| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46445652
Identifier: 46445652
GI number: 46445652
Start: 29961
End: 31583
Strand: Direct
Name: 46445652
Synonym: pc0018
Alternate gene names: NA
Gene position: 29961-31583 (Clockwise)
Preceding gene: 46445649
Following gene: 46445653
Centisome position: 1.24
GC content: 31.73
Gene sequence:
>1623_bases TTGCATTTGAAAAGATTATTAGTTACGCTTAAACAACAAAGTGAAAAAGAGATAAAAAAACTTCAAAACCAATTGTTTAG CCAGGAAAAAATAAGTCAATCATTAAAAGAACAATTACTTCAATCTAGTGCAAAATTTAAAAAATTGCAAAGTAATCATG ATGAAGAATTAGATGCTTTAAGAGACCAATTTATTTCTCTTAGAAATCTTCTTCAACAAACTCAAGAAGAATTAAGATTT CAAAACGATCAGGCTGTTCATGCGTCGAATAAAATGCAAATTATTCATTCGAATCAAAGAGAGGAGGAAGCTAGTGGTAA AGAAACAGAGCGCCTGCGCGAAGAATTAAGCGAGTCGAATTTAAGAACTCAAGAAATGCAAGCCCTAGCTTCAAAAAATT ATCAAAAATATGAGCAAGAAATTCAACATCTTAAGCACTTATTATCGCAACGAGAAATTGCCGAACATCAAACAGAAGTG ATTGCTTCTCATACTGTTTCCTACCAACTTCGCTTAGAACTAGAAGAAATTAAACAAACTCTCAAGCAAGGTAATTATGA TACAAAGGCTTTAGAGACGCATTATGTCGAAGTTTTAAATGAAAAAGTCAAACTTGAACATCAAATTAAACAATTGCAAA TAGAATTGGAGCATCAATCTTCTAATTTAGCGGCTTTTCAAATCCAAATTCCAGACTTGAATCAAAGTAAAAAAGAGCTT GAGGAGTGTCTAAAGGAAAAAGAAAATTTATTAAATCACACACTTGAAAAACAGGAACAATTAAAAGAACGTTTATTTCA AATGGAACTTTCTTCTCAAGAAAAAATGCAGATTCAAGAAAAATATGAGCTGTTGAAAGAAGAATGGAACCAACTGAATG AAAGTTTAGAAGAGGCGTTAGATATTCGTGTAAAATCTGAACAAGAAGTCATACGTTTTAGTGAGCTTTTGAAAGAAAAA AATCAAATATTGTCGGAAAAAGAAGGGCAAATTTTTCAGTTATTGCGTGATAAAGAAAACCAAGAAACACATCTACATGA AATGAATCATTTAGTGAATGAAAGCGAAACTCGCTTTAAAATTGCTCAGCAACATTTAGCAAAAAAATTGAAAGAAGCGG CTATTTTATCTGAAAAAGTTGAAGGTCAACAAAGAGTGTTAGAAGAAATTTCTCAAAATAACGAAAACTTCAAAATTCAA ATTAATCAGCTTCAGGCTAGTTTAGGAATTTCTCAAAAACAAGAGAAAAAACTTCAAGAACAATTACATGATGCTTTAAA AAGCACTGAAAGCCAAGTTTCTAAATGGGAAGAAAAATACTTTTGCATGTATGACAAATGGCAAGAAAGTGAAAATTGCG TTAAGAAATTGAAGAAAATTGAAGAGAAACACCAACAAATGCAAAACCTTATCGCCAATTTAGGGAATTTCATGGGTGGA CCTTCCTCTCAGAATTTTTTACACACCATGCAAGAATTAGTAGATAAGTCAAATCAACAAAATAATAGTGAAGAAGAACA GCCCGAGTCCGTTCAACATCCAAGCCAAGAAGACGAAGAAAAATATGATTTGTTTGGTATGAAATTTAGGCAAGATAAAC CAAAACCAAATTCCCTTTCATGA
Upstream 100 bases:
>100_bases TAGAGATATCTCTTTGGCAAAACTTATGCAAACAAAAGATCATGATTCTTCTGACTCTTCCTCTAATGAAGTTAACTCTT TAAACGAGGCTGCACAAATT
Downstream 100 bases:
>100_bases GCAATCAAGTTATTATTTTAGGATTAGACCCTGGGACAAAAATAACTGGTTTTGGAGTCATTCGCATTGAAGGCCATCAG TATGTTCCTGTCGATTACGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 540; Mature: 540
Protein sequence:
>540_residues MHLKRLLVTLKQQSEKEIKKLQNQLFSQEKISQSLKEQLLQSSAKFKKLQSNHDEELDALRDQFISLRNLLQQTQEELRF QNDQAVHASNKMQIIHSNQREEEASGKETERLREELSESNLRTQEMQALASKNYQKYEQEIQHLKHLLSQREIAEHQTEV IASHTVSYQLRLELEEIKQTLKQGNYDTKALETHYVEVLNEKVKLEHQIKQLQIELEHQSSNLAAFQIQIPDLNQSKKEL EECLKEKENLLNHTLEKQEQLKERLFQMELSSQEKMQIQEKYELLKEEWNQLNESLEEALDIRVKSEQEVIRFSELLKEK NQILSEKEGQIFQLLRDKENQETHLHEMNHLVNESETRFKIAQQHLAKKLKEAAILSEKVEGQQRVLEEISQNNENFKIQ INQLQASLGISQKQEKKLQEQLHDALKSTESQVSKWEEKYFCMYDKWQESENCVKKLKKIEEKHQQMQNLIANLGNFMGG PSSQNFLHTMQELVDKSNQQNNSEEEQPESVQHPSQEDEEKYDLFGMKFRQDKPKPNSLS
Sequences:
>Translated_540_residues MHLKRLLVTLKQQSEKEIKKLQNQLFSQEKISQSLKEQLLQSSAKFKKLQSNHDEELDALRDQFISLRNLLQQTQEELRF QNDQAVHASNKMQIIHSNQREEEASGKETERLREELSESNLRTQEMQALASKNYQKYEQEIQHLKHLLSQREIAEHQTEV IASHTVSYQLRLELEEIKQTLKQGNYDTKALETHYVEVLNEKVKLEHQIKQLQIELEHQSSNLAAFQIQIPDLNQSKKEL EECLKEKENLLNHTLEKQEQLKERLFQMELSSQEKMQIQEKYELLKEEWNQLNESLEEALDIRVKSEQEVIRFSELLKEK NQILSEKEGQIFQLLRDKENQETHLHEMNHLVNESETRFKIAQQHLAKKLKEAAILSEKVEGQQRVLEEISQNNENFKIQ INQLQASLGISQKQEKKLQEQLHDALKSTESQVSKWEEKYFCMYDKWQESENCVKKLKKIEEKHQQMQNLIANLGNFMGG PSSQNFLHTMQELVDKSNQQNNSEEEQPESVQHPSQEDEEKYDLFGMKFRQDKPKPNSLS >Mature_540_residues MHLKRLLVTLKQQSEKEIKKLQNQLFSQEKISQSLKEQLLQSSAKFKKLQSNHDEELDALRDQFISLRNLLQQTQEELRF QNDQAVHASNKMQIIHSNQREEEASGKETERLREELSESNLRTQEMQALASKNYQKYEQEIQHLKHLLSQREIAEHQTEV IASHTVSYQLRLELEEIKQTLKQGNYDTKALETHYVEVLNEKVKLEHQIKQLQIELEHQSSNLAAFQIQIPDLNQSKKEL EECLKEKENLLNHTLEKQEQLKERLFQMELSSQEKMQIQEKYELLKEEWNQLNESLEEALDIRVKSEQEVIRFSELLKEK NQILSEKEGQIFQLLRDKENQETHLHEMNHLVNESETRFKIAQQHLAKKLKEAAILSEKVEGQQRVLEEISQNNENFKIQ INQLQASLGISQKQEKKLQEQLHDALKSTESQVSKWEEKYFCMYDKWQESENCVKKLKKIEEKHQQMQNLIANLGNFMGG PSSQNFLHTMQELVDKSNQQNNSEEEQPESVQHPSQEDEEKYDLFGMKFRQDKPKPNSLS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64027; Mature: 64027
Theoretical pI: Translated: 5.56; Mature: 5.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHLKRLLVTLKQQSEKEIKKLQNQLFSQEKISQSLKEQLLQSSAKFKKLQSNHDEELDAL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH RDQFISLRNLLQQTQEELRFQNDQAVHASNKMQIIHSNQREEEASGKETERLREELSESN HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCHHHHCCHHHHHHHHHHHHCC LRTQEMQALASKNYQKYEQEIQHLKHLLSQREIAEHQTEVIASHTVSYQLRLELEEIKQT CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHH LKQGNYDTKALETHYVEVLNEKVKLEHQIKQLQIELEHQSSNLAAFQIQIPDLNQSKKEL HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHH EECLKEKENLLNHTLEKQEQLKERLFQMELSSQEKMQIQEKYELLKEEWNQLNESLEEAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH DIRVKSEQEVIRFSELLKEKNQILSEKEGQIFQLLRDKENQETHLHEMNHLVNESETRFK HHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHH IAQQHLAKKLKEAAILSEKVEGQQRVLEEISQNNENFKIQINQLQASLGISQKQEKKLQE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCHHHHHHHHH QLHDALKSTESQVSKWEEKYFCMYDKWQESENCVKKLKKIEEKHQQMQNLIANLGNFMGG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PSSQNFLHTMQELVDKSNQQNNSEEEQPESVQHPSQEDEEKYDLFGMKFRQDKPKPNSLS CCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHCCHHHCCCCCCCCCC >Mature Secondary Structure MHLKRLLVTLKQQSEKEIKKLQNQLFSQEKISQSLKEQLLQSSAKFKKLQSNHDEELDAL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH RDQFISLRNLLQQTQEELRFQNDQAVHASNKMQIIHSNQREEEASGKETERLREELSESN HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCHHHHCCHHHHHHHHHHHHCC LRTQEMQALASKNYQKYEQEIQHLKHLLSQREIAEHQTEVIASHTVSYQLRLELEEIKQT CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHH LKQGNYDTKALETHYVEVLNEKVKLEHQIKQLQIELEHQSSNLAAFQIQIPDLNQSKKEL HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHH EECLKEKENLLNHTLEKQEQLKERLFQMELSSQEKMQIQEKYELLKEEWNQLNESLEEAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH DIRVKSEQEVIRFSELLKEKNQILSEKEGQIFQLLRDKENQETHLHEMNHLVNESETRFK HHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHH IAQQHLAKKLKEAAILSEKVEGQQRVLEEISQNNENFKIQINQLQASLGISQKQEKKLQE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCHHHHHHHHH QLHDALKSTESQVSKWEEKYFCMYDKWQESENCVKKLKKIEEKHQQMQNLIANLGNFMGG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PSSQNFLHTMQELVDKSNQQNNSEEEQPESVQHPSQEDEEKYDLFGMKFRQDKPKPNSLS CCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHCCHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA