Click here to switch to the map view.

The map label for this gene is 45659298

Identifier: 45659298

GI number: 45659298

Start: 4259075

End: 4259422

Strand: Direct

Name: 45659298

Synonym: LIC13483

Alternate gene names: NA

Gene position: 4259075-4259422 (Clockwise)

Preceding gene: 45659297

Following gene: 45659299

Centisome position: 99.58

GC content: 42.24

Gene sequence:

>348_bases
ATGGCAACCACAGAAGAACATCTAATCGTAAACAGTATCATAGGTGAGGGTGCAGAATTCAGCGGAGAATTTAAACTCAC
CGGGCTTTTAAGAATCGACGGAATTTTTCGAGGCTCTATAAAAACAGAAGGAAAAGTCCTAATCGGCAAATCTGGAATCG
TCGATACAGATATCAGAGCCCGAATTGTAGTCGCTGGCGGTGAAATCAATGGGAATATTTACGCGAGCGAACGAGTGACT
TTACTTGCTTCCTGCAGAATGAAAGGAGACATTGTATCTCCTAGAATCGTAATGGAAGAAGGAGTACAATTCGAAGGCAA
TTGTAAGATCAACCCAGTTGCACATTGA

Upstream 100 bases:

>100_bases
GTAAAACCGAAGCGTCTCCGAATTATATGCTTCATTATGAAATTCATGTTGGAACAAGAGCGATCAATCCGTTTGCTTTC
CTCAATCAGATTCAGGACTA

Downstream 100 bases:

>100_bases
AAGTACTCACTTATCAACCCCCTCGAAAAGAAACAGAAACCAAAAGCGCTTCCAAAAATAAGAAAGTAGGAACTTCTTCC
TTAAATTCTCTTAGCCAACC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 115; Mature: 114

Protein sequence:

>115_residues
MATTEEHLIVNSIIGEGAEFSGEFKLTGLLRIDGIFRGSIKTEGKVLIGKSGIVDTDIRARIVVAGGEINGNIYASERVT
LLASCRMKGDIVSPRIVMEEGVQFEGNCKINPVAH

Sequences:

>Translated_115_residues
MATTEEHLIVNSIIGEGAEFSGEFKLTGLLRIDGIFRGSIKTEGKVLIGKSGIVDTDIRARIVVAGGEINGNIYASERVT
LLASCRMKGDIVSPRIVMEEGVQFEGNCKINPVAH
>Mature_114_residues
ATTEEHLIVNSIIGEGAEFSGEFKLTGLLRIDGIFRGSIKTEGKVLIGKSGIVDTDIRARIVVAGGEINGNIYASERVTL
LASCRMKGDIVSPRIVMEEGVQFEGNCKINPVAH

Specific function: Unknown

COG id: COG1664

COG function: function code M; Integral membrane protein CcmA involved in cell shape determination

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12330; Mature: 12199

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATTEEHLIVNSIIGEGAEFSGEFKLTGLLRIDGIFRGSIKTEGKVLIGKSGIVDTDIRA
CCCCCHHEEEEHHHCCCCCCCCCEEEEEEEEEEEEEECCCCCCCEEEEECCCCEECCCEE
RIVVAGGEINGNIYASERVTLLASCRMKGDIVSPRIVMEEGVQFEGNCKINPVAH
EEEEECCCCCCEEEECCCEEEEEECCCCCCCCCCEEEECCCCEECCCEEEECCCC
>Mature Secondary Structure 
ATTEEHLIVNSIIGEGAEFSGEFKLTGLLRIDGIFRGSIKTEGKVLIGKSGIVDTDIRA
CCCCHHEEEEHHHCCCCCCCCCEEEEEEEEEEEEEECCCCCCCEEEEECCCCEECCCEE
RIVVAGGEINGNIYASERVTLLASCRMKGDIVSPRIVMEEGVQFEGNCKINPVAH
EEEEECCCCCCEEEECCCEEEEEECCCCCCCCCCEEEECCCCEECCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA