Definition Candidatus Protochlamydia amoebophila UWE25, complete genome.
Accession NC_005861
Length 2,414,465

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The map label for this gene is 46445652

Identifier: 46445652

GI number: 46445652

Start: 29961

End: 31583

Strand: Direct

Name: 46445652

Synonym: pc0018

Alternate gene names: NA

Gene position: 29961-31583 (Clockwise)

Preceding gene: 46445649

Following gene: 46445653

Centisome position: 1.24

GC content: 31.73

Gene sequence:

>1623_bases
TTGCATTTGAAAAGATTATTAGTTACGCTTAAACAACAAAGTGAAAAAGAGATAAAAAAACTTCAAAACCAATTGTTTAG
CCAGGAAAAAATAAGTCAATCATTAAAAGAACAATTACTTCAATCTAGTGCAAAATTTAAAAAATTGCAAAGTAATCATG
ATGAAGAATTAGATGCTTTAAGAGACCAATTTATTTCTCTTAGAAATCTTCTTCAACAAACTCAAGAAGAATTAAGATTT
CAAAACGATCAGGCTGTTCATGCGTCGAATAAAATGCAAATTATTCATTCGAATCAAAGAGAGGAGGAAGCTAGTGGTAA
AGAAACAGAGCGCCTGCGCGAAGAATTAAGCGAGTCGAATTTAAGAACTCAAGAAATGCAAGCCCTAGCTTCAAAAAATT
ATCAAAAATATGAGCAAGAAATTCAACATCTTAAGCACTTATTATCGCAACGAGAAATTGCCGAACATCAAACAGAAGTG
ATTGCTTCTCATACTGTTTCCTACCAACTTCGCTTAGAACTAGAAGAAATTAAACAAACTCTCAAGCAAGGTAATTATGA
TACAAAGGCTTTAGAGACGCATTATGTCGAAGTTTTAAATGAAAAAGTCAAACTTGAACATCAAATTAAACAATTGCAAA
TAGAATTGGAGCATCAATCTTCTAATTTAGCGGCTTTTCAAATCCAAATTCCAGACTTGAATCAAAGTAAAAAAGAGCTT
GAGGAGTGTCTAAAGGAAAAAGAAAATTTATTAAATCACACACTTGAAAAACAGGAACAATTAAAAGAACGTTTATTTCA
AATGGAACTTTCTTCTCAAGAAAAAATGCAGATTCAAGAAAAATATGAGCTGTTGAAAGAAGAATGGAACCAACTGAATG
AAAGTTTAGAAGAGGCGTTAGATATTCGTGTAAAATCTGAACAAGAAGTCATACGTTTTAGTGAGCTTTTGAAAGAAAAA
AATCAAATATTGTCGGAAAAAGAAGGGCAAATTTTTCAGTTATTGCGTGATAAAGAAAACCAAGAAACACATCTACATGA
AATGAATCATTTAGTGAATGAAAGCGAAACTCGCTTTAAAATTGCTCAGCAACATTTAGCAAAAAAATTGAAAGAAGCGG
CTATTTTATCTGAAAAAGTTGAAGGTCAACAAAGAGTGTTAGAAGAAATTTCTCAAAATAACGAAAACTTCAAAATTCAA
ATTAATCAGCTTCAGGCTAGTTTAGGAATTTCTCAAAAACAAGAGAAAAAACTTCAAGAACAATTACATGATGCTTTAAA
AAGCACTGAAAGCCAAGTTTCTAAATGGGAAGAAAAATACTTTTGCATGTATGACAAATGGCAAGAAAGTGAAAATTGCG
TTAAGAAATTGAAGAAAATTGAAGAGAAACACCAACAAATGCAAAACCTTATCGCCAATTTAGGGAATTTCATGGGTGGA
CCTTCCTCTCAGAATTTTTTACACACCATGCAAGAATTAGTAGATAAGTCAAATCAACAAAATAATAGTGAAGAAGAACA
GCCCGAGTCCGTTCAACATCCAAGCCAAGAAGACGAAGAAAAATATGATTTGTTTGGTATGAAATTTAGGCAAGATAAAC
CAAAACCAAATTCCCTTTCATGA

Upstream 100 bases:

>100_bases
TAGAGATATCTCTTTGGCAAAACTTATGCAAACAAAAGATCATGATTCTTCTGACTCTTCCTCTAATGAAGTTAACTCTT
TAAACGAGGCTGCACAAATT

Downstream 100 bases:

>100_bases
GCAATCAAGTTATTATTTTAGGATTAGACCCTGGGACAAAAATAACTGGTTTTGGAGTCATTCGCATTGAAGGCCATCAG
TATGTTCCTGTCGATTACGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 540; Mature: 540

Protein sequence:

>540_residues
MHLKRLLVTLKQQSEKEIKKLQNQLFSQEKISQSLKEQLLQSSAKFKKLQSNHDEELDALRDQFISLRNLLQQTQEELRF
QNDQAVHASNKMQIIHSNQREEEASGKETERLREELSESNLRTQEMQALASKNYQKYEQEIQHLKHLLSQREIAEHQTEV
IASHTVSYQLRLELEEIKQTLKQGNYDTKALETHYVEVLNEKVKLEHQIKQLQIELEHQSSNLAAFQIQIPDLNQSKKEL
EECLKEKENLLNHTLEKQEQLKERLFQMELSSQEKMQIQEKYELLKEEWNQLNESLEEALDIRVKSEQEVIRFSELLKEK
NQILSEKEGQIFQLLRDKENQETHLHEMNHLVNESETRFKIAQQHLAKKLKEAAILSEKVEGQQRVLEEISQNNENFKIQ
INQLQASLGISQKQEKKLQEQLHDALKSTESQVSKWEEKYFCMYDKWQESENCVKKLKKIEEKHQQMQNLIANLGNFMGG
PSSQNFLHTMQELVDKSNQQNNSEEEQPESVQHPSQEDEEKYDLFGMKFRQDKPKPNSLS

Sequences:

>Translated_540_residues
MHLKRLLVTLKQQSEKEIKKLQNQLFSQEKISQSLKEQLLQSSAKFKKLQSNHDEELDALRDQFISLRNLLQQTQEELRF
QNDQAVHASNKMQIIHSNQREEEASGKETERLREELSESNLRTQEMQALASKNYQKYEQEIQHLKHLLSQREIAEHQTEV
IASHTVSYQLRLELEEIKQTLKQGNYDTKALETHYVEVLNEKVKLEHQIKQLQIELEHQSSNLAAFQIQIPDLNQSKKEL
EECLKEKENLLNHTLEKQEQLKERLFQMELSSQEKMQIQEKYELLKEEWNQLNESLEEALDIRVKSEQEVIRFSELLKEK
NQILSEKEGQIFQLLRDKENQETHLHEMNHLVNESETRFKIAQQHLAKKLKEAAILSEKVEGQQRVLEEISQNNENFKIQ
INQLQASLGISQKQEKKLQEQLHDALKSTESQVSKWEEKYFCMYDKWQESENCVKKLKKIEEKHQQMQNLIANLGNFMGG
PSSQNFLHTMQELVDKSNQQNNSEEEQPESVQHPSQEDEEKYDLFGMKFRQDKPKPNSLS
>Mature_540_residues
MHLKRLLVTLKQQSEKEIKKLQNQLFSQEKISQSLKEQLLQSSAKFKKLQSNHDEELDALRDQFISLRNLLQQTQEELRF
QNDQAVHASNKMQIIHSNQREEEASGKETERLREELSESNLRTQEMQALASKNYQKYEQEIQHLKHLLSQREIAEHQTEV
IASHTVSYQLRLELEEIKQTLKQGNYDTKALETHYVEVLNEKVKLEHQIKQLQIELEHQSSNLAAFQIQIPDLNQSKKEL
EECLKEKENLLNHTLEKQEQLKERLFQMELSSQEKMQIQEKYELLKEEWNQLNESLEEALDIRVKSEQEVIRFSELLKEK
NQILSEKEGQIFQLLRDKENQETHLHEMNHLVNESETRFKIAQQHLAKKLKEAAILSEKVEGQQRVLEEISQNNENFKIQ
INQLQASLGISQKQEKKLQEQLHDALKSTESQVSKWEEKYFCMYDKWQESENCVKKLKKIEEKHQQMQNLIANLGNFMGG
PSSQNFLHTMQELVDKSNQQNNSEEEQPESVQHPSQEDEEKYDLFGMKFRQDKPKPNSLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 64027; Mature: 64027

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHLKRLLVTLKQQSEKEIKKLQNQLFSQEKISQSLKEQLLQSSAKFKKLQSNHDEELDAL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
RDQFISLRNLLQQTQEELRFQNDQAVHASNKMQIIHSNQREEEASGKETERLREELSESN
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCHHHHCCHHHHHHHHHHHHCC
LRTQEMQALASKNYQKYEQEIQHLKHLLSQREIAEHQTEVIASHTVSYQLRLELEEIKQT
CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHH
LKQGNYDTKALETHYVEVLNEKVKLEHQIKQLQIELEHQSSNLAAFQIQIPDLNQSKKEL
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHH
EECLKEKENLLNHTLEKQEQLKERLFQMELSSQEKMQIQEKYELLKEEWNQLNESLEEAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DIRVKSEQEVIRFSELLKEKNQILSEKEGQIFQLLRDKENQETHLHEMNHLVNESETRFK
HHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHH
IAQQHLAKKLKEAAILSEKVEGQQRVLEEISQNNENFKIQINQLQASLGISQKQEKKLQE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCHHHHHHHHH
QLHDALKSTESQVSKWEEKYFCMYDKWQESENCVKKLKKIEEKHQQMQNLIANLGNFMGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PSSQNFLHTMQELVDKSNQQNNSEEEQPESVQHPSQEDEEKYDLFGMKFRQDKPKPNSLS
CCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHCCHHHCCCCCCCCCC
>Mature Secondary Structure
MHLKRLLVTLKQQSEKEIKKLQNQLFSQEKISQSLKEQLLQSSAKFKKLQSNHDEELDAL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
RDQFISLRNLLQQTQEELRFQNDQAVHASNKMQIIHSNQREEEASGKETERLREELSESN
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCHHHHCCHHHHHHHHHHHHCC
LRTQEMQALASKNYQKYEQEIQHLKHLLSQREIAEHQTEVIASHTVSYQLRLELEEIKQT
CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHH
LKQGNYDTKALETHYVEVLNEKVKLEHQIKQLQIELEHQSSNLAAFQIQIPDLNQSKKEL
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHH
EECLKEKENLLNHTLEKQEQLKERLFQMELSSQEKMQIQEKYELLKEEWNQLNESLEEAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DIRVKSEQEVIRFSELLKEKNQILSEKEGQIFQLLRDKENQETHLHEMNHLVNESETRFK
HHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHH
IAQQHLAKKLKEAAILSEKVEGQQRVLEEISQNNENFKIQINQLQASLGISQKQEKKLQE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCHHHHHHHHH
QLHDALKSTESQVSKWEEKYFCMYDKWQESENCVKKLKKIEEKHQQMQNLIANLGNFMGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PSSQNFLHTMQELVDKSNQQNNSEEEQPESVQHPSQEDEEKYDLFGMKFRQDKPKPNSLS
CCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHCCHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA