTGTTTTATGCAACCTTCTATAGGTATTGTTATTCCCACTTTTCAGGCCGCCAAACACCTTCCTCTCTGTTTAG GACCTCTCATCCAATCTCGC
Product: rod shape-determining protein MreC
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 390; Mature: 390
Protein sequence:
>390_residues MNKKFAISYLIIFIALIFSLSLSRPISDKLRGESVALLAPLWNKLLYIKHFILHPFEAPPSKTTFTLQEENQKLELTNQL LNNDLKTLYELLDQQQSLQFQLNKLATEYPQELRALQKQQEHTKQQFFTNLQLQIQTKPARVIFRSLDTWNQSLWINVGE SDNPPNDKIIAKNSPVLVGQTIVGVIDYVGTHQSRVRLITDTGLTPSVRAVRGGEQELFLAEQIESIFIQLQRKNTKIIS KEDSDQIAKFLSHLKTVLKTHKKTWYLAKGHLQGIKRPNIRGQSFILKGTGFNYDFADEEGNGRDLRTGKPLNQEGTAVP LLKMYDLLVTTGMDGVFPAGLKVATISKIHLLKEGDYFYEIEAIPLSVDLESLSLVFVIPPVGYIKNLVN
Sequences:
>Translated_390_residues MNKKFAISYLIIFIALIFSLSLSRPISDKLRGESVALLAPLWNKLLYIKHFILHPFEAPPSKTTFTLQEENQKLELTNQL LNNDLKTLYELLDQQQSLQFQLNKLATEYPQELRALQKQQEHTKQQFFTNLQLQIQTKPARVIFRSLDTWNQSLWINVGE SDNPPNDKIIAKNSPVLVGQTIVGVIDYVGTHQSRVRLITDTGLTPSVRAVRGGEQELFLAEQIESIFIQLQRKNTKIIS KEDSDQIAKFLSHLKTVLKTHKKTWYLAKGHLQGIKRPNIRGQSFILKGTGFNYDFADEEGNGRDLRTGKPLNQEGTAVP LLKMYDLLVTTGMDGVFPAGLKVATISKIHLLKEGDYFYEIEAIPLSVDLESLSLVFVIPPVGYIKNLVN >Mature_390_residues MNKKFAISYLIIFIALIFSLSLSRPISDKLRGESVALLAPLWNKLLYIKHFILHPFEAPPSKTTFTLQEENQKLELTNQL LNNDLKTLYELLDQQQSLQFQLNKLATEYPQELRALQKQQEHTKQQFFTNLQLQIQTKPARVIFRSLDTWNQSLWINVGE SDNPPNDKIIAKNSPVLVGQTIVGVIDYVGTHQSRVRLITDTGLTPSVRAVRGGEQELFLAEQIESIFIQLQRKNTKIIS KEDSDQIAKFLSHLKTVLKTHKKTWYLAKGHLQGIKRPNIRGQSFILKGTGFNYDFADEEGNGRDLRTGKPLNQEGTAVP LLKMYDLLVTTGMDGVFPAGLKVATISKIHLLKEGDYFYEIEAIPLSVDLESLSLVFVIPPVGYIKNLVN
Specific function: Unknown
COG id: COG1792
COG function: function code M; Cell shape-determining protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44299; Mature: 44299
Theoretical pI: Translated: 9.66; Mature: 9.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKKFAISYLIIFIALIFSLSLSRPISDKLRGESVALLAPLWNKLLYIKHFILHPFEAPP CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEEHHHHHHHHHHHHHHHHCCCCCCC SKTTFTLQEENQKLELTNQLLNNDLKTLYELLDQQQSLQFQLNKLATEYPQELRALQKQQ CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH EHTKQQFFTNLQLQIQTKPARVIFRSLDTWNQSLWINVGESDNPPNDKIIAKNSPVLVGQ HHHHHHHHCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEECCCCEEEHH TIVGVIDYVGTHQSRVRLITDTGLTPSVRAVRGGEQELFLAEQIESIFIQLQRKNTKIIS HHHHHHHHHCCCCCEEEEEEECCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEC KEDSDQIAKFLSHLKTVLKTHKKTWYLAKGHLQGIKRPNIRGQSFILKGTGFNYDFADEE CCCHHHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCCCEEEEECCCCCCCCCCCC GNGRDLRTGKPLNQEGTAVPLLKMYDLLVTTGMDGVFPAGLKVATISKIHLLKEGDYFYE CCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECCCEEEE IEAIPLSVDLESLSLVFVIPPVGYIKNLVN EEEEEEEEEHHHEEEEEEECCHHHHHHHCC >Mature Secondary Structure MNKKFAISYLIIFIALIFSLSLSRPISDKLRGESVALLAPLWNKLLYIKHFILHPFEAPP CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEEHHHHHHHHHHHHHHHHCCCCCCC SKTTFTLQEENQKLELTNQLLNNDLKTLYELLDQQQSLQFQLNKLATEYPQELRALQKQQ CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH EHTKQQFFTNLQLQIQTKPARVIFRSLDTWNQSLWINVGESDNPPNDKIIAKNSPVLVGQ HHHHHHHHCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEECCCCEEEHH TIVGVIDYVGTHQSRVRLITDTGLTPSVRAVRGGEQELFLAEQIESIFIQLQRKNTKIIS HHHHHHHHHCCCCCEEEEEEECCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEC KEDSDQIAKFLSHLKTVLKTHKKTWYLAKGHLQGIKRPNIRGQSFILKGTGFNYDFADEE CCCHHHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCCCEEEEECCCCCCCCCCCC GNGRDLRTGKPLNQEGTAVPLLKMYDLLVTTGMDGVFPAGLKVATISKIHLLKEGDYFYE CCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECCCEEEE IEAIPLSVDLESLSLVFVIPPVGYIKNLVN EEEEEEEEEHHHEEEEEEECCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA